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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000248_pilon:346437..351853+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_042913 ID=XLOC_042913|Name=XLOC_042913|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5417bp|location=Sequence derived from alignment at sc0000248_pilon:346437..351853+ (Clytia hemisphaerica_ch_hm2_pilon)
TTCCTTCGTGGAATAAGTAACTCTGTTCAATTTTTATCTAACCTTTCCAA
GTAAGCTATCATTTATTCATTCTCTTACTCAACTTCTATTTGAATGGTTT
CAACTCACCAACACCCTGCTGTGGAATGTCTTAAAACCAATTCAATCTTT
CTGACAAGCTGGTCGACGCTTTCTCCgtcaattgaaaattattttgcacA
GAAACTGAAAAAGTCAACAGAAATAGGAAATAATTTCATTGATTTCCgac
ttttgaaagttttgaaaacatcacaagatttttaaaatggtGTCGCTAAA
AAATTTGAGTAGAAACTCTTCCTCAATTTGACATAACAAAGGTCTTCAAC
TTTTCATGAAAAACGAAAGCACGAGGGGCAGTATTTCATGGGAAAAACAT
TcgcaaataaaaataattttaagtaGTCTTCTTTTTCTCCTTTCAGATTT
GAAGTCGAAAATGAAGATTGCAAAATGAAGAAGGAAATTACCTTTGTCTT
TATTATAGGTAAGTATCACCTGTCAGTATTTCATATCTGTTATCTTTAGC
ATTTCGAAGAGTCATGTTTCCTTTAAACTTTTCAGCGCTTTTCTTTCAGT
GGTGTTACTGGATGTTGTCAGTTGCAATGATGCAGAACTGAGGCTGTTTG
AGAAATTATTCACAGGCTATAACAACAAAGTGAGACCCATCAATGACAAA
TCAAAACCAGTCAACACAACCCTGGATATTGCTTACGTACAGCTTGTCCA
ACTGGTAAGTGCTCTCATgtaacacgtttttttataagcacatctaattt
tttttaaagccttcggatgttcttaaatttttaagtttcgagcctaaaaa
tgttcttaacatgttcttatttcaaccaatttttgaccatttttacccat
tttcctaagaaatcgagtgtttttgaGACCATAAAGCCTTAAATAGTTCC
Tatcttgtttttaacattttggccgtcgaagccttatgttcttatatagt
ttgttcttataaagaaaaagtgtaacacccctgtgtcacccACTGGATCC
CAACCCCACTGAAAGATTTGGCCAAAGTTTCGTCTGTGGGAAAAATGTCT
TCCAATTTCATATCAGTCccattgggaaattgactttgatttcatcccca
tttgaaattcaatgtttagaaattcaatgtttagaaattgcactccaaaa
ctatccccCTAGATTTTTCAAGCCTGGAGCAATAGAATTGtagttttggt
taaaatttttatccctgATGTGGGAAAAGGTTTCACCGgtactgtgagac
agggatttCACATGTAGGTTGTAAACGGCCCTATCAGGAAAAATATTAAC
CGCTCAAGTAGTCATGGATGCTTTCCAATAGGGCATGCAAAACAGTGCAC
TAAGACGTATAAGTATGAAACAGTTTGATCTAACCCTCAAGGCAAAAGAG
CTAGCACCTGTtattgtattttacagaccgaaACAGACTTCTAATAAAAc
ctaaaatcaatttcttttctCCAAAGTATGCCTACATATTGTTAGAAACA
ATTTTAAACTTATTCAGAAAAATATTACAACCTATTTCTGAAAATCATTc
taataaatattgaaaaagtctCATTTTACCTGAAAACATATACGGTTGAA
GTTAAAACATTACGGGCTTCATAAAGAATTTGTTCGTACCATTTTCGATT
CATGATAAATCCAAGATCACGAAGTCCAATATTTCTAACAATTCTGTATT
CGAGTTAAGTTGACTAAATGATTGTCCTTCTTTTTCCTTAGGATGATCGA
GAACAAACTTTGATCAGCAACGTCTGGGTGCGTCAGGTATGTCTTCCATA
GTCTACTTGAAATTGATATAAAACATATTTAACTTTATCACCaacaacaa
attttgaaaagtttcttaAACTTGTGATTTTATCACCATAGTAAACACAC
CCTTTTATTACAGTCCCGCACTGgagaattttggccaaattttttttccc
ggtggaaaaaataccctgcAATTTCACCCCCTGgcaaattgactttgatt
tcaccaCCTGgcaaattgactttgatttcaccaCCTGgcaaattgacttt
gatttcaccaCCTGgcaaattgactttgatttcatccccattcgaagttt
caactgaaaaaaatgcactcaaaaACTATCTCTACTGGTTTTTTAAGCTA
AGAATGATAGAAAATGTTTACCCACCCcctgtagaaaaaaaatttctact
ggggctgtgagacaggggtgtgttcaCTTCAGCTGAAAAAATATTATACT
ctcagtctgttcctctaaaggatcctgcattgtaacacgcatgcgtaatt
gtCGTTCTTTTataccacatgtagttaattcccgtgataaaggAAAGGGA
ATAAAtcggggtggtacagtcactttcggtcggggctgtggacggcgaaa
tatgtcgttttttatgaaatttgtcgttctttttgtctatttttagtaaa
gcaggattctttagataaacccctcTCTAATCTAACCAAATTGTTTACTT
CGGaaaaaaaaTATGGTTCAAAgcctttttaaataaagtttaTTAAAATT
CTTGATTGTTATTTCTTTACACAGAACTGGCAGAATGACAAATTGACGTG
GGATCCGAAGGACTTTGATAACATCACCGTCATTAATGTTCATCCGTCAA
AAGTTTGGCTGCCGGACGTCATTCTTTATAACAAGTGaccgtcttttttt
tcttcgaaagccttctttaaaaatgaaaaatgaaatatgttAAACTCGTT
ACTTTCGAGGGTCACCTCGAAAACAGCGGTAGAGGAGCAGaaaaaaaaaG
ACCACTAGCATAATTACCTTCTTAAGACACtattatttcttcatttttgt
ttttcagcgCGAAGAGTGGCGTGGGAGCAGGCATGATGTATCGTTTCAAG
ACAAAAGTCTCCATTTTTCACAACGGACTTAACAAATGGTATTGAATTAA
CTATTCATATGAAGAATGTCGAAATGATACTTGCTCCAGGGATAtattat
agcggagctggataacgcacatttaaaaagccttgttctatacacccctg
tctcagtgccccggtggcctgatttcagtacatgatttttttcagtacat
ggtttcagtacatgattttttcctacgtcactgcagtaatcaaattttta
ttgcactcatttgtaatcatcctaaatggcttgggaattcaagaactgtt
ttttattgtcgctgtctttattcaatttatatctcaattcacaaatgagt
gcaataaaaatttgattactgcagtgacgtaggaaaaaatcatgtactga
aaccatgtactgaaaaaaatcatgtactgaaatcatgccaccggggcact
gagacaggggtgtttctatctctgtccctgacattaaaatttgatatgaa
ctcgtgaaatttggattttctCTTAGCCCATGATTcagctgctgcattta
tcgttcacgattaaaaacttttaattatcaagagggtctgtaaaacattg
gtgaatggcaatttaaaaaaatgaaaaacattataAACGTTATAAGAAGc
ttcttctctaagattataaatagtactttttcatttgaaataccgcgcta
caccgcggggtgcctcactttctaactgatattttcagatagcaagtcgg
tatgtctgattatggaaaaaatttcaagtcaattgaaacaatatttgtca
aaatatttacatccgaaatttttaaagagaaatcatgaaagcttctcaaa
ttcataacacacgcatataaaaatagatttcatttacaaggaagcttttg
gggtatcttctacaaatattattttgatgaaaagcgggaacatcatagca
aaatatgtgcaaacgtactgcatgaatactttgtctgcttcatttttctt
ataaaaacagaacactcaaggggacagagatggatttctattatcaacag
tttacaatagaaaagacaaagaagcaatccgctaagcaattctcgtcctt
catccagctccgctataaaaTATCCCTGCTTGCTCGGAAGAATAATACTT
CCTAACATTATGCAATTCCCCCAtttttttttCTAGGTACGCACCAGCCA
TCGTTCGGAGCAGTTGTAGTATTGACATCAAAAACTTCCCTTTCGACGAA
CAAAAATGTGACCTGGAGTTCGGTAGTTGGACGTATAATGGATATGAATT
GGATTTGTTCTACGCCAATGACAAAGCTGACACTTCTTTCTATTTGGCAA
GCGctgaatttgatttgatttcagcCAAAGCCAAGCGATTCGTCAAAAGA
TACGAGTAAGAATCATTCCTTATTTAGAAAGAGTAAGCCTGGCCCGCAAA
TTCCTTCCTACCTTTTTCTATATAAAAAGCCTCAATTTTCATAGTACGAA
GGACTTAGAAGATTTAGAACTTCTGTTCATAAAGATTTCGAAATTCTTTG
AGCTGAATATGGTTAAGCTTATTAAAAGATCTtccaaaagataaaaaaaa
gcgAAGGCACGCGTAGGCGAAGAGGGTCAACGGAAGGCTTATCTTGGCGT
CTTTTCCATCTCTTTCAGATGTTGTCCAGAACCATACCCGAATATCATCT
ACACAGTGCACGTGCGTCGCCAACCTGGTTTCTTTCTCTTCAACGTCATC
ATCCCTAGCATGGTTATCACCTTCTTTGCTATTCTCACTTTCTCCTCTCC
TCCCAACGTCGGAGAGCGCATCTCCCTGGCTATCGAATCTTTCCTGTCTT
TGAGTTTCTTGTGTATGATGGTAGCGGACAGTATACCGGTCAATTCGGAT
GTGTCTCCCCTCATCACCAACTTCTTGATGGTGTGTATGATGCTCATCTC
CTTGGCACTAGTTTTTAACATGATCTCCATGAACCTGACTGGCACCAAAC
CCGTACCACGATGGTTACATACACTGGCTTTTGTCTACATTGGACCACTT
GTTGGTTATTGCCGAGATACAAATGCCACCACCAACAGTCTTGGACGATT
CTTTTCATCACGCGTGCCAagtaaaatcgaaaataaaGTCAGGTTTATGA
TTCACAAGTTGCATACTCAGTTATccgagaaaaaattgtattacggAGAG
AAAATGTTGCGCCACCTTTGCCGTTCAGAACATTGCATGCCACAAAACAG
GGAGGAGGTTCTTCACGAAGAGGAGAGACAAAATATGCGACAAATCTTGA
AACGCTCCTCCGTAGAGAACAATCAAAAGTTCAACCGTGATTTCTGGCGA
TGTATCGCACAAACTGTGGATCGTGTTTGCGTTGTCAGCTTCTCGACCAG
TTTCTTGTTCGTCTCCGCCGCTGTCCTCATGAAGGGGTATGGACACCAAt
tagaattacaaaaataa Coding sequence (CDS) from alignment at sc0000248_pilon:346437..351853+ >XLOC_042913 ID=XLOC_042913|Name=XLOC_042913|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3042bp|location=Sequence derived from alignment at sc0000248_pilon:346437..351853+ (Clytia hemisphaerica_ch_hm2_pilon)
TTCCTTCGTGGAATAAGTAACTCTGTTCAATTTTTATCTAACCTTTCCAA
TTCCTTCGTGGAATAAGTAACTCTGTTCAATTTTTATCTAACCTTTCCAA
ATTTGAAGTCGAAAATGAAGATTGCAAAATGAAGAAGGAAATTACCTTTG
TCTTTATTATAGATTTGAAGTCGAAAATGAAGATTGCAAAATGAAGAAGG
AAATTACCTTTGTCTTTATTATAGTGGTGTTACTGGATGTTGTCAGTTGC
AATGATGCAGAACTGAGGCTGTTTGAGAAATTATTCACAGGCTATAACAA
CAAAGTGAGACCCATCAATGACAAATCAAAACCAGTCAACACAACCCTGG
ATATTGCTTACGTACAGCTTGTCCAACTGTGGTGTTACTGGATGTTGTCA
GTTGCAATGATGCAGAACTGAGGCTGTTTGAGAAATTATTCACAGGCTAT
AACAACAAAGTGAGACCCATCAATGACAAATCAAAACCAGTCAACACAAC
CCTGGATATTGCTTACGTACAGCTTGTCCAACTGGATGATCGAGAACAAA
CTTTGATCAGCAACGTCTGGGTGCGTCAGGATGATCGAGAACAAACTTTG
ATCAGCAACGTCTGGGTGCGTCAGAACTGGCAGAATGACAAATTGACGTG
GGATCCGAAGGACTTTGATAACATCACCGTCATTAATGTTCATCCGTCAA
AAGTTTGGCTGCCGGACGTCATTCTTTATAACAAAACTGGCAGAATGACA
AATTGACGTGGGATCCGAAGGACTTTGATAACATCACCGTCATTAATGTT
CATCCGTCAAAAGTTTGGCTGCCGGACGTCATTCTTTATAACAAcgCGAA
GAGTGGCGTGGGAGCAGGCATGATGTATCGTTTCAAGACAAAAGTCTCCA
TTTTTCACAACGGACTTAACAAATGcgCGAAGAGTGGCGTGGGAGCAGGC
ATGATGTATCGTTTCAAGACAAAAGTCTCCATTTTTCACAACGGACTTAA
CAAATGGTACGCACCAGCCATCGTTCGGAGCAGTTGTAGTATTGACATCA
AAAACTTCCCTTTCGACGAACAAAAATGTGACCTGGAGTTCGGTAGTTGG
ACGTATAATGGATATGAATTGGATTTGTTCTACGCCAATGACAAAGCTGA
CACTTCTTTCTATTTGGCAAGCGctgaatttgatttgatttcagcCAAAG
CCAAGCGATTCGTCAAAAGATACGAGTACGCACCAGCCATCGTTCGGAGC
AGTTGTAGTATTGACATCAAAAACTTCCCTTTCGACGAACAAAAATGTGA
CCTGGAGTTCGGTAGTTGGACGTATAATGGATATGAATTGGATTTGTTCT
ACGCCAATGACAAAGCTGACACTTCTTTCTATTTGGCAAGCGctgaattt
gatttgatttcagcCAAAGCCAAGCGATTCGTCAAAAGATACGAATGTTG
TCCAGAACCATACCCGAATATCATCTACACAGTGCACGTGCGTCGCCAAC
CTGGTTTCTTTCTCTTCAACGTCATCATCCCTAGCATGGTTATCACCTTC
TTTGCTATTCTCACTTTCTCCTCTCCTCCCAACGTCGGAGAGCGCATCTC
CCTGGCTATCGAATCTTTCCTGTCTTTGAGTTTCTTGTGTATGATGGTAG
CGGACAGTATACCGGTCAATTCGGATGTGTCTCCCCTCATCACCAACTTC
TTGATGGTGTGTATGATGCTCATCTCCTTGGCACTAGTTTTTAACATGAT
CTCCATGAACCTGACTGGCACCAAACCCGTACCACGATGGTTACATACAC
TGGCTTTTGTCTACATTGGACCACTTGTTGGTTATTGCCGAGATACAAAT
GCCACCACCAACAGTCTTGGACGATTCTTTTCATCACGCGTGCCAagtaa
aatcgaaaataaaGTCAGGTTTATGATTCACAAGTTGCATACTCAGTTAT
ccgagaaaaaattgtattacggAGAGAAAATGTTGCGCCACCTTTGCCGT
TCAGAACATTGCATGCCACAAAACAGGGAGGAGGTTCTTCACGAAGAGGA
GAGACAAAATATGCGACAAATCTTGAAACGCTCCTCCGTAGAGAACAATC
AAAAGTTCAACCGTGATTTCTGGCGATGTATCGCACAAACTGTGGATCGT
GTTTGCGTTGTCAGCTTCTCGACCAGTTTCTTGTTCGTCTCCGCCGCTGT
CCTCATGAAGGGGTATGGACACCAAttagaattacaaaaataaATGTTGT
CCAGAACCATACCCGAATATCATCTACACAGTGCACGTGCGTCGCCAACC
TGGTTTCTTTCTCTTCAACGTCATCATCCCTAGCATGGTTATCACCTTCT
TTGCTATTCTCACTTTCTCCTCTCCTCCCAACGTCGGAGAGCGCATCTCC
CTGGCTATCGAATCTTTCCTGTCTTTGAGTTTCTTGTGTATGATGGTAGC
GGACAGTATACCGGTCAATTCGGATGTGTCTCCCCTCATCACCAACTTCT
TGATGGTGTGTATGATGCTCATCTCCTTGGCACTAGTTTTTAACATGATC
TCCATGAACCTGACTGGCACCAAACCCGTACCACGATGGTTACATACACT
GGCTTTTGTCTACATTGGACCACTTGTTGGTTATTGCCGAGATACAAATG
CCACCACCAACAGTCTTGGACGATTCTTTTCATCACGCGTGCCAagtaaa
atcgaaaataaaGTCAGGTTTATGATTCACAAGTTGCATACTCAGTTATc
cgagaaaaaattgtattacggAGAGAAAATGTTGCGCCACCTTTGCCGTT
CAGAACATTGCATGCCACAAAACAGGGAGGAGGTTCTTCACGAAGAGGAG
AGACAAAATATGCGACAAATCTTGAAACGCTCCTCCGTAGAGAACAATCA
AAAGTTCAACCGTGATTTCTGGCGATGTATCGCACAAACTGTGGATCGTG
TTTGCGTTGTCAGCTTCTCGACCAGTTTCTTGTTCGTCTCCGCCGCTGTC
CTCATGAAGGGGTATGGACACCAAttagaattacaaaaataa
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000248_pilon | genome | sc0000248_pilon:346437..351853 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 724-1521:4620 |
| Aaloc | 505-720:4138 |
| Aaloc | 424-501:2909 |
| Aaloc | 313-420:2625 |
| Aaloc | 268-312:1792 |
| Aaloc | 115-267:602 |
| Aaloc | 52-111:448 |
| Aaloc | 1-48:1 |
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