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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000007_pilon:924743..930203+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_042520 ID=XLOC_042520|Name=XLOC_042520|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5461bp|location=Sequence derived from alignment at sc0000007_pilon:924743..930203+ (Clytia hemisphaerica_ch_hm2_pilon)
CTTTCAGATTTCTGCAAAGACAAGCCCATCTTCAATGAACACCAAGTTGA
GTGCAATAAATATATCATATGCGGCGCCCTCGTGCCGGTTATCCTCAAGT
GCCCAGAGCCACTAGCATGGGACAGCAGACGAAACATTTGTAATTGGAGA
CGCTACACCAAATGCAAAACAGGTAAGGGTATCTTAAATGTATTTTGCTG
AGGAAAACGCTgctactttataagaactatcGCTTGATGGAGAATTGAAC
TTATTTAGTTTTCTTTTGCAAATAGTTtcaaaagaaatggaaaatcatAC
TTTTATCATATTAGTTAAACCAAATTTGACCTCTCTTTTAGAACCAACAA
CGACAGCTACCAATACTAACCAAAAGTGACCAAACACACTATACCTTCTA
ACACCAGAGGTTGGTACCATAAAACTGAGCGTGTAAAACTTTAACCGTTT
TTTAAATGGTATTGAGTAATAGCTGAACACTATTCTTCTACCGGTAGTAA
AAAAGTTCAACCTTCTCCTATTTCACAGTGCTTGCTGAATTGAAGTGTGA
TCATACAAAATGTACCTTACCAAATTGTCGTTGTCAAAGCCCACAGGTTC
CTGGTGAATTGCCAACTTCACAGGTCCCACAAATGGTTCTCATCTCATTC
GATGGGCCTGTCAATCAAGCAAATCATGAATTTTTCACTGAAACTTTTGA
TGCTCGGTTGAATCCAAATCGATGTCCAGTAAAAGTGTCCTTCTTCGTAT
CGGATCATGGAAATGATTATAAATTGACTCAGAAGCTTCATCGGAAAGGT
TGGTACATTGTCATCtttgaattctcaaaaaaaaacctTGGCTTATatat
agcgagcacctcactaaaaaccgggatttttcatctcgtttttaatgagt
tccactttgacgatttttgaaaaatagaagcttttcaagtgttttgacgc
aaattcgattttttcctcctgcaaaggcttcaaaagtttaaagtgacgtc
aaaaaaccgaatgtttggagcccgaaaacctgggcttaaaacattcgaaa
atgtcgcaaagtggaatggacgttaattgcgtagaaaaaacgcgggtgac
gtataggtctagtataggctatggCTTATACAGATGTGGAAAAGTAAAAT
TTGTCATGATTGTCCGACAATCTCAATATGACTTGATTCAGGATTGAAAT
ATTTTAGTGGTCGCAATTTCAGCTTTATCAGTATTTTAGTCCTTATTCCT
AATGAGTTCTGCTTCAGAAAGGCAGAACATCGgagaatttcatgaaaaag
gactTCTGTGTAATGTGgtgaaatttctttcttttttttaaagtagtttt
tttcttttatataaagGTCATGAAATCGCTGTCCGATCGTTAGCACCTGA
CCAAACACACGGATACTGGAAAAACATCAGCTATCTTGATCTCGTCAAAG
ATGTGATTGGTTTAAAGCTCAAACTCACATTGAATGGAATCAATCACGTG
ACCGGTTATCGAGCACCTTTCCACCAATCAGCTGGTGACACAACTTTCGC
GGCTCTACAAGAGTATGGGTTCGAGTATGATTCGTCTCTACCAATCAGAT
CGAAGGAGAAACAATGGTGGCCGTTCACGATGGATTCTGGGATACATTCG
TTTGATTGTTTGTCCCCTCCCTGTCCGAAATGTAAGTAAGCCCATTCATA
CTCAATACAAGTTGAATAGTTGTAAGAGCTATGAGAACTTTACACCACGG
TCATTGTATGGGCTAAACATCAAGCGGCGATACTTTTTacaaaaagcaga
aaaaattaGCCAAACCAAGAAATCTCTCTCATTTGGAAATTGATTATATT
ATATTTCAGTTATATCTTAAACAAAAGATAATTCGCTCTTTCAGACTCGT
ACCCTGGATTATGGGAGTTACCATTGACGTCATTGAGTGACGGAGAAGAA
TCTTGCAGGACCTATCAATCGTGCACGAATTACGTTCAAACATCAGATGG
ATTCTACGAtttcttgatgaaaaatttcttcCGATTGTACCAAGGAAATA
AGGCACCTCTTACACTGGCAGGAACAGCTTCATGGTTGATGTCCCCAAGC
CATCCTTACAGAAGACAAGGTATTAGGACTtttctattgtcattttacag
tGTCTGTGTTTGATAAATGGTTACGATTCTACGGGTGAGTGTATCATTGG
ATTATTCAATTATGCAGGTTCATATTGCTGGGCTATCAATCAAGTCTCAG
ATTATCAATTTATACTGGGGAACTGCGATGCTTTTATTTCCCTATTTTCA
TTGTCTGCCGAATTCCGTTCCATACAATACTTCGGTCCTTTATCCGCTAC
CTATATCTCTATGTACACGCATGTGTAAATGTACTGTTATAAAGTATAGT
TTTAAGGATGAATAGAGGGCATGAATTTCAAAGTTAACAGCGAGAAAGAA
GGGATGGAACTTTTACCGTCAGAGAATAAAAAGACATAGCCATAGCCTAC
CATAGGACGTTCTCGTGTCTTGTGAGAACTTTAAATTGTTTGAAGAAACA
CGCTTGTCCTGTTCAGAAGTTAGAAGAGGAAAAGTCAGACACCAAATAGT
CACAAAGATTATTCTGAAATAACTAGAAAAAGTCAGAGCGCTAATGCAAG
ATGATTGAAACGATTATTGAGTAAGAGAAGCAAAGAAGGAAAGTTTGGAG
GtatgtttcttttattgataGAATTTAGAGTTGTAATCAATTGACAGTAC
TAattggtcagccccggtgacccttcaaatcggtTCCGCTGtttttttCC
AGCCGAGTCGCCATCATCATGGTGGGATTTGGATAATCAGCTTCAATTCC
GATTTTTCCCGATTCGATTTTTGGACAACCGGGTTATAATGATATGTGTG
CGTCGGGATGCGTTGTAATTTCATAATGATTTCATATAGCGCGTCGGCGT
TATTGCATCAGCCGTTATCTCCCTTATATTGCGCCACCTCTTTCGAAGCG
TACTGTGGACAATTTTCTGAAATGTTTGAGTAGATTCGCAGTAGTAGCTG
GCTAAGTTGTTTCACAAACGTGATGGTTGAATGGCTGGAAGAAGAGTTCA
AGCAGTCTCAACTTTCATCATATCTTGAGGTTGAGGTGAGAGTTTTTGAT
TTATATGAATCAAAGTTTATTGATTCCTtgtcaaagttattttcaaaaaa
gatagcaTATTCAtagtttatattttcttttttgcataTTATAAATCTct
attataaatcaaaatcctgcaaaatttactaaaaatgaACACTCAAATCT
CTCTGTTGATTGACAAAAGAATAATGGACAAAATGTATATATGAATGAAT
TTGgtgttgaaatgaaaatgttggtAATTCGTTGAttgtttattgttgtt
ttaCTATCTGGTGTTACATGTTTATAGTATCGAAGAAGTCCATGGCTTTG
CATCGTTTGAGCTTGGTATTACCATCGCCTTCCTGTTTTTGTTGTTGGTT
CGTTTCTTCACACCTGAATACTGCACTGAAAGAGTTCATAAAAGTGATAG
GTAAGCTAAAGGTCTCTTTTTGATCCATCAAAATTTGCTAACGCAGACAC
TTTAACGTGTGTTTCTAGGTATATCTTAGAAAGCAATCATTTTATAGTCC
ttccattttcatttgaatAATGTCTTTTTATTCGTCCAGCCATCTCTCAA
AGAACGTTAAAAATCTATGATAGTCTTTTGTCTCAATGAAAGAATAAAAG
GGATTTGTTAGCGCTAGTTTGCAAGCGTTCTGTTTCATTACTTTAACAta
caaaatatttgataaaaagtaTACTGGTATAGGACTATACCTTAAGCAAT
TAATCATGAATGATCTAAGTTTTAAAGAGTGAAGTGATTTTGTTcatgtt
gttattattatttacCTGTGTATGGGACTTAAATATCTTCATTGTTTTGT
TGTAGATATGCTATGCCGGGATCAATCAATAACCAAATAAAGACCCTGtc
aacgcaccggacttaacgaacacggGACATGCGAAAGTCcagtgtaaaat
gagaatttttttaccatcggacaatctctacaccggacttaaggaagtcg
gatgtctggtgtcggagaaggatatttttttccaccggacaatcaaaaca
ccggaaaCACTAATTCAATGTCTTGTTATTGGAATTATTGCTGTTGGAAT
AACATTGGTATTGGACAATAATTAAAGACTTTATTTCAACTAAAGAGTAT
TACATATTTCAAATGTATTGCAAagaagtactctcgggtacctaatagcc
ggggggggggttggaataagcaggggggttggaaaaaatctcaaaattta
ataagcgggggggttggaataaaaatgtcctgggtggaaaatgtttgaaa
aggaggctaatacagcagaattaagacaaaaaagggaactttcaaaaaca
ttttcccaaaaattaataagcgggttggaataagaatgtcctgggtggaa
aattttcgaaaaattaattagcggggggggacggctattaggaaCCTGAG
AGTAATTAATATTGTACAATAGTAATATTGTTAATATTTATAGACAATTA
TATGATTATCTAAAACAAGattgttcaaaatttatgttaaaaatgaattt
ttttcaaaccttgttacacattttttttataagcaactccatttTTCGGG
CCAGGCCTGGAGTTGCTAAGGGTTTTTTGAAATCCAGGCTCAAAGTTTGC
TTAAAGattttcaagcacgtttttgcattttttaacaatttttcaatttt
gaatgggcagtagaggcatttttcgaagattttcaaGTTGTGTCAAAGTT
CTTTTTTAttgctgaggaaaaaagttgctAATTTGGATTTGAGGCCTCAG
GGTTGCTAAGCAAGGTCCTTATTTTTTGGGCCATATTGAGGCCTGAGCCC
TAATcaactcggttgcttataaaaaaaatgtgtaatcgaCCCTGACAAAA
TGTTGACGATTTttgcacccattttgcctaagccACCTCCAGGAGTAGTT
TATCGTTATCTTGTGATCACATATCCTTTTTGCTACTCTCTCTTGATCCA
GCTTATCCTTTGATCTATCTTATCCTTtagggctgaccttccagcgcagc
tggtttattttataTCGATTCGACTCGGTTCCCAACCCATCCATAACGTC
ATAAAACGAATGAATGTTATTGATTATCTTTGCTGATATTCCCAACCCAT
TGACTCTATACCATTACCAATACTTGTTTACGTTTTGAATTCTTAGTTTT
GAtggtttcaatttcttttagGTTTCATGAAATTCCTAAATCACATCGGT
TCGTTCAAAGATGTTTACGTTGTCAGTGGATCACAGGCGTTAGATTGGAT
CCGCAGCCCTGTATCGAGCGAGAAAAAGATTGCCGATCGTCTAAAGTCTT
GGTcgtgttaa Coding sequence (CDS) from alignment at sc0000007_pilon:924743..930203+ >XLOC_042520 ID=XLOC_042520|Name=XLOC_042520|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2380bp|location=Sequence derived from alignment at sc0000007_pilon:924743..930203+ (Clytia hemisphaerica_ch_hm2_pilon)
CTTTCAGATTTCTGCAAAGACAAGCCCATCTTCAATGAACACCAAGTTGA
GTGCAATAAATATATCATATGCGGCGCCCTCGTGCCGGTTATCCTCAAGT
GCCCAGAGCCACTAGCATGGGACAGCAGACGAAACATTTGTAATTGGAGA
CGCTACACCAAATGCAAAACAGCTTTCAGATTTCTGCAAAGACAAGCCCA
TCTTCAATGAACACCAAGTTGAGTGCAATAAATATATCATATGCGGCGCC
CTCGTGCCGGTTATCCTCAAGTGCCCAGAGCCACTAGCATGGGACAGCAG
ACGAAACATTTGTAATTGGAGACGCTACACCAAATGCAAAACAGAACCAA
CAACGACAGCTACCAATACTAACCAAAAGTGACCAAACACACTATACCTT
CTAACACCAGAGAACCAACAACGACAGCTACCAATACTAACCAAAAGTGA
CCAAACACACTATACCTTCTAACACCAGAGTGCTTGCTGAATTGAAGTGT
GATCATACAAAATGTACCTTACCAAATTGTCGTTGTCAAAGCCCACAGGT
TCCTGGTGAATTGCCAACTTCACAGGTCCCACAAATGGTTCTCATCTCAT
TCGATGGGCCTGTCAATCAAGCAAATCATGAATTTTTCACTGAAACTTTT
GATGCTCGGTTGAATCCAAATCGATGTCCAGTAAAAGTGTCCTTCTTCGT
ATCGGATCATGGAAATGATTATAAATTGACTCAGAAGCTTCATCGGAAAG
TGCTTGCTGAATTGAAGTGTGATCATACAAAATGTACCTTACCAAATTGT
CGTTGTCAAAGCCCACAGGTTCCTGGTGAATTGCCAACTTCACAGGTCCC
ACAAATGGTTCTCATCTCATTCGATGGGCCTGTCAATCAAGCAAATCATG
AATTTTTCACTGAAACTTTTGATGCTCGGTTGAATCCAAATCGATGTCCA
GTAAAAGTGTCCTTCTTCGTATCGGATCATGGAAATGATTATAAATTGAC
TCAGAAGCTTCATCGGAAAGGTCATGAAATCGCTGTCCGATCGTTAGCAC
CTGACCAAACACACGGATACTGGAAAAACATCAGCTATCTTGATCTCGTC
AAAGATGTGATTGGTTTAAAGCTCAAACTCACATTGAATGGAATCAATCA
CGTGACCGGTTATCGAGCACCTTTCCACCAATCAGCTGGTGACACAACTT
TCGCGGCTCTACAAGAGTATGGGTTCGAGTATGATTCGTCTCTACCAATC
AGATCGAAGGAGAAACAATGGTGGCCGTTCACGATGGATTCTGGGATACA
TTCGTTTGATTGTTTGTCCCCTCCCTGTCCGAAATGTCATGAAATCGCTG
TCCGATCGTTAGCACCTGACCAAACACACGGATACTGGAAAAACATCAGC
TATCTTGATCTCGTCAAAGATGTGATTGGTTTAAAGCTCAAACTCACATT
GAATGGAATCAATCACGTGACCGGTTATCGAGCACCTTTCCACCAATCAG
CTGGTGACACAACTTTCGCGGCTCTACAAGAGTATGGGTTCGAGTATGAT
TCGTCTCTACCAATCAGATCGAAGGAGAAACAATGGTGGCCGTTCACGAT
GGATTCTGGGATACATTCGTTTGATTGTTTGTCCCCTCCCTGTCCGAAAT
ACTCGTACCCTGGATTATGGGAGTTACCATTGACGTCATTGAGTGACGGA
GAAGAATCTTGCAGGACCTATCAATCGTGCACGAATTACGTTCAAACATC
AGATGGATTCTACGAtttcttgatgaaaaatttcttcCGATTGTACCAAG
GAAATAAGGCACCTCTTACACTGGCAGGAACAGCTTCATGGTTGATGTCC
CCAAGCCATCCTTACAGAAGACAAGACTCGTACCCTGGATTATGGGAGTT
ACCATTGACGTCATTGAGTGACGGAGAAGAATCTTGCAGGACCTATCAAT
CGTGCACGAATTACGTTCAAACATCAGATGGATTCTACGAtttcttgatg
aaaaatttcttcCGATTGTACCAAGGAAATAAGGCACCTCTTACACTGGC
AGGAACAGCTTCATGGTTGATGTCCCCAAGCCATCCTTACAGAAGACAAG
GTTTCATGAAATTCCTAAATCACATCGGTTCGTTCAAAGATGTTTACGTT
GTCAGTGGATCACAGGCGTTAGATTGGATCCGCAGCCCTGTATCGAGCGA
GAAAAAGATTGCCGATCGTCTAAAGTCTTGGTcgtgttaaGTTTCATGAA
ATTCCTAAATCACATCGGTTCGTTCAAAGATGTTTACGTTGTCAGTGGAT
CACAGGCGTTAGATTGGATCCGCAGCCCTGTATCGAGCGAGAAAAAGATT
GCCGATCGTCTAAAGTCTTGGTcgtgttaa
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007_pilon | genome | sc0000007_pilon:924743..930203 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1054-1191:5324 |
| Aaloc | 829-1050:1897 |
| Aaloc | 514-825:1369 |
| Aaloc | 244-510:531 |
| Aaloc | 202-240:370 |
| Aaloc | 184-201:344 |
| Aaloc | 10-180:1 |
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