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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000247_pilon:486192..489442+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_042625 ID=XLOC_042625|Name=XLOC_042625|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3251bp|location=Sequence derived from alignment at sc0000247_pilon:486192..489442+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGATGCTCAGGCATGGTACTAGAACACTGACATCCAATAAAACCAATAT
TCAGAGATTACTACAGCACAAAGACTTTGTTGTTTCAGTATTTGGGACTA
ATTTAACGAAAAGTGAAATTTGGAAGTGTCCTACTAAAGTGTTTGAAGGA
AATGTGTACATAGTATCTCAAGAGAAAGACCAAGATCGGAAACACACTAA
AGCTGCCATCAAAAGAATTTTGCAATCAACAGTAGTTGGTTTTGATACAG
AGACTGCAGTTATATTTCCGAGAAGAACATCAAGCCCACATTTGATAGGA
CTTGTACAAATTGCCactgaaaatgacgtcatcttatGGAGACTTCGCTG
CAAAAAGAAGTATATTTGGAATGAGTTTCCAACGGTTTTGAAAAGAATCC
TCAAAGATAGGGATATAATGAAGGTAGCCATCATTTATTGTTACTTTACA
AAATTTAAATCGTCaggtttacattttttttcataagcattgcacttata
agcatatctaggctcagatatgggaaaaaattaagcatatggcaggCATT
GCTTGAGCCTACAAAAaatcctgattttggctttttttggctggaatttc
acggattttcagtatttccctaaatttatgctttagatttaagcatcccc
tcaagcatttttcagccttattaagcttgtgacctaagcatctctgagcc
tgttttcggatttttgtatgcttataaaaaaaaaaatgtaattcaatttt
ctttctatcCACCCCAAGTTTACGAAGGGATAAGTTTacttaggctacgt
catatcttccttcgtttcgagatTAAAACTTCTACTCTTAGGCCTAAATG
CCTGGATATTTCTAttttgtagactaaattttaGTTGAGACATTAGAGAA
AGGACACCAAGGGctggatttcatttttcaataaaacaacCTTAAACTTG
GTGTTGGTTGGTGTAGATTTGGTAAGAAATTGCACTTTTTATTTCACAGG
TTGGAAATGGAACATATGACGACCTGAAACATCTTTATGAGACGTATAAT
ATCAGTGTTTCTAACATGGTGGATAATCAGACCATTGCAAAAGATATAGG
TAATTACTGGTCTTCTGCTTAAAGGGATTGAAAAGGAAATCTGAGAGGAC
TTAGGGGAATTCAAACTTTTTCTTGCGCCTTGACCtatatcttttttata
aaaacatccaaaaatgttATTACCTAATAATGTTCTTCAAaatatattct
tattttcaaatttcaccgttttgtgagtatttttgtgctatttCCTAACA
AATTGGGTATCAGAATTGTGCAAGCCTTAAAAGTTTGTTCTCTAGGTATT
CCTAATATTTTTGCCATAGAAgcattagaaatatttttataattacgACG
ATTTAACAATAAAGCAAGATCGGTTTAGAGAGGACCTGAACGGACCTGAA
ACCGTTTTCTGTATAAtgataacaataacaataataatagtTTGTACTTA
ACAAAAAGCGTGTTGGCGTTGTTGTAGCAGGTTGTAGGATGTTGTTTCTA
AACTAATAAAAGTGtgagaaaagctgtttttctttCCGAAGCCAAGCTCC
TAACGACGTAATGTTAATGAAGTAATACTCAACACGAATAATTGTTTATT
TTAGGATATAATAAAATTGGTTTAGTGGCATTAGCAGCTCAACTTTATGG
TtggaaaatcaataaaaaagaaCAGCTTTCCAATTGGGAGGTACCGGAAT
TATCAGAATCGCAAATACAATATGCATCGACCGACGCCTGGGTTTCCTTG
AAAATATATCAAGAACTTTCAAAGTAAGACTAATAACACAACCCATAGTT
TTAACCTTTTCATCTAAAGTAATAATATCAAAGTTTGCAATTCCACGTCA
ATCGTGCATTAAGAGAACTTGGTATTTTGACGGGCAGCAAAATTAAAAGT
CTTTTATTTAGTGGAATTGgctaaaattagttctcttATCAAGCCAGATC
AAGCTAGTACAAGTCATGTCCCTTCTCGGCCAATTATAATGGAACTCTTT
TAGAAAGTTACTTTGATTTTCTGCAAATTTTATAACCTTTTAAAAGCACT
CTAAATAATTTACGCATTCTAATATTTTAGAATGTCAAAAACGCTACAAG
GAAACCCAATCCGAGGGACATCAAGTTTTGATCACATCTTGCGTCAAGAA
GCCAAATTCGATGCTGACTTTCTCCTGTCCTTAGATTTGTTCGGTGAAAA
AATGGTGAGAGGtttttttCTAATCAGGTTCTAGgacaacatttttttgt
ttacgaaCGCGAAATTTCAGATGGCCCTAGATTTTAGTACCAAAACCTTC
AATCGGTGACGAAATACTTgacacaaaagggaaattcaccggggtgtttt
gaaaccacaatcgatttgtaagtgctctaaagtaggttccaagggtagag
ttttaactctgatttttaacgctagacttaagacagGACCTTAAAAAATG
GttcagtagggcttgaaatatagcctagaaaccaataaatccttCCCAGA
TCGTTGAAAtgaagttgaaggcccgaaattgacattctcgctcgaacttc
aattttcgaaaaatggtaaattaaccaaaagtgccaatatgttatggaaC
TGATTGTAGTAGCTGATGATTTGATTTAACTGAGATTATTCACATTCGAC
CCTTCCGTTCAAAAACGACGAAAAGATTTACACAAGTTGAGCAAGTGCGG
TTCATGTGTTCGTCAGTTTTGTTCACAAACGCGAAGTTTAAAAGGCAACC
CTAAAACTTTTCTTGGATTTCGAAAAACTCACGAAACTCGCGAAGTATAA
TCCTCGCGGAAATTAATGCCCTTAAGGATTCGCGAATCCGTGTTTAAAAG
AATTCTTGTGATTAATAGTGAAATTTCTAGACCTCAGTATTTCTTTGACA
CGTGGAGTTGACTTTTACCTACACCGTGTTACTGTGGCAGAGGTCTTACG
AGATTCCTGTGCTTCATTCAACTTCCTTCAAtttacaaaagattttatta
atcTTTCAACTTAATTTTCAGTCAACGAAGAAAGGCGATTTGAACGAAAG
TGTGCTTAAAAGACAAAGACCGAGGCTAAGCTTCGATGCTTCAGACTACG
ACCTTTCTGAATCTCTTTCTTCGAATGAAACGAAATTGAATTCGAAAATC
AACGAGGTGGTGAAAAGGGAGGATATACCGTTCGTTTATCAAGCTGTATG
A Coding sequence (CDS) from alignment at sc0000247_pilon:486192..489442+ >XLOC_042625 ID=XLOC_042625|Name=XLOC_042625|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1992bp|location=Sequence derived from alignment at sc0000247_pilon:486192..489442+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGATGCTCAGGCATGGTACTAGAACACTGACATCCAATAAAACCAATAT
TCAGAGATTACTACAGCACAAAGACTTTGTTGTTTCAGTATTTGGGACTA
ATTTAACGAAAAGTGAAATTTGGAAGTGTCCTACTAAAGTGTTTGAAGGA
AATGTGTACATAGTATCTCAAGAGAAAGACCAAGATCGGAAACACACTAA
AGCTGCCATCAAAAGAATTTTGCAATCAACAGTAGTTGGTTTTGATACAG
AGACTGCAGTTATATTTCCGAGAAGAACATCAAGCCCACATTTGATAGGA
CTTGTACAAATTGCCactgaaaatgacgtcatcttatGGAGACTTCGCTG
CAAAAAGAAGTATATTTGGAATGAGTTTCCAACGGTTTTGAAAAGAATCC
TCAAAGATAGGGATATAATGAAGATGATGCTCAGGCATGGTACTAGAACA
CTGACATCCAATAAAACCAATATTCAGAGATTACTACAGCACAAAGACTT
TGTTGTTTCAGTATTTGGGACTAATTTAACGAAAAGTGAAATTTGGAAGT
GTCCTACTAAAGTGTTTGAAGGAAATGTGTACATAGTATCTCAAGAGAAA
GACCAAGATCGGAAACACACTAAAGCTGCCATCAAAAGAATTTTGCAATC
AACAGTAGTTGGTTTTGATACAGAGACTGCAGTTATATTTCCGAGAAGAA
CATCAAGCCCACATTTGATAGGACTTGTACAAATTGCCactgaaaatgac
gtcatcttatGGAGACTTCGCTGCAAAAAGAAGTATATTTGGAATGAGTT
TCCAACGGTTTTGAAAAGAATCCTCAAAGATAGGGATATAATGAAGGTTG
GAAATGGAACATATGACGACCTGAAACATCTTTATGAGACGTATAATATC
AGTGTTTCTAACATGGTGGATAATCAGACCATTGCAAAAGATATAGGTTG
GAAATGGAACATATGACGACCTGAAACATCTTTATGAGACGTATAATATC
AGTGTTTCTAACATGGTGGATAATCAGACCATTGCAAAAGATATAGGATA
TAATAAAATTGGTTTAGTGGCATTAGCAGCTCAACTTTATGGTtggaaaa
tcaataaaaaagaaCAGCTTTCCAATTGGGAGGTACCGGAATTATCAGAA
TCGCAAATACAATATGCATCGACCGACGCCTGGGTTTCCTTGAAAATATA
TCAAGAACTTTCAAAGATATAATAAAATTGGTTTAGTGGCATTAGCAGCT
CAACTTTATGGTtggaaaatcaataaaaaagaaCAGCTTTCCAATTGGGA
GGTACCGGAATTATCAGAATCGCAAATACAATATGCATCGACCGACGCCT
GGGTTTCCTTGAAAATATATCAAGAACTTTCAAAAATGTCAAAAACGCTA
CAAGGAAACCCAATCCGAGGGACATCAAGTTTTGATCACATCTTGCGTCA
AGAAGCCAAATTCGATGCTGACTTTCTCCTGTCCTTAGATTTGTTCGGTG
AAAAAATGAATGTCAAAAACGCTACAAGGAAACCCAATCCGAGGGACATC
AAGTTTTGATCACATCTTGCGTCAAGAAGCCAAATTCGATGCTGACTTTC
TCCTGTCCTTAGATTTGTTCGGTGAAAAAATGTCAACGAAGAAAGGCGAT
TTGAACGAAAGTGTGCTTAAAAGACAAAGACCGAGGCTAAGCTTCGATGC
TTCAGACTACGACCTTTCTGAATCTCTTTCTTCGAATGAAACGAAATTGA
ATTCGAAAATCAACGAGGTGGTGAAAAGGGAGGATATACCGTTCGTTTAT
CAAGCTGTATGATCAACGAAGAAAGGCGATTTGAACGAAAGTGTGCTTAA
AAGACAAAGACCGAGGCTAAGCTTCGATGCTTCAGACTACGACCTTTCTG
AATCTCTTTCTTCGAATGAAACGAAATTGAATTCGAAAATCAACGAGGTG
GTGAAAAGGGAGGATATACCGTTCGTTTATCAAGCTGTATGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000247_pilon | genome | sc0000247_pilon:486192..489442 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 823-1002:3072 |
| Aaloc | 721-822:2153 |
| Aaloc | 694-714:2132 |
| Aaloc | 526-690:1657 |
| Aaloc | 424-522:1000 |
| Aaloc | 1-423:1 |
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