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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000113_pilon:960270..964214- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_042934 ID=XLOC_042934|Name=XLOC_042934|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3945bp|location=Sequence derived from alignment at sc0000113_pilon:960270..964214- (Clytia hemisphaerica_ch_hm2_pilon)
ATGATACGACAAACCTATGATTCATCCAAGAACATCTACAACTATATCAT
TACCATTGACGGTTTAGTCAAAAAGATTGCCAGGAACACAAGACCTACAA
TCTTCAAGAATGTTAAAATGTGGGCAGCAGATCCATGGCATCATGCAGCA
GATGCCATTGTTAGAAATCTAGTTTTCAAGAATTTACCCTATGGTAAGAG
CTGAACATAATCTATGTAGACAGCACTTTGAACAGTGGTCGTGCTAATTT
TTTTTATCTGGGACTAAAAATGCACTTTTTAAAAGAAACTACAGAAGTAC
ACTTCAAATTGAAGGGGTTGAAGAAAAGGAAGGATTGTATGAATTATCAC
AAAATCTGCTTTGGCACCAAAAAATAGACTAAAGCAGGAATCCCACTGCT
TTATAATATTCAGTGGTCAAGCTAAGATTTTGTGTCAGAAGGAGCTTGAA
ATCTATACCAAACAATAAGCAAAAATTCTTCAAATTTTGCTGAATTCTGA
GACGGAAAAGGCTATTTCTATATACTCCCTGAGACTGAAATATCGCCTAA
GACTAAAGCACTATAAACAGGTCTAATAAGCGACAATTCTTCATTATTCC
TTTCACAGGTTATTCATATGAGAACTGTCAAAGGCCTACACCAAGACATA
GTTGTCACTATGCAAGTTCTATCAAATCTTACAGATCAGTTGATGGAGGT
TGCAATAATCTCAAACACCCAACACTTGGTGCAGCTCATACACCTTTGAG
GAGGATTCTAAGTAAGTCAATCGTATTCAAATCATAATAATATGAAAAAT
GACCAAAAATTCTGGCTGGAAAGCATTTTTATTTTTAATTTGAATAAAGA
ATTCAAATAGATAAAGTTGGAAACATTGAACAACACAAAGAATGAGAGAC
ATGAGAGATGAGATGTACCTGCAAGGGGAATAGGATAAGATTTTCCTAAG
ATACGATATGATATGAGCCCTCTCAAATGGGGAATGGGTCCTACTCCTTA
CGAAGTAGGAATTCCTCCTTTTTCAAGTTGGAACGCTTAGCGCTGTCCAG
GAAATCAAAACACAAAGAATAATCCAGAGAATTTTGCATCATAAACCTTG
ATCAGAAAAAAGCCGAAAATTTAAGATGTTAAAAATTCTTGGATCATCTC
ACGAACACATTGTTCATGAGGAATGAAAATGATTCTAATAATTCCATTTC
ATTGTGATTTCCATTGCAGAGGCAGAATATGCACGTGATGGTAATCACGA
TACACCAAGAGGATTCCCAAACACTGATCCAGTACTACCACCACCAAACC
TGGTCACACAACAATGTTTCCTTACAGAAACAACATCATCAAGAAGCTCA
ACACCAAGTCCGTCCACTCTTTTCATGACTTTTGGTCAATTCTTGGATCA
TGATTTCGCACTCTCACATCATGCTGATTGCAAACAAAGGTATGCATCCA
GAACAGATTTAGTCATTTTCCAACCAATGACCACACTTTCTAGAGGGGTT
AAGACCCCCCCATAGGTAAGAAGACCCCCTCCCTTAGGAAATATATTTGA
AAATTCAGACCCCCCATTATAGTGCTGCATATATGCCGAAACGTTTAAAA
ATAAAAATAAAAATAAAATTCAAAATTAACTAAAAGCAGCTTCTGATATT
AAACCTTTTGCTCAAGATGTATGAAATGATTGATTTATTAAGAAATATGA
AATTAAACTTTTGTACATAATTTTGTGAAGACCCCCACTTAGGTAGGAAG
AACCCCCTTAACTGGCAACCCCCCTAGGAAATTCAAACTTTCAACACCCC
TCCCCCTTGTCTGAGTTTCATCAACATCTAAGACCCCCCTGAATGTAGGG
GGGTAGAAACTACGTCAATGAGATTCAATGATCACTTTTACTGAGCACTT
CTCTGTGAGGAAAAGAATGAATATTTTCATTATTCCTCTCAATTGTATGT
TCAAACAAAAGCATGTATAAATGAACTGATTAAAATTTTATTATTATTTT
AATTCATTCAATCAACATACTCTCATTCATTCTCTTTAGATGTAATGACT
TCAAAGCATGGCAATCTCCATGTTTCCCAATATTGTTCAACAACAGAGAT
TCCCAATGTTCAATGAATGGACGATCATTTGCTGTCTGCTCAAAGAGAGC
TTATTTAGATGACCGACAACAGTCGAATGATATATCTGCATTCATTGATG
CTTCAAATGTTTACAGTAATGATCCAGCAAGATTCCAAAAGATAAGAGAT
AATAAAAGTAAGACGTTGTACTCTTTGGACCTTAAAAACTACTCTGCCTA
ATTAAAAAGCTTACTATATTCTACAAAACCTTATTTTAAAATAAAACCGT
GAGAAATAGTGATGTTAAGAGCATATTTTACAATGCATTTGTCATATATG
TCTTTCTTAATACTTATGTCCAATTATATCCAGTTGAATATTGAGATTTG
ATATGGATGGCAAAGCAGTGCATGCATGTTACACTTGCAGAGACTTAACA
GCAATGTGTATAATACCTCTAGAGAAGTTGGTTTTCTGACAAACTAAATG
ATCAATTTTATTTCTATAGATGGAAAATTGAAGATGATGAGTAATGGATT
ATTACCAATTGATCGCAATTTTGGACAACATCGATGTAAAATCAAGGGAG
GTTGCTCCTTAGCTGGTGAACAAAGAGTGGATGAAAACATGGCTTTATCC
TCAATGCATACTCTCTGGGCAAGAGAACACAATCGTCTTGTAGCTGGCTT
GAAGAAAATAAATCCTGGTTGGAATAACGAAAGACTTTTCCAAGAAGCAA
GGAAAATAGTTGGAGCAGTAATGCAGCATATTGTTTATACTGAATATGTA
CCATTATTGGTGAAATTGACACCATACAAAGGCTACAATAGTCATGTTGA
TCCATCCATCATCAATGCGTTTTCACATGCTGCTTTCCGTTATGGTCACT
CACTGGTTCCAAATCACTTTGAGCAGTTGGATAAAGGTTACAACAAGAAG
TATGAACCAGTTTTATTACAAGAAGCTTTTCGAAACCGACACTTAATCAA
TATCCGTGGTATTGAACCAACAATGTTTGGTCTTCTTAAAAACAAAACAC
GGAATGTGGATGACAGATTTGCTTTCTCATTGGCCAGGAAACTGTTTATT
CCAGTTGGACATTCAGGACATTTGGATTTGACTGCGTTAAATGTCCAGCG
TGGCAGAGATCATGGTTTACCAGGTTACAATGCATACCGAAAATTGTGTC
GATTGCCAACATTAAAATCATGGGCTGATGTGCATAGAACCTTGATTGCT
GGAGTTGGAGCTAAACTCCAAAGAGTTTACAAACATCCAAACGATATTGA
TTTGTTTATTGGAGGTATTTCAGAAAGAAATGGACATGGTTACCAAGTTG
GACCTCTCTTTCAATGTATCTTTAAACAACAGTTTGAGGCTCTACGGGGT
GGTGATCGGTTCTTTTATCTGAACCACGGTGTTTTCACTACAGCACAATT
ACATGCTATCAAGAAGGTTTCAATGGCAACAGTCTTATGTAACAACCTGA
AAGGTATTGTGTCAGTCCAACCTAAAGCATTATGGGAAGCTACAGGTCAT
AATATAAGAAAAGTATGTTTTGGTGGTGCCATTCATCAACTTGATTTAAA
TGCATGGAAAGGAGCACAAAATGATTGTCCAGAGAATGATATGGTGAAAG
ATGAGGATGTAAGTAATGAAGAATTGCAAGATGAAATTGATGAAGCAAAG
GAGCAAGAAAATGAAGAGAATGATTCAGAATATGAGGAGATTGTTGCTGA
TGATGATAGTGAAAATGACATGGCAAATGCCTCTGAAAATGATGAAATGA
GTCCTGATATCTCTGATGAGGAATTCAGTATCAAAGCCAAAGAAATTGAA
AAGGAACTACTAAGTGATGAGCAAAGAAACGAAATTAACAATTAA Coding sequence (CDS) from alignment at sc0000113_pilon:960270..964214- >XLOC_042934 ID=XLOC_042934|Name=XLOC_042934|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4320bp|location=Sequence derived from alignment at sc0000113_pilon:960270..964214- (Clytia hemisphaerica_ch_hm2_pilon)
ATGATACGACAAACCTATGATTCATCCAAGAACATCTACAACTATATCAT
TACCATTGACGGTTTAGTCAAAAAGATTGCCAGGAACACAAGACCTACAA
TCTTCAAGAATGTTAAAATGTGGGCAGCAGATCCATGGCATCATGCAGCA
GATGCCATTGTTAGAAATCTAGTTTTCAAGAATTTACCCTATGATGATAC
GACAAACCTATGATTCATCCAAGAACATCTACAACTATATCATTACCATT
GACGGTTTAGTCAAAAAGATTGCCAGGAACACAAGACCTACAATCTTCAA
GAATGTTAAAATGTGGGCAGCAGATCCATGGCATCATGCAGCAGATGCCA
TTGTTAGAAATCTAGTTTTCAAGAATTTACCCTATGGTTATTCATATGAG
AACTGTCAAAGGCCTACACCAAGACATAGTTGTCACTATGCAAGTTCTAT
CAAATCTTACAGATCAGTTGATGGAGGTTGCAATAATCTCAAACACCCAA
CACTTGGTGCAGCTCATACACCTTTGAGGAGGATTCTAAGTTATTCATAT
GAGAACTGTCAAAGGCCTACACCAAGACATAGTTGTCACTATGCAAGTTC
TATCAAATCTTACAGATCAGTTGATGGAGGTTGCAATAATCTCAAACACC
CAACACTTGGTGCAGCTCATACACCTTTGAGGAGGATTCTAAAGGCAGAA
TATGCACGTGATGGTAATCACGATACACCAAGAGGATTCCCAAACACTGA
TCCAGTACTACCACCACCAAACCTGGTCACACAACAATGTTTCCTTACAG
AAACAACATCATCAAGAAGCTCAACACCAAGTCCGTCCACTCTTTTCATG
ACTTTTGGTCAATTCTTGGATCATGATTTCGCACTCTCACATCATGCTGA
TTGCAAACAAAGAGGCAGAATATGCACGTGATGGTAATCACGATACACCA
AGAGGATTCCCAAACACTGATCCAGTACTACCACCACCAAACCTGGTCAC
ACAACAATGTTTCCTTACAGAAACAACATCATCAAGAAGCTCAACACCAA
GTCCGTCCACTCTTTTCATGACTTTTGGTCAATTCTTGGATCATGATTTC
GCACTCTCACATCATGCTGATTGCAAACAAAGATGTAATGACTTCAAAGC
ATGGCAATCTCCATGTTTCCCAATATTGTTCAACAACAGAGATTCCCAAT
GTTCAATGAATGGACGATCATTTGCTGTCTGCTCAAAGAGAGCTTATTTA
GATGACCGACAACAGTCGAATGATATATCTGCATTCATTGATGCTTCAAA
TGTTTACAGTAATGATCCAGCAAGATTCCAAAAGATAAGAGATAATAAAA
ATGTAATGACTTCAAAGCATGGCAATCTCCATGTTTCCCAATATTGTTCA
ACAACAGAGATTCCCAATGTTCAATGAATGGACGATCATTTGCTGTCTGC
TCAAAGAGAGCTTATTTAGATGACCGACAACAGTCGAATGATATATCTGC
ATTCATTGATGCTTCAAATGTTTACAGTAATGATCCAGCAAGATTCCAAA
AGATAAGAGATAATAAAAATGGAAAATTGAAGATGATGAGTAATGGATTA
TTACCAATTGATCGCAATTTTGGACAACATCGATGTAAAATCAAGGGAGG
TTGCTCCTTAGCTGGTGAACAAAGAGTGGATGAAAACATGGCTTTATCCT
CAATGCATACTCTCTGGGCAAGAGAACACAATCGTCTTGTAGCTGGCTTG
AAGAAAATAAATCCTGGTTGGAATAACGAAAGACTTTTCCAAGAAGCAAG
GAAAATAGTTGGAGCAGTAATGCAGCATATTGTTTATACTGAATATGTAC
CATTATTGGTGAAATTGACACCATACAAAGGCTACAATAGTCATGTTGAT
CCATCCATCATCAATGCGTTTTCACATGCTGCTTTCCGTTATGGTCACTC
ACTGGTTCCAAATCACTTTGAGCAGTTGGATAAAGGTTACAACAAGAAGT
ATGAACCAGTTTTATTACAAGAAGCTTTTCGAAACCGACACTTAATCAAT
ATCCGTGGTATTGAACCAACAATGTTTGGTCTTCTTAAAAACAAAACACG
GAATGTGGATGACAGATTTGCTTTCTCATTGGCCAGGAAACTGTTTATTC
CAGTTGGACATTCAGGACATTTGGATTTGACTGCGTTAAATGTCCAGCGT
GGCAGAGATCATGGTTTACCAGGTTACAATGCATACCGAAAATTGTGTCG
ATTGCCAACATTAAAATCATGGGCTGATGTGCATAGAACCTTGATTGCTG
GAGTTGGAGCTAAACTCCAAAGAGTTTACAAACATCCAAACGATATTGAT
TTGTTTATTGGAGGTATTTCAGAAAGAAATGGACATGGTTACCAAGTTGG
ACCTCTCTTTCAATGTATCTTTAAACAACAGTTTGAGGCTCTACGGGGTG
GTGATCGGTTCTTTTATCTGAACCACGGTGTTTTCACTACAGCACAATTA
CATGCTATCAAGAAGGTTTCAATGGCAACAGTCTTATGTAACAACCTGAA
AGGTATTGTGTCAGTCCAACCTAAAGCATTATGGGAAGCTACAGGTCATA
ATATAAGAAAAGTATGTTTTGGTGGTGCCATTCATCAACTTGATTTAAAT
GCATGGAAAGGAGCACAAAATGATTGTCCAGAGAATGATATGGTGAAAGA
TGAGGATGTAAGTAATGAAGAATTGCAAGATGAAATTGATGAAGCAAAGG
AGCAAGAAAATGAAGAGAATGATTCAGAATATGAGGAGATTGTTGCTGAT
GATGATAGTGAAAATGACATGGCAAATGCCTCTGAAAATGATGAAATGAG
TCCTGATATCTCTGATGAGGAATTCAGTATCAAAGCCAAAGAAATTGAAA
AGGAACTACTAAGTGATGAGCAAAGAAACGAAATTAACAATTAAATGGAA
AATTGAAGATGATGAGTAATGGATTATTACCAATTGATCGCAATTTTGGA
CAACATCGATGTAAAATCAAGGGAGGTTGCTCCTTAGCTGGTGAACAAAG
AGTGGATGAAAACATGGCTTTATCCTCAATGCATACTCTCTGGGCAAGAG
AACACAATCGTCTTGTAGCTGGCTTGAAGAAAATAAATCCTGGTTGGAAT
AACGAAAGACTTTTCCAAGAAGCAAGGAAAATAGTTGGAGCAGTAATGCA
GCATATTGTTTATACTGAATATGTACCATTATTGGTGAAATTGACACCAT
ACAAAGGCTACAATAGTCATGTTGATCCATCCATCATCAATGCGTTTTCA
CATGCTGCTTTCCGTTATGGTCACTCACTGGTTCCAAATCACTTTGAGCA
GTTGGATAAAGGTTACAACAAGAAGTATGAACCAGTTTTATTACAAGAAG
CTTTTCGAAACCGACACTTAATCAATATCCGTGGTATTGAACCAACAATG
TTTGGTCTTCTTAAAAACAAAACACGGAATGTGGATGACAGATTTGCTTT
CTCATTGGCCAGGAAACTGTTTATTCCAGTTGGACATTCAGGACATTTGG
ATTTGACTGCGTTAAATGTCCAGCGTGGCAGAGATCATGGTTTACCAGGT
TACAATGCATACCGAAAATTGTGTCGATTGCCAACATTAAAATCATGGGC
TGATGTGCATAGAACCTTGATTGCTGGAGTTGGAGCTAAACTCCAAAGAG
TTTACAAACATCCAAACGATATTGATTTGTTTATTGGAGGTATTTCAGAA
AGAAATGGACATGGTTACCAAGTTGGACCTCTCTTTCAATGTATCTTTAA
ACAACAGTTTGAGGCTCTACGGGGTGGTGATCGGTTCTTTTATCTGAACC
ACGGTGTTTTCACTACAGCACAATTACATGCTATCAAGAAGGTTTCAATG
GCAACAGTCTTATGTAACAACCTGAAAGGTATTGTGTCAGTCCAACCTAA
AGCATTATGGGAAGCTACAGGTCATAATATAAGAAAAGTATGTTTTGGTG
GTGCCATTCATCAACTTGATTTAAATGCATGGAAAGGAGCACAAAATGAT
TGTCCAGAGAATGATATGGTGAAAGATGAGGATGTAAGTAATGAAGAATT
GCAAGATGAAATTGATGAAGCAAAGGAGCAAGAAAATGAAGAGAATGATT
CAGAATATGAGGAGATTGTTGCTGATGATGATAGTGAAAATGACATGGCA
AATGCCTCTGAAAATGATGAAATGAGTCCTGATATCTCTGATGAGGAATT
CAGTATCAAAGCCAAAGAAATTGAAAAGGAACTACTAAGTGATGAGCAAA
GAAACGAAATTAACAATTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000113_pilon | genome | sc0000113_pilon:960270..964214 - |
Properties
| Property Name | Value |
|---|
| Aaloc | 787-2160:1375 |
| Aaloc | 568-783:1906 |
| Aaloc | 349-564:2725 |
| Aaloc | 196-345:3336 |
| Aaloc | 1-192:3946 |
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