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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000248_pilon:281065..283710- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_042884 ID=XLOC_042884|Name=XLOC_042884|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2646bp|location=Sequence derived from alignment at sc0000248_pilon:281065..283710- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGATGTTTACTTCGAGGAAGTTTCGCACCAACAACACAACAACCAAAT
ACTCATTGTGGGTGAAGGGAATTTTTCTTTTGCAAAAGAATTTGCTCTCG
CTTCTAACAAAAAGTACACCATCTACGCAACGTCGTTCGATTCGAAAGAA
ACAGTTCACAAAAATTCATTCGCCAAAGAGAATGTGGAAACACTCGCTAC
ACAACATAACGTCAGAGTTCTACACAGCATCGATGCTACTGATCTGGAGA
GGTTTTTTCAAGGGCAATATTTATCGAAAATCATTTTCAACTTCCCACAT
GTGGGTGGGAAATCCAACATCAAGAAATGTCGACAATTATTGAAGAACTT
TTTCATCAGCGCTTCCAATCATCTTTGCGAGGAAGGGCGTGTTTTAGTGG
CGTTATGTCAAGGTCAGGGTGGAACGCCCCTAGATGCAGATAGAGGAGGT
TATGGGAACACTTGGCAAGTTGTTTCACAAGCCGAATTCTCCGGTAAGAT
TTTACTTTACTACAGTCTGCCCTTTACTTGGTAAGAAAATAGTAATCACA
TTAAAACATGTCATTTGTGTTTTTCAGGATTCATATTGAAAGATATTCGA
CCTTTTCATTTTGGACAACTGAAAGAATACAAACAAGCTGGATATCGTGG
ACAGATCGGATCCGGTTTTTTGACACGAGGAGGATTTGTTCATGTTTTCG
CCATGGGAAAGAAATGTATGAACCCTGCTCCTCCATATCTTCAACTAGGG
TAAGATCTAATTGAGAAGTTCATTTTTCAAAAATGATACCTAGGTTTTGA
TGCAAAACCCTGCCTGCCTTAACCTTTTGTGCGTGTTGTTATTTTGAATT
TCTTTTTAGATTTTCAAAATGTTCAAAAGCTTTTAGCGTGAGAGTTATGA
GCTCATGTTCGTACCATTGGACAGCTATTTTTTTAACTCTTTCTGAAAAG
AATCGTTTTTTTTACCATTTTCGAATTCCTTTTTTAGATGTGAAGTGCCA
CAAATCCAAAAGGATATTCTACTTTTCAAAAGTCGGATGGAATATTCCAA
GATTGCTTTTAACGCCATCCGAAATCTTTTACATAGTTTGATCGCTGAAA
AATTCACCAATCTGGATGATTACTCTGATTTTTCAATCCCGGGGAAAGAA
GATGCTCTAGTAGATAAAGATGGAGTTCTGTGGGCTAGGCAAATCTCACA
TAAAATGATAACTGAGATGTCACGCAAATGTAATGCCCCCTTTTTTCACT
TTCGATCGAATCTCCTTGATGTTGCTGCTCCAGTAAACCCTATGATATCC
GGACTATCCCAAAATGCAATTTTCGTAAACAAAGAAAAATGTGATATTGA
TGACATCATGAGTCACGTGTTTCATTGTTTCGATATCAAAACAAAAGATT
GCCATGGAGATTCTATAGAAACAAAGTCACAATTTGAAGTACGGTCAAAT
CCGATTTATCCTGACTTTGCAAACGAAAAGGGGAAAGGGAGATCAGAGGA
TGTGGACATCAACCAAGTGCCAGCCTTCATTGAGCAATTACCAGCCAAAT
ATTGGCGATCGTTTGAACCAGAATGCGTCATCTCGAGTGCGGATGAACAA
GGTGTGGTCGAATATCAAAACATCTCCTGTCACGATTACAATCTGAATTC
ACTGGAAGAACATTATTTCGGTCGAGATAAGTACTTGATTGCCGAGGAGA
AAACATCTCAACGAAAAGTATTGATCGAAGGCCATTGCGTTTTGACAATC
CTTCACTACAAAGAAGAAGATGTTACAGTGTTCATTTTTCATCTGGATCA
AATCTTGTTAGCGTGTTACGGTGTGTTGGACGTCCGCTGGCTTTATACTG
AAGATGAGATGTTCCATTCGCTGTTGATAGACACACTTGTAAGCAAATTT
TTACTTCCCATTAAATTCACGTCCTTAATTTCCTTGATTCTACCATTTTT
TCTGTAACGTCATATAGATGGCTTCATGAAATGCATGTGTGAATATAGGT
TGAATAGAATTGGGTTCTTGATACTCTCAAAACTCGTGCAAGCTTATACA
AGAGACTGCAGGTATAAAACTTTTCCATAATAGGCACCTATTATGCCCCT
AGAATCCGCCTTGTAGCCACTACCTCATTACAGGAAAATAAGTAGACAAG
TATTTGTCGGCCTTGAAATTCAGTTCGTGTTAATTACGCACCTATTTATT
TTTGTGTAAATATAGATTAAATACGCAGGATTGTTGATGTAAACTTTGAA
AGGGAATCAGACTAGCTACTGTTTCCCGAGTGTTCTGACATTTTTATTTT
CCCTTTATAGAACAAGGATGTTGAGAATCAAAGAATATCGAATTTAGAGC
GAGAATATTTGAGAAGCATTAAGTTTTCGTTATGCCACCGTCATGATTTG
TGTTTTTGGTTGGATGAAAAACACACCGAAAGAGATTTATTTGCCTCTAT
TCGTCAACTGTGCGGTGGCAACGTCCATTCTGTTCGCTTGATTAAAGTTC
TAAAACATACGGAAAGCAACGTGGTGAGTTTTTGCTATCGCATGATTTAC
AGACGTTTGGACGGCCCCTTTCACCATGAAGTTTGTGTGAAAATGCAGAA
CAAACTACGCTTGTATTTGTTAACGATGGGATTCTCGTTGAGGTGA Coding sequence (CDS) from alignment at sc0000248_pilon:281065..283710- >XLOC_042884 ID=XLOC_042884|Name=XLOC_042884|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3804bp|location=Sequence derived from alignment at sc0000248_pilon:281065..283710- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGATGTTTACTTCGAGGAAGTTTCGCACCAACAACACAACAACCAAAT
ACTCATTGTGGGTGAAGGGAATTTTTCTTTTGCAAAAGAATTTGCTCTCG
CTTCTAACAAAAAGTACACCATCTACGCAACGTCGTTCGATTCGAAAGAA
ACAGTTCACAAAAATTCATTCGCCAAAGAGAATGTGGAAACACTCGCTAC
ACAACATAACGTCAGAGTTCTACACAGCATCGATGCTACTGATCTGGAGA
GGTTTTTTCAAGGGCAATATTTATCGAAAATCATTTTCAACTTCCCACAT
GTGGGTGGGAAATCCAACATCAAGAAATGTCGACAATTATTGAAGAACTT
TTTCATCAGCGCTTCCAATCATCTTTGCGAGGAAGGGCGTGTTTTAGTGG
CGTTATGTCAAGGTCAGGGTGGAACGCCCCTAGATGCAGATAGAGGAGGT
TATGGGAACACTTGGCAAGTTGTTTCACAAGCCGAATTCTCCGATGGATG
TTTACTTCGAGGAAGTTTCGCACCAACAACACAACAACCAAATACTCATT
GTGGGTGAAGGGAATTTTTCTTTTGCAAAAGAATTTGCTCTCGCTTCTAA
CAAAAAGTACACCATCTACGCAACGTCGTTCGATTCGAAAGAAACAGTTC
ACAAAAATTCATTCGCCAAAGAGAATGTGGAAACACTCGCTACACAACAT
AACGTCAGAGTTCTACACAGCATCGATGCTACTGATCTGGAGAGGTTTTT
TCAAGGGCAATATTTATCGAAAATCATTTTCAACTTCCCACATGTGGGTG
GGAAATCCAACATCAAGAAATGTCGACAATTATTGAAGAACTTTTTCATC
AGCGCTTCCAATCATCTTTGCGAGGAAGGGCGTGTTTTAGTGGCGTTATG
TCAAGGTCAGGGTGGAACGCCCCTAGATGCAGATAGAGGAGGTTATGGGA
ACACTTGGCAAGTTGTTTCACAAGCCGAATTCTCCGGATTCATATTGAAA
GATATTCGACCTTTTCATTTTGGACAACTGAAAGAATACAAACAAGCTGG
ATATCGTGGACAGATCGGATCCGGTTTTTTGACACGAGGAGGATTTGTTC
ATGTTTTCGCCATGGGAAAGAAATGTATGAACCCTGCTCCTCCATATCTT
CAACTAGGGATTCATATTGAAAGATATTCGACCTTTTCATTTTGGACAAC
TGAAAGAATACAAACAAGCTGGATATCGTGGACAGATCGGATCCGGTTTT
TTGACACGAGGAGGATTTGTTCATGTTTTCGCCATGGGAAAGAAATGTAT
GAACCCTGCTCCTCCATATCTTCAACTAGGATGTGAAGTGCCACAAATCC
AAAAGGATATTCTACTTTTCAAAAGTCGGATGGAATATTCCAAGATTGCT
TTTAACGCCATCCGAAATCTTTTACATAGTTTGATCGCTGAAAAATTCAC
CAATCTGGATGATTACTCTGATTTTTCAATCCCGGGGAAAGAAGATGCTC
TAGTAGATAAAGATGGAGTTCTGTGGGCTAGGCAAATCTCACATAAAATG
ATAACTGAGATGTCACGCAAATGTAATGCCCCCTTTTTTCACTTTCGATC
GAATCTCCTTGATGTTGCTGCTCCAGTAAACCCTATGATATCCGGACTAT
CCCAAAATGCAATTTTCGTAAACAAAGAAAAATGTGATATTGATGACATC
ATGAGTCACGTGTTTCATTGTTTCGATATCAAAACAAAAGATTGCCATGG
AGATTCTATAGAAACAAAGTCACAATTTGAAGTACGGTCAAATCCGATTT
ATCCTGACTTTGCAAACGAAAAGGGGAAAGGGAGATCAGAGGATGTGGAC
ATCAACCAAGTGCCAGCCTTCATTGAGCAATTACCAGCCAAATATTGGCG
ATCGTTTGAACCAGAATGCGTCATCTCGAGTGCGGATGAACAAGGTGTGG
TCGAATATCAAAACATCTCCTGTCACGATTACAATCTGAATTCACTGGAA
GAACATTATTTCGGTCGAGATAAGTACTTGATTGCCGAGGAGAAAACATC
TCAACGAAAAGTATTGATCGAAGGCCATTGCGTTTTGACAATCCTTCACT
ACAAAGAAGAAGATGTTACAGTGTTCATTTTTCATCTGGATCAAATCTTG
TTAGCGTGTTACGGTGTGTTGGACGTCCGCTGGCTTTATACTGAAGATGA
GATGTTCCATTCGCTGTTGATAGACACACTTATGTGAAGTGCCACAAATC
CAAAAGGATATTCTACTTTTCAAAAGTCGGATGGAATATTCCAAGATTGC
TTTTAACGCCATCCGAAATCTTTTACATAGTTTGATCGCTGAAAAATTCA
CCAATCTGGATGATTACTCTGATTTTTCAATCCCGGGGAAAGAAGATGCT
CTAGTAGATAAAGATGGAGTTCTGTGGGCTAGGCAAATCTCACATAAAAT
GATAACTGAGATGTCACGCAAATGTAATGCCCCCTTTTTTCACTTTCGAT
CGAATCTCCTTGATGTTGCTGCTCCAGTAAACCCTATGATATCCGGACTA
TCCCAAAATGCAATTTTCGTAAACAAAGAAAAATGTGATATTGATGACAT
CATGAGTCACGTGTTTCATTGTTTCGATATCAAAACAAAAGATTGCCATG
GAGATTCTATAGAAACAAAGTCACAATTTGAAGTACGGTCAAATCCGATT
TATCCTGACTTTGCAAACGAAAAGGGGAAAGGGAGATCAGAGGATGTGGA
CATCAACCAAGTGCCAGCCTTCATTGAGCAATTACCAGCCAAATATTGGC
GATCGTTTGAACCAGAATGCGTCATCTCGAGTGCGGATGAACAAGGTGTG
GTCGAATATCAAAACATCTCCTGTCACGATTACAATCTGAATTCACTGGA
AGAACATTATTTCGGTCGAGATAAGTACTTGATTGCCGAGGAGAAAACAT
CTCAACGAAAAGTATTGATCGAAGGCCATTGCGTTTTGACAATCCTTCAC
TACAAAGAAGAAGATGTTACAGTGTTCATTTTTCATCTGGATCAAATCTT
GTTAGCGTGTTACGGTGTGTTGGACGTCCGCTGGCTTTATACTGAAGATG
AGATGTTCCATTCGCTGTTGATAGACACACTTAACAAGGATGTTGAGAAT
CAAAGAATATCGAATTTAGAGCGAGAATATTTGAGAAGCATTAAGTTTTC
GTTATGCCACCGTCATGATTTGTGTTTTTGGTTGGATGAAAAACACACCG
AAAGAGATTTATTTGCCTCTATTCGTCAACTGTGCGGTGGCAACGTCCAT
TCTGTTCGCTTGATTAAAGTTCTAAAACATACGGAAAGCAACGTGGTGAG
TTTTTGCTATCGCATGATTTACAGACGTTTGGACGGCCCCTTTCACCATG
AAGTTTGTGTGAAAATGCAGAACAAACTACGCTTGTATTTGTTAACGATG
GGATTCTCGTTGAGGTGAAACAAGGATGTTGAGAATCAAAGAATATCGAA
TTTAGAGCGAGAATATTTGAGAAGCATTAAGTTTTCGTTATGCCACCGTC
ATGATTTGTGTTTTTGGTTGGATGAAAAACACACCGAAAGAGATTTATTT
GCCTCTATTCGTCAACTGTGCGGTGGCAACGTCCATTCTGTTCGCTTGAT
TAAAGTTCTAAAACATACGGAAAGCAACGTGGTGAGTTTTTGCTATCGCA
TGATTTACAGACGTTTGGACGGCCCCTTTCACCATGAAGTTTGTGTGAAA
ATGCAGAACAAACTACGCTTGTATTTGTTAACGATGGGATTCTCGTTGAG
GTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000248_pilon | genome | sc0000248_pilon:281065..283710 - |
Properties
| Property Name | Value |
|---|
| Aaloc | 1570-1905:337 |
| Aaloc | 1186-1569:1143 |
| Aaloc | 667-1182:1659 |
| Aaloc | 496-663:2068 |
| Aaloc | 1-492:2647 |
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