XLOC_042738 (mRNA) -

Overview


Name	XLOC_042738
Unique Name	XLOC_042738
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000108_pilon:1094378..1099908-
coding sequence from alignment at sc0000108_pilon:1094378..1099908-

mRNA from alignment at sc0000108_pilon:1094378..1099908-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_042738 ID=XLOC_042738|Name=XLOC_042738|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5531bp|location=Sequence derived from alignment at sc0000108_pilon:1094378..1099908- (Clytia hemisphaerica_ch_hm2_pilon)
ATGAGGAGATTTTTGAATGTTCTGTTGGTAACAATTTTTTACTGTTTGGT
GTTATTTTTGAAATGTTTTGAAAGTTTGCCAGTGACAAATCAAGTTGTGT
TGGATCATCATTCGTTGGTAAGGTTGGACTACGTTTTTTAAGTGTGCCAA
ACTAAGTGTTTTAGTTATTTTGCAAGGTTTGAGATGTTTAAAGGGCCGTC
CATATTGTGCATATGTAGTTAGGGGGGAGAAGTCAAGAGGGTTTACCAAA
AGCGTACAACTATTGTTTAATTGACGGCATTTCTATAGTTCTCCGTGTGT
ACAAGGGGGAGAGGGTGTCAAATATTTGGATGACCCTCAGGGTGATGTCA
CTTTTCGAGGGACATTTTATAATTGCTAAAAATGAAATTCCATTTTTGTT
TTTCGTTCATTTACTACCTCTCTTTTTCAGGTGCGATTGAAACAATGGGG
TTACATCAGTTCTGATGATTCAGAAGTGAAAAGTAATACCAACCCTATCC
AGCAACTGAGACTCACTCATAAATTGGTTGACGCGTTAAAAACTTTCCAA
AGGTATTTTCAAAATTCATTTTGTATTTTATTTTCGGATATTCCACAGCT
GTTACAAAAAAAATATTACATCATTGAAACACCTGTCTCTCTAAACGATG
GTCGGTAGCAGGTAGAGAATAAAGAAGCTTCTTCCAAACTAATGTGGTCG
AATAAAAATCCACTTCTGAAAATCAACTATCCCTGGACTAGGGAATCAAT
TATTTTTTCCTGTGAAGCACAAATGAAAAAGGAAAATACGTAATACTTAA
GGCAAAAAATTTAAAGTTTTATTGATATATGATATATATATCTATTTTTT
CAATGAGTCAATATGATGGGATATTATTTTTTTAACTTCCTACTTCTCAC
GAACGAACTTATCAAAATCAGGTGATTTACTAATCAATGAGATAATTGGG
CAGTATCAGCGATTTCGATAGATTCCCTGTTGTGGTGTAAAGGATTATAG
AGTAATTAGTTTCGGTTGAAATGAATAGGAGACTAAATTGATCAAGCTAT
TTTAAGATTAAGATTAAAAATTTTTGATGCTTCAGCAAGTCGGACATTAA
TCGTTCTGATGAAAAATATACAACAGTTTTAAGCTCTACAACAAATTCTA
CGACAGTTTTATGCGTTGTGTCAAACTCACTCAAACATCCGACACAAGTG
ACCCTTTTAACACCTAATCGCAATATTTTTGAAATTCCAGTCATAAAAAG
AATGACTTCCATCCTGGTTTATATCTAGTTCCTCCACCTTGTTCAAAAAG
CCAATCGGCTTATCCAAGAAGTTTTAGTGATGCTTCATTTAATTTTTTTA
CCTAACAGCTTCCTTCTCGACATCTCTCTTTTTTAGAAAGTCTGATACCT
CTGGCGATAAAACGCAAAATTCTACATGCCGGGCGACAATATCTGCGTTT
GTGTTTGCTGTGTCCATAAGAAAAACAATCCGTCATCCCTCTCTTTTTGT
TTAGGTTCGCTTATTTGGAGCCAACCGGTCGTTTGGATAATGCAACCCGA
GAAAAGATGGCTGCACCGAGATGCGGAATGCCTGATGTCATCCCCGCAGA
AATTAAAAACCGTATTAAAAAACGATTCGCTGCGCAAGGCTCCAAATGGC
AAAACAGGGTAAGTGCGATAATAATAATACCAAGTTTACTTTCATTTTAG
TAAGCGTTGCATATTCTGATTTGTAAGTCTTCTGCACAATCATCTACTAA
AGTCTGACTCATAATCCGCAGCGGAAACAAAAAGGCTGTAACTTTTGATA
GAATTCGAATTAGATGGCGGTTTTGTGTTCGTTAAAAAGATATTCCGGAG
TGGAATATCATGTAAAAGAAAAACAATCCAAAAAGAATTGAAAATGAGGA
TGGGAAAATGAAGAAAATCAACTACTTGTAAAATTGCGCTATGATCTTAT
AATTATTTTTAGACAGACTTTTAAGAGGATTCTGAATTTGCATGTAATGA
ATTGAATCGAGAGGAGTGAACAATAAATTTCTTTACTGTGGTCTGTCACT
AGGTGGTCACGTGGCAACTGGAGAACACAAATAACGACGGATTAACGGTG
GCACAAGTTCGTGAATACATGACAAGATCACTCAAAAAGTGGTCTGACGC
TGCAAACATCGACTTCAGAGAAATCCCTCCGACTCCAGCAGGCCCGCAAG
CACCGGCCTCTCAGATCCGAGTACAGTTTGGTCAAGGGAACCATGGTGAT
CAGTTTCCTTTCGATGGGCCTTCAGGGACACTGGCTCATGCTTTCTTCCC
TCTCAGCAATGTTGGTAAGAACTTCTGCTTTTCAATATCTTTCAATTTCA
ATTTTCGCACAAAATCAGAATGATTCATAAATATACTCTTTATCCCATGG
CCAGAGAAAGAAACATAAAAGCGATTTATTTGAGCACAACTTGACTTTAC
AAACAATCTAAAGCTAAATTTCAGAAATCTTCTTCTGAATCTGAAGGCAA
TGACCTGATTCCTATTTCTTCGATCTGTGAATTCTCACGTGATATGCCTA
TAGTCTCTACTGGTCTGGTAATTCTTATCTACCTGATGTATAAATGGCAA
CGTCAATATATCACATGAGATATAGAAAACACGATGGTAGATTATATACC
TGATAGGTCTTTTCATAAATTACTTTTGAGTGCAACGACTGCCTCGTTTT
TAAACCATCACCAAGTTGATTAAATTCCTTGAGTCTCCAGTTTTGATTAC
TTTCTTGACTTTCAATTACCCTTGCAATATTATGAAAGCGAGGTAAGCGA
TACTCGTGACGTAATTTATGAAAACGTCTATTGCGATATTACCGCAATTG
ATGGTTACCTTTTACTATTTCTTAAAATCGTTTTCTTCATATATACTAAA
AATACGTTTTGCAGGTTTATCAGGGGACATCCACTTCGATGATGCTGAGC
GTTACACCATCCTTGATCCACCACGTAGTAGTGGCCTCATCAAATTCTAC
TGGGTAGCGGTGCACGAGTTGGGACATTCCCTCGGGTTATCACACTCTGA
GTTGTTTGGTGCGATCATGTATCCTTTTTACACGCACTTCCCTGGATTGG
AATTCAACCTGACGCAAGATGATATTCTCGGCATACAATCCATTTATGGT
AAGAGAACCGATCTAGGTGTTCAGTTCATTTAAATTTCCTCTGTTAACAA
GTCATAGTTCAGGACCGTCGCATGTTTAGCCCATAAAGGTCAGTAGTAGT
GAATCTTGCTAGTAGAAAGAATAAAATTCAGTGTAAACACATTCTTTTCG
TGAGATTTCTATCCAGGAATTTTATTTCCAGAAACTTTTTTACGATTAAT
AATCAAGTTTGACGATTGAAATTTAAGTAGATGACGACACAGCGTAGGAA
AGAAAAACTCTCTATCAATTTACCTCTTTATGTTAGAAGCGGTAGGGATG
ATGCATAGGAGAGCTGTTTTGCATAAGCCAAAACACCAGTCACTTTACTT
TTCCCGCTTTTTTTCTTTACATAGGCGAGAAATCAGGGGCGTTCGGTCCT
TCTGCTCCACCCTCTCCTTTCACCACCCTGGGGTTTGTTTTGGTTGGCAG
TCTGATACATTGGTTGTTGATGTTGTAAAGCATTCATCTCCTTCGTAGGT
GCAAGAACAGCCACCAGTAGCTCCTCGACCACCACAACAACCACAACGAC
AACGACAGAAAAAGAAGCCACTGCACGCCCAACACAACAAACGCCCTCCC
CTCAAACACAAGGTAAATGTCTCTAAATTCTTGCAAACCTTGCCAAGAGC
CAATAAATACAAATATAACTTGTGATTGAAATACATCGGAACAAAATTGG
TAAAATTGGGACAACCCTTTATCGCGTTTATTTTTTCCTCGTCTTCTCCA
GCTACTACAACGACCACCACCACCACCACAACAACAACGACCACTCAAGC
CCCAACGACATGCATCAAAAGAGCAACTGCAATCACTCTCTATAACGGCG
TGGACCCTTTCATTTTCAACGACCGTTTGTTGTACATCAGTAATTCAACA
GGGTACGTGCGCCCACAGTTTGACGGATCATTCACAAAGAAAGTGGACGC
CGTTCACGGGAAAGTCGGGAACGCAAATCACGTGGTCTTCATGCACGACA
CGACGTACGTATTTATTACACACGCCCTTCTCTTTATTCTCCTGTTTATT
TGAACCCCACGTATTCGAAATTTTTGGCTAAAATTCAGTTGGTTTCCCCT
CAAACTTTTAAATACTCAATTACTTTTAATTCAGCTGTAAACCCTCGGTT
ATTTAAACTTCAGTTATTCGAAACTTCAAAACTCTTGGTTTAGAGCTAAT
TTTCCCTCAAATACTCGAAGTTTATTTATAAACTTTATAGTAAAGATTAA
ACCCTTTTAGGACACACACAACTTCTTCGTATTTATTATTGAATATGGAG
CTTACCAATCAAAAACATCTACGGAGACAGATCGGTTCAAAGTCTTTGTG
TTTAAAAAAATGTGATTTTTCCCTCTTTAGATTCACTGTATACGACCGGC
GTACAAACGGGATCGTTTATCCGGAACGAAAGATTTCCGATGGTTATCAG
GGTTTACCAGACGGTTTTGAGATTCCAGACACAGCTTTCATTTACCCTAG
CAACAATAAATTGTATATGTTTAAAGGTAAAAATTTTTATTAAATCCATG
CCTATATTTTACTTTTATTCTATGACACATAGAAAGCAGATACGCTTTGC
AAAATAGCGCGGTTCCTTTGTATCGATGAGGCGTCTTCAAAAACTGACCT
GCTGATAGAGAGTCCATGAAATGACTTTTTTGAAACCTAAAATCAAGCAG
GTTGTTTTTTCACTAAATTACAACATACCCTCCTTCCACTTACAACAAAC
ATCTCCTCATTTTCCAGGAGACAAATATTGGAGGTTCACCGAGAACAAAG
CTTTAGACTACGAGCTTGATTTCGACTATCCGAAGAAAATACACATCCAC
TGGCCAGGTGTTCCTGATGACCTGGATGCTGCTTTCGTTTACACCAATAA
AGACATCTACTTCCTGAAAGGTGAGTCAAATATGGTGGTAAAGCTTGGGA
CGGAACTGAAGGCTGGTTAGGATGTCCAGACATCACGGTGATCAGTATTC
GCTCCGGTATAGTTTTCGTTACGGAAAGGAAATGTTCATATTCGTTTCGG
AACAATAAAACGGAGTAGTATAGTTCCGATGCAAATATTTTCTTCAAGAA
ATTAGCAGTGTTGAAATGAATGATTTCTACACAAAAGCGTATTATGTTCT
TTCGATCTTTGTTTTTCCTTAGGAGAAGAGTACTATCGATTCGATACGAA
ACGGATTGAAACTCGATCTGGTTATCCTCGCCAAAACGAACTTGGCTTCT
TAAGATGTGAAACGTCGATTCAAAACGCGAACGCTGTGCTACAAAACCTA
AATTTCTATTCGTCGGCATTTCTCACAAAAAGTAACATTTTATTTTTAAT
CTTTGCACTTTTTGTTCCTTATCTCTTGTAA

Coding sequence (CDS) from alignment at sc0000108_pilon:1094378..1099908-

>XLOC_042738 ID=XLOC_042738|Name=XLOC_042738|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3528bp|location=Sequence derived from alignment at sc0000108_pilon:1094378..1099908- (Clytia hemisphaerica_ch_hm2_pilon)
ATGAGGAGATTTTTGAATGTTCTGTTGGTAACAATTTTTTACTGTTTGGT
GTTATTTTTGAAATGTTTTGAAAGTTTGCCAGTGACAAATCAAGTTGTGT
TGGATCATCATTCGTTGATGAGGAGATTTTTGAATGTTCTGTTGGTAACA
ATTTTTTACTGTTTGGTGTTATTTTTGAAATGTTTTGAAAGTTTGCCAGT
GACAAATCAAGTTGTGTTGGATCATCATTCGTTGGTGCGATTGAAACAAT
GGGGTTACATCAGTTCTGATGATTCAGAAGTGAAAAGTAATACCAACCCT
ATCCAGCAACTGAGACTCACTCATAAATTGGTTGACGCGTTAAAAACTTT
CCAAAGGTGCGATTGAAACAATGGGGTTACATCAGTTCTGATGATTCAGA
AGTGAAAAGTAATACCAACCCTATCCAGCAACTGAGACTCACTCATAAAT
TGGTTGACGCGTTAAAAACTTTCCAAAGGTTCGCTTATTTGGAGCCAACC
GGTCGTTTGGATAATGCAACCCGAGAAAAGATGGCTGCACCGAGATGCGG
AATGCCTGATGTCATCCCCGCAGAAATTAAAAACCGTATTAAAAAACGAT
TCGCTGCGCAAGGCTCCAAATGGCAAAACAGGGTTCGCTTATTTGGAGCC
AACCGGTCGTTTGGATAATGCAACCCGAGAAAAGATGGCTGCACCGAGAT
GCGGAATGCCTGATGTCATCCCCGCAGAAATTAAAAACCGTATTAAAAAA
CGATTCGCTGCGCAAGGCTCCAAATGGCAAAACAGGGTGGTCACGTGGCA
ACTGGAGAACACAAATAACGACGGATTAACGGTGGCACAAGTTCGTGAAT
ACATGACAAGATCACTCAAAAAGTGGTCTGACGCTGCAAACATCGACTTC
AGAGAAATCCCTCCGACTCCAGCAGGCCCGCAAGCACCGGCCTCTCAGAT
CCGAGTACAGTTTGGTCAAGGGAACCATGGTGATCAGTTTCCTTTCGATG
GGCCTTCAGGGACACTGGCTCATGCTTTCTTCCCTCTCAGCAATGTTGGT
GGTCACGTGGCAACTGGAGAACACAAATAACGACGGATTAACGGTGGCAC
AAGTTCGTGAATACATGACAAGATCACTCAAAAAGTGGTCTGACGCTGCA
AACATCGACTTCAGAGAAATCCCTCCGACTCCAGCAGGCCCGCAAGCACC
GGCCTCTCAGATCCGAGTACAGTTTGGTCAAGGGAACCATGGTGATCAGT
TTCCTTTCGATGGGCCTTCAGGGACACTGGCTCATGCTTTCTTCCCTCTC
AGCAATGTTGGTTTATCAGGGGACATCCACTTCGATGATGCTGAGCGTTA
CACCATCCTTGATCCACCACGTAGTAGTGGCCTCATCAAATTCTACTGGG
TAGCGGTGCACGAGTTGGGACATTCCCTCGGGTTATCACACTCTGAGTTG
TTTGGTGCGATCATGTATCCTTTTTACACGCACTTCCCTGGATTGGAATT
CAACCTGACGCAAGATGATATTCTCGGCATACAATCCATTTATGGTTTAT
CAGGGGACATCCACTTCGATGATGCTGAGCGTTACACCATCCTTGATCCA
CCACGTAGTAGTGGCCTCATCAAATTCTACTGGGTAGCGGTGCACGAGTT
GGGACATTCCCTCGGGTTATCACACTCTGAGTTGTTTGGTGCGATCATGT
ATCCTTTTTACACGCACTTCCCTGGATTGGAATTCAACCTGACGCAAGAT
GATATTCTCGGCATACAATCCATTTATGGTGCAAGAACAGCCACCAGTAG
CTCCTCGACCACCACAACAACCACAACGACAACGACAGAAAAAGAAGCCA
CTGCACGCCCAACACAACAAACGCCCTCCCCTCAAACACAAGGTGCAAGA
ACAGCCACCAGTAGCTCCTCGACCACCACAACAACCACAACGACAACGAC
AGAAAAAGAAGCCACTGCACGCCCAACACAACAAACGCCCTCCCCTCAAA
CACAAGCTACTACAACGACCACCACCACCACCACAACAACAACGACCACT
CAAGCCCCAACGACATGCATCAAAAGAGCAACTGCAATCACTCTCTATAA
CGGCGTGGACCCTTTCATTTTCAACGACCGTTTGTTGTACATCAGTAATT
CAACAGGGTACGTGCGCCCACAGTTTGACGGATCATTCACAAAGAAAGTG
GACGCCGTTCACGGGAAAGTCGGGAACGCAAATCACGTGGTCTTCATGCA
CGACACGACCTACTACAACGACCACCACCACCACCACAACAACAACGACC
ACTCAAGCCCCAACGACATGCATCAAAAGAGCAACTGCAATCACTCTCTA
TAACGGCGTGGACCCTTTCATTTTCAACGACCGTTTGTTGTACATCAGTA
ATTCAACAGGGTACGTGCGCCCACAGTTTGACGGATCATTCACAAAGAAA
GTGGACGCCGTTCACGGGAAAGTCGGGAACGCAAATCACGTGGTCTTCAT
GCACGACACGACATTCACTGTATACGACCGGCGTACAAACGGGATCGTTT
ATCCGGAACGAAAGATTTCCGATGGTTATCAGGGTTTACCAGACGGTTTT
GAGATTCCAGACACAGCTTTCATTTACCCTAGCAACAATAAATTGTATAT
GTTTAAAGATTCACTGTATACGACCGGCGTACAAACGGGATCGTTTATCC
GGAACGAAAGATTTCCGATGGTTATCAGGGTTTACCAGACGGTTTTGAGA
TTCCAGACACAGCTTTCATTTACCCTAGCAACAATAAATTGTATATGTTT
AAAGGAGACAAATATTGGAGGTTCACCGAGAACAAAGCTTTAGACTACGA
GCTTGATTTCGACTATCCGAAGAAAATACACATCCACTGGCCAGGTGTTC
CTGATGACCTGGATGCTGCTTTCGTTTACACCAATAAAGACATCTACTTC
CTGAAAGGAGACAAATATTGGAGGTTCACCGAGAACAAAGCTTTAGACTA
CGAGCTTGATTTCGACTATCCGAAGAAAATACACATCCACTGGCCAGGTG
TTCCTGATGACCTGGATGCTGCTTTCGTTTACACCAATAAAGACATCTAC
TTCCTGAAAGGAGAAGAGTACTATCGATTCGATACGAAACGGATTGAAAC
TCGATCTGGTTATCCTCGCCAAAACGAACTTGGCTTCTTAAGATGTGAAA
CGTCGATTCAAAACGCGAACGCTGTGCTACAAAACCTAAATTTCTATTCG
TCGGCATTTCTCACAAAAAGTAACATTTTATTTTTAATCTTTGCACTTTT
TGTTCCTTATCTCTTGTAAGAGAAGAGTACTATCGATTCGATACGAAACG
GATTGAAACTCGATCTGGTTATCCTCGCCAAAACGAACTTGGCTTCTTAA
GATGTGAAACGTCGATTCAAAACGCGAACGCTGTGCTACAAAACCTAAAT
TTCTATTCGTCGGCATTTCTCACAAAAAGTAACATTTTATTTTTAATCTT
TGCACTTTTTGTTCCTTATCTCTTGTAA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_042738	XLOC_042738-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000108_pilon	genome	sc0000108_pilon:1094378..1099908 -

Properties


Property Name	Value
Aaloc	1558-1764:208
Aaloc	1405-1554:613
Aaloc	1258-1401:1001
Aaloc	1006-1254:1629
Aaloc	892-1002:1882
Aaloc	658-888:2616
Aaloc	394-654:3480
Aaloc	241-393:4027
Aaloc	118-237:5102
Aaloc	1-117:5532

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XLOC_042738 (mRNA) -