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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000200_pilon:266134..273575+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_042604 ID=XLOC_042604|Name=XLOC_042604|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7442bp|location=Sequence derived from alignment at sc0000200_pilon:266134..273575+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGACGCTGACAAAAAAGCACCACCAcctaaagaaatttttgagaatGG
TGGAGAAGAAGGTATTTTACGAACCAGTTCTTTGATATAAAGTGTATTCA
CTTAAAATTCCAGATTATTCCTTATAGTTAGTTTATACAAATTGTCCCTG
TCACCAGATAAATCTTGATGTTTAAGCGTTTTAGGAATCTCTGCAACAGA
AATTCTTATGTGATgtcatgttgttgtttttcttctttcttctactTTCG
TTCTGTAAGTAAACTCTATTCCTTCTTAGATTTCAAATATACTTCCAAGA
AAAAGTCTTTGCATTTAACGACTACAATGGgctcttcaaaaaaaaatttt
acatggggggtggaggatatattgtccggggggggtagcaaaaaatcatc
aaaatttgccttgtccggggtgtaaatttgctccgtccgggggtaatttg
gtgtGTCCGGAGGGTCAGCAGATGCTTTTTCGGGAGGTAAAACCTATttt
ccggggggccaaaagtcaccctgtccggggggtaaatcactaaaaattgt
tatatcctccacccccatgtaaaatttttttctggaagagcccaatttac
ATTTTGCTGAAAAAACTGAAGACACGACTAGCTAGCATCACAAATAAAGC
ACCTTAACTCTTCTTAAAGTCTCTTCTTTAAGAACTTCGTTACATTTTCA
CaatttcttacattttagtGTTCGATGATCCGGATGGcattttgaagaag
aagaagaagagcaagaaTAAAGCGGTTCCTTCTTCACAAACTGTAAGATC
GTCTGCCACAATCAACATTATACGAACTCTCAAGGTTCGTCTGTCTCTGT
CTCGTCGTCCGTACGATGATCGCAATAAACCAGGGGTTTCCGATtcgaga
tgccttggagtttttacaagatacttcactgatttgtcatttaaagtgaa
agagatgacgcgttctttagaaaaagtaataagattcttttattacatct
taacgaccaaccaaatcaaataagagcttgtaaaaactccagctcgtCCC
TTCAATTCAGACCTCTGCTCCTGTGTTCTCTTCAAgaatgcttttttata
agaacaacccaattttttgaagccttatgacgttctaaatttttttagtt
ttaagccaaaaaatgttttaacctcttcttattttcactattttgtgggt
atttttatATGCCATTTCCttagaaatcaggtgttttagagtcagcTACT
TAATCcttagaatattcttaaaattttggccatcgaagccttagttctta
tatactttgttcttataacagAAAACGTGTATACACGTAAACAATCGCCC
TTACTGCCATATACTAAAcattatctttaaaaatttgtccaAATTTGACC
AtcttttataataaattttatCTCTACTCTAAGAGTCGTTTTTAAGTCAT
ATCCAATGCAAAAAGGGCTCAACATTTACATTTTTAATCTAGATAAAAAA
GGAGCAGAAAAATGTCCTGGTTATTATTGACGTCAGCAACATTGTTTACT
TTAGCTTTAAATTCACAAAAACTCAGAGATcagtcttttttgaaaaatgc
tgaTCTAGAAAATACTTTAAAAGTCATCACTTATTAGGCGAATAAACACA
TGATTGTCACTGTGTACTtgaattgacttgaaatttcttGTCCGGAGAAG
TATATGCAAATCATCTGTTTTTacctttaaagttttaaaaattttgcctg
GATGAGTGAAATGCAAAATTAATGTATTTTTTGCAGGTATATTCAATAAC
CATATGATCTTTTGTTAAAGATTGACTTTGTGATTATCAAACTGCCTCAA
AAGTTTAATCCATAAAAGCCTTTGCTTTTATAGCGTCTAGCTAAGGAATT
TAATGTATTTCTTTTTATCTCTTTATGAACAGGATGTTGTGACAAGTGAA
GATGAAAAGGGAATGGCAATGAAGGTAATCTTACCATCTTCTTCTGCTTT
GTGCATCTAAACATTTTCatccaagaaaaaaagaagattttgttttcatt
gaaagtttttcttaaTCTAGGATTGGTTTCTTACTTACTTTCTCACTtat
acactcccttctcacagaaccgATGGGATTTTTCATGACACTGGGAAAAA
TCTCTATAGAGATCGATACTATAAATTCTTTCATGATTTGgcatttgaat
tccattgttttcaagtcagaaataTGTATGGAacaaatagcacaatattt
tgcagtgaggatttgtttatttgattgttttcagcAAGGACAAAAATATT
ATGgtaaatttttccagtgggaagaggTTCCACTGGGCCAGTGAAAAAGG
GGTGtattatacacccctgtctcacagctggTGGAAATTCTTCCAGCATT
GGGGATGGAAATAATACACttcttttcattgaatttcaaatgggggaTGA
AGACAAAGTCGATTTCTTAGTAGGGCTGAAgttttggggtatttttccaA
CGGGcacaaaattttggtcaaatttttctGTGACTGGTTTTCATATCTGA
AGACTTTATTTCTAGAGAGTATTGGAGTTAGAGAAAGAGCTTTTGGACAT
GCGCAGTTCGAAGaatgaaagtgaagaagaagtGAAAGGGTTGAAATATG
AATTGGGTGGTcttcaaaagaatttcaaagagTTAAAAGATTCATCAGCA
GCATCTCTGGAAGAATTGGAAAAAGTAGGTTTGTCTCAGGGGCCTCGGTT
CCACTTTGAATATGATAGGGCCATATATACTGATTAATCAgtaatttttg
catttcagtcCTATTAGTTCGCCTAAAGCACGTCTGTTTTAAGGTTATCa
aacaatagatttttttgttttaaaaaagtgaCTCCTTGCTCCCCTCTTTG
TTATTACAGTTCGAAGTGACGCGACTTTCAGATAAAAACGATGctctaaa
gaaagaaaatactgACCTAATGAAACAAGTGGAGAACTCCATGACGCAAC
AAATTGCAGACCAGAAAGAATGCGAGCTCTTGAAAACTGATCTAAAAAAC
AAAACTGAAGAAATGAAAGTGTTGAAATTACAAGTTGATGAAATCAAAAG
TCAACTTCTCAATTCTATATCCAGTAATAATGAGTCGCTTCAGGTGAGTA
TTTGACTGCAGTGTATCCAGAAAAAACAACCTTTAGAATGCCTGTTTTTA
AAAACTGCTGTATGGCATAATGTCtccattttatgttttttttgtattaa
aactGCAATACTGTTTTCTTCAAATCACATTGAAACTTCTTGACCAATTA
AGTGCCATTGGCAAAGACTGGTATTTGATTAATTAATAGTAGGAAAGATT
CTATAAAATAgcacattttttctttataaacaaccAAGTCCCGAGTCTTC
ATATTAGCCGAACTTCTTTCACTCCCTCgcaaagtaaaagatttttggat
AGTCTTACCATGACAGGCAATGGCCCTTGACCCAAAATATATAATATCAG
GTGTGATGTCAAAGCAATTTCAAAATTAGCTAAAATAATAAGCAGTCCAG
GGCTGACCTAAAGATtgaatttgtttaaaaagaatgTGTACCTCAGATAC
AAATTCTGCTTCGAAACTAGGTCATTGAGgaagcgaagaaagaaatgaaa
gaaatgaccgagagcatgaaacagaaagaagaaaCGCTCAAACAACAAAT
CACTCAACTTGAAAATGATTGCAAAGCAAAAGAAGACAAAATTAACAACG
AAAAAGATTCCCTTCTAAAAGAGGTAGTGGTTGTTTTTATCGTTGCTGCT
GTTCTAgcatggaaatttttcaaacattgattaacgaaattaaaactgat
ttttttaagttatttatttttttgtagatAGGTATGGGTTTTTGGATTGT
AAGTAGTTTCAAGcacattgaaatattttcaagattcAATCACTGAGCCA
ATTATTACGAAACCTATTAAGAAACTGAACCTATTCTGAGGTCTCTTCCA
AAATCTCTTAAAAACTTACCTTATGCATGAAACCTTTGGAGAGATTacgt
tttgacttttttaacccTCAGAGGACTTTGGAAGGTTAAAAAACAACCAT
CATCGTTCGCAAATACCCAgaacccatttttgcctaagtcaCACCCCCAG
GGTTGGTCCCTTCAGAAGACTCTTCAAATATTCTACGTTACCACAATTGG
ATGCACCCCATAAAAATCATGCTTCGCCTCTCTTTCTCCTGTTAATATTG
TGCAGAATTCGGGTACTGGGACAGGGTTGTatgctttgaaatattttttc
taaaccatttagaaatcgaaagtgaaaaaaattcttgtaGAACTGTGCTT
GCCAGGATGACTGTTTTAATATCAAATAATTTCCAATCTTAGAACACtat
tactttgaaaaaattcataaaatatttctttcactCCAAACACATAACTT
TAGTGACTATGAACGGTGATTTTTCAGATTACATTAAGACAAAAATTTAC
ATGAAACACGCTTAGCTAGATACCACAATCCAATACATACACACGCACGC
CCTcctaactttcattttcttcattttcaccaCAGCTAAATGAAGAACga
gagaaagtgaaagtgaataACAGTGAAATCAAAGTGTTAAAGAACGGAAT
CGAAAAATTGATCAAAGAGAAGACTGACGAAAAATCTTTCAGAATCAAAG
TATGTTTTCAAAGAGCTGACAACAAAGAAGTGATAATTCTTGTCATTCGT
GCCTTTTagttgactctcgcttattcgagcACGTtagcgaaaataatttt
ttcgaattgcagagggattcgaattatagaaagtactCAACGAACTTTCT
CTTGGTCAGGACTGCAACTCAGTTCAAATTATAtgaagattcaaataata
gGAAGTTGGGATTGGTGAGGATACGGATACGCTGTGTGTCTGACTTGACA
CGTAAGGGTTTTGAATATTTATGAAACTTTTTCATCTAATGGATGGTGTA
TATATTGAACCAACTTTCTCTGGCCATGACGACTAAAAGACATATCTCAG
AACCATTCCATTTTACTCTTTCTACAGATAGCAGAGCGTTTAAAAATGAT
TATTGAAGAGAAAAATGCTATGGAAGCTGCTTACAAACTCGACCTACAAC
AAGTGTCATGCGATTTTGAAGACCTCAAAAAACACTTCGTTCACGTTACA
AGGTGACTAGCAAGCGGTCTTATTATTTAAAGATTGTATTCACATGCCCG
GCGTGGCGCTTGAAGTAAGGCAGGCAAAACTTAAGGGGGaaatttaaaga
agattttttttcactagTTTGCGGAAATGTGCGGTGGTCATGCCTCCTTC
TCCTCCCTCATCGACGGGACCCACGATTCCAACAAATTATAATAAGTGCA
ACTTAAGCCCTTCTTCAAAGAGGCAGGACTAATTTTTCGTCACCTTCAAT
CTTCTCAAATGTAAATGATTAAACAACAACTCAACATTCGAATGCTAACC
CACGTATTTAGATTAAATTCTACTTCTGCATTTGAGCGACTGGAAATGAT
CCGAACTCattcaaaatcatttcattaaTTACTTAGCGACAAAGcagaaa
tgtttcaaaaattgagCGACGCTGTGTTCGAGAAATGCAAGAAACAACGC
TGGGTACCTGACATTGAATCAGAAAATTGTACAAATTGTTGTGAAAAATT
CTCTTTCACTCTCAGGAGGGTATGTTTCTCAATTGGAAGTTAAGGTGaca
ttatcgaataatagaatatCGAAAAGAAATTTGACTTTGGCTTTTAACTT
GATCAAAAATGAAGCTTTGTCTAACATAACATCAAATGAGAGTGTCATAT
ACATTATCTCCCAGTAGAAGGCTTAGATCTCGTCAATCTCCTTTTAACCA
CTCTTTTTACAACACATTGTTTGTAAAATTGtgtctaaacatttttttcc
agcACCACTGTCGAATGTGTGGTCATATCTTTTGTTTCAAATGCTCCGAT
CGATGGTTGCTTACTCCACACAATAGGTAAGTCGAAAAGTAATGTTTTCT
GACCCCCTACCCTGTCCTCCAGTGGAGTCCCTGATCATGCCATCATGCCa
aaaaaaGTTCTAATCCACAGGATTACGCTGAGAATATTCtttttttCCCG
GCATCACTCTTAAAGTCTCAATCGCATATCACGCTTTTTAAACTCATAAA
CTACGCCATCATGCCaaaaaaaGTTCTAATCCACAGGATTACGCTgagaa
tattatttttttcccgGCATCACTCTTAAAGTCTCAATCGCATATCACGC
TTTTTAAACTCATAAACTACGCCATCGCGCCAAAAGAAATGCCCAAATCA
CATCGCTATGCAAACAACCGGGGTTGGGTTTGAACCTCTTCTGCAATCTA
AGTAAAAAAGTGTGAGTAAATAAAAGGTATTCCTTTTCACCGATGGCTGT
CTATTTgctctttttactttttgtcGATTGCTCCGCGCTACTACAAGGAG
TATGTTGCAAACTTAATCATTTTCTCTCCTGTTTAGCAAGAGAGTTCGTG
CTTGTGATGTCTGTGCGGACACGTACACAGAACAACATTTGGATGCTGAA
CCAGGGCGTGATATAGATATGACTGACGCCCCTCCACAACAAATGTATGT
ATTCTTCATTACTCTGCTACAAACAAGCTTATTATGCCTAGATATAATGA
CATAGGAATAATTAGATGGTTTGATGAAACAAAATGATTTTGGTGTTAAG
AAATTTCATATATTTCAAATTGCTTTACAGTATCTTGATTTACTGATGGG
GAATTTATGAAGGTGAAATTTGTCTAAATTCATAAAGGATTGCTTAAAAA
ATCTCTTAACCTTTCGCCTTTTGGCCTAAAAACCAACTAACTTTCCCCCT
ATCTATTGTGATTGTAGGTATAGAGAATTGACAGGTGAAGAAATCGCCAA
GTATGAAAAGGAGTACCAAGAGGACGAAGATGCAGAAGACGATGGTGGAC
CTGGTAATTCtttttttCGATATTTCTACACCCCTAGCCACCAGGGGCGT
TCACTCTAAGAGTCTGAAAAGTGGGGATCAATCGAATTTCTTTTggcaaa
actttggaaaatctgaaaatcttttgccttTTCTTTCCCGTTTTGACATA
GGAGGATATGAAAATGttttgccttaaaatggacaaagatttttaagaaa
agggACCTAAATTAAAAGGCCTAAATTTTCCGCCTTCCTCATGACAATGC
CTGTGGCATCACCAAAGAGCCAAACTTCACCTCCTGGCCAAAGATGTTAT
GTCACGCaagttttggtaattttcaCAAATCGAAAGTGATATTTATCACA
TTGATCTAGACTCGATTGTAAAATTATATTATGCTCATGttttttttCAT
GCTATAGGTGAAACTTCTCGTTTGCTGGAGAAAGGAAAATGA Coding sequence (CDS) from alignment at sc0000200_pilon:266134..273575+ >XLOC_042604 ID=XLOC_042604|Name=XLOC_042604|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2880bp|location=Sequence derived from alignment at sc0000200_pilon:266134..273575+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGACGCTGACAAAAAAGCACCACCAcctaaagaaatttttgagaatGG
TGGAGAAGAAGATGGACGCTGACAAAAAAGCACCACCAcctaaagaaatt
tttgagaatGGTGGAGAAGAAGtGTTCGATGATCCGGATGGcattttgaa
gaagaagaagaagagcaagaaTAAAGCGGTTCCTTCTTCACAAACTGTAA
GATCGTCTGCCACAATCAACATTATACGAACTCTCAAGtGTTCGATGATC
CGGATGGcattttgaagaagaagaagaagagcaagaaTAAAGCGGTTCCT
TCTTCACAAACTGTAAGATCGTCTGCCACAATCAACATTATACGAACTCT
CAAGGATGTTGTGACAAGTGAAGATGAAAAGGGAATGGCAATGAAGGATG
TTGTGACAAGTGAAGATGAAAAGGGAATGGCAATGAAGAGAGTATTGGAG
TTAGAGAAAGAGCTTTTGGACATGCGCAGTTCGAAGaatgaaagtgaaga
agaagtGAAAGGGTTGAAATATGAATTGGGTGGTcttcaaaagaatttca
aagagTTAAAAGATTCATCAGCAGCATCTCTGGAAGAATTGGAAAAAAGA
GTATTGGAGTTAGAGAAAGAGCTTTTGGACATGCGCAGTTCGAAGaatga
aagtgaagaagaagtGAAAGGGTTGAAATATGAATTGGGTGGTcttcaaa
agaatttcaaagagTTAAAAGATTCATCAGCAGCATCTCTGGAAGAATTG
GAAAAATTCGAAGTGACGCGACTTTCAGATAAAAACGATGctctaaagaa
agaaaatactgACCTAATGAAACAAGTGGAGAACTCCATGACGCAACAAA
TTGCAGACCAGAAAGAATGCGAGCTCTTGAAAACTGATCTAAAAAACAAA
ACTGAAGAAATGAAAGTGTTGAAATTACAAGTTGATGAAATCAAAAGTCA
ACTTCTCAATTCTATATCCAGTAATAATGAGTCGCTTCAGTTCGAAGTGA
CGCGACTTTCAGATAAAAACGATGctctaaagaaagaaaatactgACCTA
ATGAAACAAGTGGAGAACTCCATGACGCAACAAATTGCAGACCAGAAAGA
ATGCGAGCTCTTGAAAACTGATCTAAAAAACAAAACTGAAGAAATGAAAG
TGTTGAAATTACAAGTTGATGAAATCAAAAGTCAACTTCTCAATTCTATA
TCCAGTAATAATGAGTCGCTTCAGGTCATTGAGgaagcgaagaaagaaat
gaaagaaatgaccgagagcatgaaacagaaagaagaaaCGCTCAAACAAC
AAATCACTCAACTTGAAAATGATTGCAAAGCAAAAGAAGACAAAATTAAC
AACGAAAAAGATTCCCTTCTAAAAGAGGTCATTGAGgaagcgaagaaaga
aatgaaagaaatgaccgagagcatgaaacagaaagaagaaaCGCTCAAAC
AACAAATCACTCAACTTGAAAATGATTGCAAAGCAAAAGAAGACAAAATT
AACAACGAAAAAGATTCCCTTCTAAAAGAGCTAAATGAAGAACgagagaa
agtgaaagtgaataACAGTGAAATCAAAGTGTTAAAGAACGGAATCGAAA
AATTGATCAAAGAGAAGACTGACGAAAAATCTTTCAGAATCAAACTAAAT
GAAGAACgagagaaagtgaaagtgaataACAGTGAAATCAAAGTGTTAAA
GAACGGAATCGAAAAATTGATCAAAGAGAAGACTGACGAAAAATCTTTCA
GAATCAAAATAGCAGAGCGTTTAAAAATGATTATTGAAGAGAAAAATGCT
ATGGAAGCTGCTTACAAACTCGACCTACAACAAGTGTCATGCGATTTTGA
AGACCTCAAAAAACACTTCGTTCACGTTACAAGATAGCAGAGCGTTTAAA
AATGATTATTGAAGAGAAAAATGCTATGGAAGCTGCTTACAAACTCGACC
TACAACAAGTGTCATGCGATTTTGAAGACCTCAAAAAACACTTCGTTCAC
GTTACAAGCGACAAAGcagaaatgtttcaaaaattgagCGACGCTGTGTT
CGAGAAATGCAAGAAACAACGCTGGGTACCTGACATTGAATCAGAAAATT
GTACAAATTGTTGTGAAAAATTCTCTTTCACTCTCAGGAGGCGACAAAGc
agaaatgtttcaaaaattgagCGACGCTGTGTTCGAGAAATGCAAGAAAC
AACGCTGGGTACCTGACATTGAATCAGAAAATTGTACAAATTGTTGTGAA
AAATTCTCTTTCACTCTCAGGAGGcACCACTGTCGAATGTGTGGTCATAT
CTTTTGTTTCAAATGCTCCGATCGATGGTTGCTTACTCCACACAATAGcA
CCACTGTCGAATGTGTGGTCATATCTTTTGTTTCAAATGCTCCGATCGAT
GGTTGCTTACTCCACACAATAGCAAGAGAGTTCGTGCTTGTGATGTCTGT
GCGGACACGTACACAGAACAACATTTGGATGCTGAACCAGGGCGTGATAT
AGATATGACTGACGCCCCTCCACAACAAATCAAGAGAGTTCGTGCTTGTG
ATGTCTGTGCGGACACGTACACAGAACAACATTTGGATGCTGAACCAGGG
CGTGATATAGATATGACTGACGCCCCTCCACAACAAATGTATAGAGAATT
GACAGGTGAAGAAATCGCCAAGTATGAAAAGGAGTACCAAGAGGACGAAG
ATGCAGAAGACGATGGTGGACCTGGTATAGAGAATTGACAGGTGAAGAAA
TCGCCAAGTATGAAAAGGAGTACCAAGAGGACGAAGATGCAGAAGACGAT
GGTGGACCTGGTGAAACTTCTCGTTTGCTGGAGAAAGGAAAATGAGTGAA
ACTTCTCGTTTGCTGGAGAAAGGAAAATGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000200_pilon | genome | sc0000200_pilon:266134..273575 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1408-1440:7410 |
| Aaloc | 1321-1404:6919 |
| Aaloc | 1213-1317:6538 |
| Aaloc | 1138-1209:5953 |
| Aaloc | 1006-1137:5588 |
| Aaloc | 880-1002:5078 |
| Aaloc | 766-879:4586 |
| Aaloc | 613-765:3621 |
| Aaloc | 379-612:2910 |
| Aaloc | 220-378:2566 |
| Aaloc | 178-219:1933 |
| Aaloc | 64-177:721 |
| Aaloc | 1-60:1 |
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