|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000034_pilon:1546410..1553133+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_042667 ID=XLOC_042667|Name=XLOC_042667|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6724bp|location=Sequence derived from alignment at sc0000034_pilon:1546410..1553133+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAAATTGATAGAAACACAGATTTCTTAGAATTATCAACGAAAAACGT
TACGGCAGACGAGGACCCAGAGAGCggcgccattttgaaaaaggcGTCAT
TTATGGACCTAGAAAATTCATCACCCATTAATACAAACAACGGTGAACCA
CCACACAAGAAAGGGCGGAACAACATCCTAAATAACAACGAGGTTTTAAC
GCCCGTTGAAACCACCCAACACGCCCCAAATTACCGTGTTgacatgaaat
tgaaaagtcCGAGCCCGACTGAGGATGATTATATAAAATCAGATAAAGTG
CACACGCATCACGGTCGTGTTACGCACTATTATCGCGATGAACCGAAACA
TGACATGCTTCTCGCTGTCAAGGTAACTGCAACggcaaaattcattcaaa
atacACCTATTGACATTTTTGCTTAAAAGCTTCGTGAATTTAGGGTTGGG
TTCGAGTTTGCCATGCTCGATTGTCGTCAGATGCTTGAATATCTGCATTA
ACATTCTCGCAGATACTAATATTTGACTGTCATCTAAACCTCGTAAACCC
GATTAACGATCCCTTGTTCTCGAAGTACTGCAggtttatttgaaagaaaa
ttccgGCGAACGATCTTCTAAAAGTCCCTAACTTATTCTAGacgtttatc
tttttttctcgtACGGTAACACATAGTTTGGTTTTTACTCGCTAGTAGCA
AACCCTGTGCGACAAGTTACACTTTTCTGTAACCCGAAATTGTCTGCTTC
ATATtgattttaataatttattttttttattcagccTTATAAGGAGATGG
TGACAACGGACCAATCAAGATCGAATTCACCGGCCCATCATCATAGATCG
ATGTATGTATTATTAAGCATCTGACTTGGAAAGTTACCCTCGGGctttgt
tttttaagattttgccttcctttaccctttagcttttttGACTGTGCTAA
ATTTCCaccaaaactttcatttttctcatcTCACGTTCAATTACTTAATC
TTACCATTGCATaacaaccccgggggggggtgcttaggcaaatggagggc
acggtatgtgccgcccttaagggtaccttttttggacttccaaagtcccg
ctaagggtcggaaaaatcaggaaatctaatttcagtcccactaagggtcg
gaaaattggagaatttcaactttttaccccctgaaagatcaaaatttggt
caaatttggtcaaattaatcccgctaagggtcgtgaaattcccaaaattt
tcctttgttttctcctttttagtcccggtaagggtctaAAGttcgaaagt
cagctcgcaaccctagtaccccccgggataACAACTCTCTTTGTACTGGT
TAGAACAAGCATATCATGTCAATGTcgatatattttttatgatggtGTGT
AGGTGTAACTTCTTTACCCCTGCGTGAGCCTTTTGATGTTTACTGATAGC
GACATATAATTTTCTCTGGTGTCCATGAGTAACATGGAGTCTAGGAtaaa
gggacaagctggagtttttacaagctctttcttgatttggttggtcgtta
gcctgtaataaaacaattttgttactttttctaaagaacgagTCATCTCT
ATTAtcttaaatgaccaattagtgaagtacaAAAActatatcttataaaa
actccagaacaTCTCAGGATaaacggggacgaggttgtgtTTAGGTAGCA
GGTAGaccctttctacaaaaaaaaacaggcaaATAACTGATTCTTCTATT
GGTTTATTTTAGTGGCGAGAGGCGTGGTGAAAAAAGAATGGATGAGCACG
CCAGTAAGTTACATTCCATACAAGTACTTGGTTCTTGCTATTGCACGCCA
ATTATCTATACAAAACCTAGAGataacaaaagtaaaaaagtgaATACTTT
GTATAATTTACTAACTCCCACTCTCAGAGTAAGACCTATAGATGCTTATT
GTCCATGTAAAgtgtattttttctattttatactaccgttgacgctctct
tattcgacgttgtactattcgataggctcccttattcgatgaaatttaaa
ttcTCCGTCaataagaaactctcataaacgacgttctactattcgataag
ctcccttattcgatgaaaatccgattccccttgaagatcgaattagagag
cgtcaactgtatatcctaacttattttcacttttctagTCATTACGCGCT
TGTTTGCCGATGGTCGTTGTCTATGGCCTTCTTGTAATACCTCGTGTATG
GATAAACACGATTTTGTAAGGTAAGCAAATCTAAAGAACGATAACAATTA
ttaatgaaagttttttgtttccttttctaTGAATTAGGAATTGTATCATC
TTTTATCATATTAACACTATATTTTTCTGGATACTCATCTAACACAATCA
AATTCCATAGGGTAATCACtttttttGTCATGTTTTCGCCTTTAATTTTG
AATGAGATTCTATTTGGTAACTTAAAAAATGGTTACTAACGATTGAGTTA
ATCGAAATTCAGTACTCATCCACACCTGAAAATTGCAGTTGTTATTATCC
ATTGGAACttgatttttaccaaattttcccATGTTGACAGTCGTTACATG
GAATTAAACGAAATAAAGAGATTTTTACAACCGATGAACGTTTTCCTTTA
CGATTTAGACACTTAGATACAACCCATGCAATGGACGAAAAAGCAGCAGC
TCAGGCTAGAGTTCAGAAATATGCCGTCGAAGAGTTGGAGGAAAGGGTAA
GATGTTTTTAGTTTATCATCTTAGTATCTTAGACCATAAAAGGTTTCATG
TTTACAACTTTTTGTCTTATGCTTAACTTGAAACTTCATTCAATTGGAGA
TGTTTTCTCCAATTGAGTATGTATTGATTGCTTTTACTTTCCAAAAGAGG
ACTCAGGGTAATGTAGAATAGATTTTATAAAGGCTTTTTTCATTCTTCCT
TTTTAGTTATCATATGAACGTTCAAGGCTGTCAGCCATGTTGGCACATTT
GGAATACGCTTCTGATAAAGGGTACGTTCTGCACAAGTCGGCTCATTCGG
CTTCTCCACCACCTCGATCAGGATCCGGACACCATCACCCAGTCAGTAAC
GGAGGTGTGGTCTACCTACCCTACCCGCCACCGCCACACCATATCCACGC
CATCCCCACCCACGTACCCGATGATCGTGTCAGTTCACCTCATCACCGTG
AAAGAGAAAGAGAGCGTGAGAGAGAACCACGATCTCCACCTCAATCGAAC
TCGCCACGAAAACATTCTCACCATAAACCAGCCCCTGGCGGTCATTACCA
CTTACCGGCTCCACACTATTACCCAGTCCATCCAGCTTATCCAATCGGAC
GGCCCGTAGCTTTAAAACGCGAATCGCCTGGAGACGAAAAAAGCCCTAAA
GATGAGAGATACCCACCGCCCGGATTGATTGCCGCCCACCCAGAGGAATT
AATACATCGACCAGCTATTGAGGCATCAGCACACCCACCAGGTCCACCAT
TGACGCCCAAACAAGAAGGCGGATACCACCCTGTAAGGCGTCGTGGTGAG
GCGGCAGCTATGGTTGACATTGGGCATGGTAAGGAAGACATAGGTTATCG
TGAGTTGACGTTCTTCTCTTCTAATTTTTAACTCAGACCCCtttttttAG
AAGTTTCGTAAAATgaggtttttcaaattttttatataaaacgattctca
agtttaaattttttttacaaagtcaCAGTGACTCTATTTCGAGTTTTGTA
TTCTATTTGCAAGTTCGATTTTAATTAGTCTCGTTATGCCGTAACATTTC
AGTATCATTTAGAATTATGACCCTCTTCAATTCGTTCAAATACTAAAGAT
TAACTTTTTCCCCCTTTTTTCACTATCCAGAACTTCGCACAAAGGGTAAT
CTATACCAAGACCCAAACATCAGGCCACCTTACACGTATGCCTCACTTAT
TCGACAAGGTGTTTTAGACTCACCTAATGGAGAATTGACTTTAAACGAAA
TTTACAACTGGTTTATCAAAAACTTCGCTTTCTTCAGAAAGAACACTAGC
ACTTGGAAGGTTGGTTTGAGTATTCATTTTTACGGTACAGGGAAGGAGGA
ACTATCTTTTAAGGTTCAGAGATAAAATTTGCATGCTAAGAAATGGAGAA
AATCTACAGTAGCCTCTCGCGTATTCgaactcctataattcgaatccTTC
TACCATTCAAACTAATTCTCAGCTCCCACCAAGGGAAACCCTCATAAACA
CTTTCTCTAGTTAGTGAATCTCTCTGTAATCTGAACAAAGAATTAATTGG
GCTCTTAACTGTAAGATTTTTCATGGTATCATATATTTGACCGTattata
aaaattctattgtataGAATGCCGTTCGACACAACTTATCGCTACACAAA
TGTTTTGTTCGAAAAGAAAATCACAAAGGAGCTGTATGGACGGTCGATGA
TGTTGAATTCTTCAGGAGAAGAATGACAAAACCAGGACTGTAAGTTCAAT
TTGAAATCAATAACGAACCAGGGGGTTCAGGGTTTCTTTTTAAACTTGTC
ACGTTTGTCCAAAAATTGTTTAAGGAAGGGAAGCTTGTTTGTAAGCCGAT
TCACCACCAAAGAcaacttaaaataatttttcaaaattcattctGATTCA
GACCACGAAGAGAATATTACGCGCCCGAAGAACGCCCCAATTCTCCACCC
GAAAGTGGTGGTGAATATGTGACGGATCTTCCATCTATGGCCATGTCAAG
AAAGGAAGATTCAGAAGAAGATAATTCACCGCCACCTCCGCCCACGCAAC
AACATCACGCTCACGAAGAAAACGGTGAACAGTAAGTACAACCTGTAATT
TGTCACACGCTTTTGCATTAGAAGTTTGCGAAACTTGAGCCTTTTGAGTT
CACAATTTTTTCGATCTTACTTTCCAACCAGTTCTACAATTGTTTGCAAT
GGTTTATGCCTAGTCCTTTAGTATTCTTGAAACTTGACAGATCAAAATCT
TGACAGGGGTCTATGAAATTAGCTCGTTTtatagattttatttcaaacat
tCCGTCTTCGATAATGCTATTTATACCCATAATGCATCGTATAGAGAAAA
TAAGAACTGCAGTGGATTGTAGATTTCGTTTCAATAATACATCACAGAAT
TTACTAGATTAAAGCACGTGTTGAAATGATTGTTTCTCGTTTTTGTTTAC
AGAGAAAATTCGATGGCAATCAAAGAAGAACGAGAAGAATACCTCCAGCA
TGCGTAAGTCTACTTTGACCTTCCTTTTTATATATCAgaaatccaccatt
atggattAAAGCAACCGATTCGAAGAGATGATTGGTTAAGCGAATCGAAT
GTCTTCCATAATAGTGGGGGTTAAGGGTTAGGGTTTACTGAAAaccacta
cacgtttttttttttattagaacctagtttacaagaacatataggctgaa
attcgtcgaaaaattaagaacatcttaagaacatgcccagcctccgtttg
gaaaaaaatgacaagaaactacaatttcttcctctttttaagcagttttt
aaccgaatttaggggtggatcttcaaaagtcgagtgTCAAATATTGTcta
aattttgctaaatttaagtgctctttattttgtatcatattgtcgattta
cagtagtctgaaaaattaataacgcatttaagaacattttaggctgaaaa
ttgctaaaaaaataagcacatcagAGCTCGAACCGGTGATGGATTCCGGT
CAAAGACAATCCTATTATTAAGAATTTTCTGTAGACTGGTTGCTGTAGAA
ATCTTTTCAATAATACTGTGTAATTATAGATTCTGAGCGGGACTACTTCC
TGAAAATCAACATTTTGagagcagtggcgttgtgggaaaatttttctgga
ggggccaaagtcaattttttttaaatggcgcccccccccctccaattttt
caaagtggtgTCCCCACCCatcattttctaaacttttaccaaattcattt
gcctaggcataatgaggaaggaaatatttagtggagaaaagtagatttat
ctttgatgaatggaaaagggaaaaacaggccccaccatggttggggccga
ctagaaaatatttttaaatcaactgccaagataccctaaatcactaaata
aaaatagacaaattttacacttgctagagtgaaatgaaacttaaagaaac
aatgtgttatgcgagcgaagcgagcgaaaaaatagatgttttatgatttc
aatattgttgtcagcagaTTGGTCTTGGGACGCAGTTAGCTTtacattta
ataatgctatattgtacacaaaaaaaacttgtaaattagctagatatcaa
aaaagttaccacttaactgtattgcgagcgaagcgagcgaaaaaaattgc
aattatatttaaaaattatctcagtaaaattggtcctgggcgcaatttaa
ggcgcataaagtatgatttttaagattggggcgtttaaaaaaatctcttt
tggcgccccttgctcttcggcgccccttcaaaaaagctccgctggggggg
ccatggcccccccggccccccctgccacaacgccactgtttGAGAGGTAT
TAATCTCGGGATATTTCCCAGATTTCAGGATTTTTCCTCTTTGTAACCCT
CAGAGGGCGACTGAAATTAATActattattcttttttttttctttacaga
gATACAGTGATGGTGACATCTTGA Coding sequence (CDS) from alignment at sc0000034_pilon:1546410..1553133+ >XLOC_042667 ID=XLOC_042667|Name=XLOC_042667|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3702bp|location=Sequence derived from alignment at sc0000034_pilon:1546410..1553133+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAAATTGATAGAAACACAGATTTCTTAGAATTATCAACGAAAAACGT
TACGGCAGACGAGGACCCAGAGAGCggcgccattttgaaaaaggcGTCAT
TTATGGACCTAGAAAATTCATCACCCATTAATACAAACAACGGTGAACCA
CCACACAAGAAAGGGCGGAACAACATCCTAAATAACAACGAGGTTTTAAC
GCCCGTTGAAACCACCCAACACGCCCCAAATTACCGTGTTgacatgaaat
tgaaaagtcCGAGCCCGACTGAGGATGATTATATAAAATCAGATAAAGTG
CACACGCATCACGGTCGTGTTACGCACTATTATCGCGATGAACCGAAACA
TGACATGCTTCTCGCTGTCAAGATGAAAATTGATAGAAACACAGATTTCT
TAGAATTATCAACGAAAAACGTTACGGCAGACGAGGACCCAGAGAGCggc
gccattttgaaaaaggcGTCATTTATGGACCTAGAAAATTCATCACCCAT
TAATACAAACAACGGTGAACCACCACACAAGAAAGGGCGGAACAACATCC
TAAATAACAACGAGGTTTTAACGCCCGTTGAAACCACCCAACACGCCCCA
AATTACCGTGTTgacatgaaattgaaaagtcCGAGCCCGACTGAGGATGA
TTATATAAAATCAGATAAAGTGCACACGCATCACGGTCGTGTTACGCACT
ATTATCGCGATGAACCGAAACATGACATGCTTCTCGCTGTCAAGccTTAT
AAGGAGATGGTGACAACGGACCAATCAAGATCGAATTCACCGGCCCATCA
TCATAGATCGATccTTATAAGGAGATGGTGACAACGGACCAATCAAGATC
GAATTCACCGGCCCATCATCATAGATCGATTGGCGAGAGGCGTGGTGAAA
AAAGAATGGATGAGCACGCCATGGCGAGAGGCGTGGTGAAAAAAGAATGG
ATGAGCACGCCATCATTACGCGCTTGTTTGCCGATGGTCGTTGTCTATGG
CCTTCTTGTAATACCTCGTGTATGGATAAACACGATTTTGTAAGTCATTA
CGCGCTTGTTTGCCGATGGTCGTTGTCTATGGCCTTCTTGTAATACCTCG
TGTATGGATAAACACGATTTTGTAAGACACTTAGATACAACCCATGCAAT
GGACGAAAAAGCAGCAGCTCAGGCTAGAGTTCAGAAATATGCCGTCGAAG
AGTTGGAGGAAAGGACACTTAGATACAACCCATGCAATGGACGAAAAAGC
AGCAGCTCAGGCTAGAGTTCAGAAATATGCCGTCGAAGAGTTGGAGGAAA
GGTTATCATATGAACGTTCAAGGCTGTCAGCCATGTTGGCACATTTGGAA
TACGCTTCTGATAAAGGGTACGTTCTGCACAAGTCGGCTCATTCGGCTTC
TCCACCACCTCGATCAGGATCCGGACACCATCACCCAGTCAGTAACGGAG
GTGTGGTCTACCTACCCTACCCGCCACCGCCACACCATATCCACGCCATC
CCCACCCACGTACCCGATGATCGTGTCAGTTCACCTCATCACCGTGAAAG
AGAAAGAGAGCGTGAGAGAGAACCACGATCTCCACCTCAATCGAACTCGC
CACGAAAACATTCTCACCATAAACCAGCCCCTGGCGGTCATTACCACTTA
CCGGCTCCACACTATTACCCAGTCCATCCAGCTTATCCAATCGGACGGCC
CGTAGCTTTAAAACGCGAATCGCCTGGAGACGAAAAAAGCCCTAAAGATG
AGAGATACCCACCGCCCGGATTGATTGCCGCCCACCCAGAGGAATTAATA
CATCGACCAGCTATTGAGGCATCAGCACACCCACCAGGTCCACCATTGAC
GCCCAAACAAGAAGGCGGATACCACCCTGTAAGGCGTCGTGGTGAGGCGG
CAGCTATGGTTGACATTGGGCATGGTAAGGAAGACATAGGTTATCTTATC
ATATGAACGTTCAAGGCTGTCAGCCATGTTGGCACATTTGGAATACGCTT
CTGATAAAGGGTACGTTCTGCACAAGTCGGCTCATTCGGCTTCTCCACCA
CCTCGATCAGGATCCGGACACCATCACCCAGTCAGTAACGGAGGTGTGGT
CTACCTACCCTACCCGCCACCGCCACACCATATCCACGCCATCCCCACCC
ACGTACCCGATGATCGTGTCAGTTCACCTCATCACCGTGAAAGAGAAAGA
GAGCGTGAGAGAGAACCACGATCTCCACCTCAATCGAACTCGCCACGAAA
ACATTCTCACCATAAACCAGCCCCTGGCGGTCATTACCACTTACCGGCTC
CACACTATTACCCAGTCCATCCAGCTTATCCAATCGGACGGCCCGTAGCT
TTAAAACGCGAATCGCCTGGAGACGAAAAAAGCCCTAAAGATGAGAGATA
CCCACCGCCCGGATTGATTGCCGCCCACCCAGAGGAATTAATACATCGAC
CAGCTATTGAGGCATCAGCACACCCACCAGGTCCACCATTGACGCCCAAA
CAAGAAGGCGGATACCACCCTGTAAGGCGTCGTGGTGAGGCGGCAGCTAT
GGTTGACATTGGGCATGGTAAGGAAGACATAGGTTATCAACTTCGCACAA
AGGGTAATCTATACCAAGACCCAAACATCAGGCCACCTTACACGTATGCC
TCACTTATTCGACAAGGTGTTTTAGACTCACCTAATGGAGAATTGACTTT
AAACGAAATTTACAACTGGTTTATCAAAAACTTCGCTTTCTTCAGAAAGA
ACACTAGCACTTGGAAGAACTTCGCACAAAGGGTAATCTATACCAAGACC
CAAACATCAGGCCACCTTACACGTATGCCTCACTTATTCGACAAGGTGTT
TTAGACTCACCTAATGGAGAATTGACTTTAAACGAAATTTACAACTGGTT
TATCAAAAACTTCGCTTTCTTCAGAAAGAACACTAGCACTTGGAAGAATG
CCGTTCGACACAACTTATCGCTACACAAATGTTTTGTTCGAAAAGAAAAT
CACAAAGGAGCTGTATGGACGGTCGATGATGTTGAATTCTTCAGGAGAAG
AATGACAAAACCAGGACTAATGCCGTTCGACACAACTTATCGCTACACAA
ATGTTTTGTTCGAAAAGAAAATCACAAAGGAGCTGTATGGACGGTCGATG
ATGTTGAATTCTTCAGGAGAAGAATGACAAAACCAGGACTACCACGAAGA
GAATATTACGCGCCCGAAGAACGCCCCAATTCTCCACCCGAAAGTGGTGG
TGAATATGTGACGGATCTTCCATCTATGGCCATGTCAAGAAAGGAAGATT
CAGAAGAAGATAATTCACCGCCACCTCCGCCCACGCAACAACATCACGCT
CACGAAGAAAACGGTGAACAACCACGAAGAGAATATTACGCGCCCGAAGA
ACGCCCCAATTCTCCACCCGAAAGTGGTGGTGAATATGTGACGGATCTTC
CATCTATGGCCATGTCAAGAAAGGAAGATTCAGAAGAAGATAATTCACCG
CCACCTCCGCCCACGCAACAACATCACGCTCACGAAGAAAACGGTGAACA
AGAAAATTCGATGGCAATCAAAGAAGAACGAGAAGAATACCTCCAGCATG
CAGAAAATTCGATGGCAATCAAAGAAGAACGAGAAGAATACCTCCAGCAT
GCagATACAGTGATGGTGACATCTTGAagATACAGTGATGGTGACATCTT
GA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000034_pilon | genome | sc0000034_pilon:1546410..1553133 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1828-1851:6701 |
| Aaloc | 1777-1824:5204 |
| Aaloc | 1597-1773:4653 |
| Aaloc | 1474-1593:4368 |
| Aaloc | 1297-1473:3883 |
| Aaloc | 652-1293:2957 |
| Aaloc | 565-651:2660 |
| Aaloc | 484-561:2191 |
| Aaloc | 442-480:1764 |
| Aaloc | 373-438:785 |
| Aaloc | 1-372:1 |
|
