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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000247_pilon:414161..417330- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_042609 ID=XLOC_042609|Name=XLOC_042609|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3170bp|location=Sequence derived from alignment at sc0000247_pilon:414161..417330- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGATTGGCGATCCTACGCAATCTTGTTGTTTTGTTTTTATTTTCTATA
TTTACCGTTAGTTGCAAAGACGCATTTATTACCAGAGGACTTGATCAGTG
ATGACGCTGAGCAGTTAGAAAGAGAAAAAAGAGACGGATTTTTCGAACGC
ATTTTTTCGTTTTTCAATAATAAACATGAAAAAGAAGAGGAAGAACTCGA
AAAAGAAGAAGATGAATCACAAAATGAAAAAGTTCAAGATGTTCTTAAAG
ACGATGACATAACAGCATCCTTCCGTGGTTATTCATTGCCGGAGATCAAT
CTTCCCTTCACCGATTCCTCAACCCGAGAAACTTTATTTACAGATTCAAC
TTGGGAGGCGAAACCTACTTCTTATACGTCAACTCTTCAAAATACAAAGA
TCTTTACAGAATCTACACAAGTCGGCTCGTCTAGTTCAATGAGTTTGCCT
ACTTTGAAATTAAGCACGGCAAAAACACCAAAGACAATCCAAATGTTGAA
CAGTGTTCAAGCTACACCTTATATCGCTTCGTCCACAGAAGTAATGACGC
ACACAAAAATCCCAGAACCTACTTCATCACAATTTATAAGGAGTTCCATC
AAAATTTCCCCAACTCCTTCAAGGACTATTGAGATCTCTACAACTTCAAT
GGCAGAATTGCCGGCTTTTGTAGATATGAACGTTGTTTTAGCCGATGGAC
CTAGGATACCTGATGAACGAGCTTATGGCGATGTTTTTGGTAAGGTTATT
TCACTCTTTACGGCATCTGGGTATTTTCTTCTTAACAACCCTGTCTCCTT
AACCCTGTGAAAATATTTTCGCCCGATACCAATTGTTTTTTACTCGCCCA
ATACCAATTGTTTTTTACTTAGTGTCAAATGACCAGGCCATACTCACTAG
AAAATCTACAAATTAAGTAGATGTATAAATTTTCTTAATTCTTCGGATGT
CCAGTTGGTTCGACTGACAATTCCTGCATTAATAACACGCATGCGTAATT
TGTCGTTCGTTTAGACCACATGTAGTTATTTCCCGTGATAAACAAAGAGA
AATGAATCGCTAGGGGTGGCACAGTCACTTTCGGTCAGGGTTGTAGATGG
CAAAATATGAATTTTGTCGTTCTCTTTTGTCGTTTTTTATGAAATTTGTC
GTTCTTTTTGTCTATTTTTAGTAATGCAGGAATTGTATGATAGAGCCTCT
CGTCTGTAGAATTACGGCACTCTTTAATATCGACATGTAATGTAGAATAT
AGACTAATTTTGTAGATATTCTAGAACGATTTCACTTTATGCGTGCTCGA
GACTCGAGCTCCAAACTCCTGACCCAAGGACTTTTGTAGTGACGAGTAAA
CAGTTTAACTGACGAGTTAGGCTATCTGTCTAAATCGTTGTTTATCCGGT
GTTACGCCATCCACAACCCCGACCGTGTGGCTCCACCTTATTGTATTTTT
CACCCTTACTTGTCAGCGCTAAATTACTCATTGTGGTGTATACAATATAG
ACTCTGTTGTGTAGCAATCTACTATTTTGCCGTAATTCTACAGATGTCTG
TAGAAATATGAAATCTACATATTTTTTAGAATAATAATTCTATCCGTAAA
TCTTAAATTTACACCATCTACGTATTCTGTAGAATTACGTGTGATAATGT
GTTGCAAATGACCATTCTGATGAAAACTAATAAATATCATATAATCCATC
CATTCCTTTATTTCAGCGCAAGCACCCCAAGAAAATACCGTTGAAAAATC
AGCTCAAGCTAAGGTAGGTGATATCCTTTCATCTCCTGTTTAATTCTAGG
AATAAACAGCTCGACTTGCCAGTCAAAGTTTCATATTACCGAGTTTGCAT
TCGAGGTAAAGCGAATGAGACGGTATATAAAGTTGACATGTCCCTAAACT
TGCCGCCCACCTTGCTTGACAATGGTAAAAACACCAAAATACAGTCGTCT
GTTTAGGTGAGCAAAGATATAGAGCCTACATCAACTTATAGACTTTGTTT
TATATCGACTTCACTTACTGGTGCCCTCGATATCCTCCGAAACATTCACT
CACTATTATCTTATTGACTTCACAATCATTATTTTTGGTTTTATTGTCTC
ATCCCTGGATAAACTGTTAGGACAATTTCCGTTGGAGTATTAAATTCCCC
ATGTCTCAGTGGTCCAGTAATAATGTTTCTCGTTCCGATCTGAGACATTT
TCCCGAGGGAATTAAAGAGTCTTTAATCTTCTAGGAAACCTTCCCAGTGA
GTAGGGCCCTAGTCTCACTGAATCTGTAACTAAAGGAACTAAAAATCACC
TGTGAAGCTTTTTATTTTATTTTTAGAGCGTGCAATTTCTGTTCTCAAAT
TTATTGATACCAGTGGTGTCTGGTTTATTTGGTGCGTTTTGCTTCAGTAT
CGCTGTCTTGATCATGAGGTGCATCAAAAGAAGAAACTTGAGAAAAGTTA
ATTACTATGGAGGAAAGGTAAATACTTACTTCTAACAATTTTCCATTGTT
TTGATTTTAGCGGCCGCTCTTTCCGGTAAAAAAACGGTAGGTAAAATTCC
GGTTCTCGTAAGGAAACCTAATAGAGAAATGGTAGGTAAAGAACTCCTTT
TAATCATAACTTCTTTTCCTGATAATGAATTTTTGTGAAATTTTCAGGAG
AGATCCATAAAATTATCATTGATATCATTTTCAAATATCTAAATCATTTT
CTTAAAGGAAATAAAGAAAATGACAATGTTTACATTCCTCTAACCTTCCA
CAGTACTAAAGTGCGCATTTTTACCTACCGTTTTTACGGTGGAACACGGT
GGAGTAGTAAGACTCCTAAACGGTGTATTGAAAGACATCCTAAAAAAAAG
TAAAAGCAAAAGATTGGCAAAAGAAGCTAGGATATCTAGACTAGCAAATG
TTTTTAATTATTTAAAGAAATATGGTTTTTGAATTGAGAGATATCTAAAT
GAAAATATGGGACGAACAAAAAGTGAAATTTTAAGATCTAGAAAATCTCG
GCTGTTAATTTGAGAGTTCTTTTCAGGGTCGAAACCATATCTGGAACTAC
TATAGCTGAAGTAGCTCAACACTAAAATTGTAACTCAATTTTATTTTTCA
GCCAGAGACTCGTTTGTACGGATTAGACCATATGGGGCTGTTATCGGACA
TGAGTTCAGACGAAGAATGA Coding sequence (CDS) from alignment at sc0000247_pilon:414161..417330- >XLOC_042609 ID=XLOC_042609|Name=XLOC_042609|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1992bp|location=Sequence derived from alignment at sc0000247_pilon:414161..417330- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGATTGGCGATCCTACGCAATCTTGTTGTTTTGTTTTTATTTTCTATA
TTTACCGTTAGTTGCAAAGACGCATTTATTACCAGAGGACTTGATCAGTG
ATGACGCTGAGCAGTTAGAAAGAGAAAAAAGAGACGGATTTTTCGAACGC
ATTTTTTCGTTTTTCAATAATAAACATGAAAAAGAAGAGGAAGAACTCGA
AAAAGAAGAAGATGAATCACAAAATGAAAAAGTTCAAGATGTTCTTAAAG
ACGATGACATAACAGCATCCTTCCGTGGTTATTCATTGCCGGAGATCAAT
CTTCCCTTCACCGATTCCTCAACCCGAGAAACTTTATTTACAGATTCAAC
TTGGGAGGCGAAACCTACTTCTTATACGTCAACTCTTCAAAATACAAAGA
TCTTTACAGAATCTACACAAGTCGGCTCGTCTAGTTCAATGAGTTTGCCT
ACTTTGAAATTAAGCACGGCAAAAACACCAAAGACAATCCAAATGTTGAA
CAGTGTTCAAGCTACACCTTATATCGCTTCGTCCACAGAAGTAATGACGC
ACACAAAAATCCCAGAACCTACTTCATCACAATTTATAAGGAGTTCCATC
AAAATTTCCCCAACTCCTTCAAGGACTATTGAGATCTCTACAACTTCAAT
GGCAGAATTGCCGGCTTTTGTAGATATGAACGTTGTTTTAGCCGATGGAC
CTAGGATACCTGATGAACGAGCTTATGGCGATGTTTTTGATGGATTGGCG
ATCCTACGCAATCTTGTTGTTTTGTTTTTATTTTCTATATTTACCGTTAG
TTGCAAAGACGCATTTATTACCAGAGGACTTGATCAGTGATGACGCTGAG
CAGTTAGAAAGAGAAAAAAGAGACGGATTTTTCGAACGCATTTTTTCGTT
TTTCAATAATAAACATGAAAAAGAAGAGGAAGAACTCGAAAAAGAAGAAG
ATGAATCACAAAATGAAAAAGTTCAAGATGTTCTTAAAGACGATGACATA
ACAGCATCCTTCCGTGGTTATTCATTGCCGGAGATCAATCTTCCCTTCAC
CGATTCCTCAACCCGAGAAACTTTATTTACAGATTCAACTTGGGAGGCGA
AACCTACTTCTTATACGTCAACTCTTCAAAATACAAAGATCTTTACAGAA
TCTACACAAGTCGGCTCGTCTAGTTCAATGAGTTTGCCTACTTTGAAATT
AAGCACGGCAAAAACACCAAAGACAATCCAAATGTTGAACAGTGTTCAAG
CTACACCTTATATCGCTTCGTCCACAGAAGTAATGACGCACACAAAAATC
CCAGAACCTACTTCATCACAATTTATAAGGAGTTCCATCAAAATTTCCCC
AACTCCTTCAAGGACTATTGAGATCTCTACAACTTCAATGGCAGAATTGC
CGGCTTTTGTAGATATGAACGTTGTTTTAGCCGATGGACCTAGGATACCT
GATGAACGAGCTTATGGCGATGTTTTTGCGCAAGCACCCCAAGAAAATAC
CGTTGAAAAATCAGCTCAAGCTAAGCGCAAGCACCCCAAGAAAATACCGT
TGAAAAATCAGCTCAAGCTAAGAGCGTGCAATTTCTGTTCTCAAATTTAT
TGATACCAGTGGTGTCTGGTTTATTTGGTGCGTTTTGCTTCAGTATCGCT
GTCTTGATCATGAGGTGCATCAAAAGAAGAAACTTGAGAAAAGTTAATTA
CTATGGAGGAAAGAGCGTGCAATTTCTGTTCTCAAATTTATTGATACCAG
TGGTGTCTGGTTTATTTGGTGCGTTTTGCTTCAGTATCGCTGTCTTGATC
ATGAGGTGCATCAAAAGAAGAAACTTGAGAAAAGTTAATTACTATGGAGG
AAAGCCAGAGACTCGTTTGTACGGATTAGACCATATGGGGCTGTTATCGG
ACATGAGTTCAGACGAAGAATGACCAGAGACTCGTTTGTACGGATTAGAC
CATATGGGGCTGTTATCGGACATGAGTTCAGACGAAGAATGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000247_pilon | genome | sc0000247_pilon:414161..417330 - |
Properties
| Property Name | Value |
|---|
| Aaloc | 928-996:70 |
| Aaloc | 787-927:845 |
| Aaloc | 742-786:1453 |
| Aaloc | 1-738:3171 |
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