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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000211_pilon:78493..86673+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_042482 ID=XLOC_042482|Name=XLOC_042482|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=8181bp|location=Sequence derived from alignment at sc0000211_pilon:78493..86673+ (Clytia hemisphaerica_ch_hm2_pilon)
aGACTAACGATGAATGATTCGTCCCAATACCTCCAGCAATTACTCGGTCA
ACAACCAACAGGTAAACAAGTTTTAACTACCTTAAATGGATGATTTTTAT
CTCCAAATCAATTATTAGGGACTGcagtagactctcgcttattcgaactt
ttatCATTCGAatcactctataattcgaacttattcccaATCCCCGTCAA
GGAAAAATCTactttttctctaattttttctataattcgtatctctctgt
aattcgaacaaataaattttccccgtttgagttcgaattagcaagagtca
actgtaattaTTTCGtgaaatcgcgaaaattaatccagcTTAATTCCATC
GACATGTATTCCTTCAGCATACTGAACTTCTAGCCTTCTTGCTGACTTCA
AAATTAATAATAGTGCAAAAACCCCTGTCTCACTACCTTTTGGATTATCT
TAATTTTATCTACTTAAGTATTATCCACTTTCAGCCCATTGGCggacctt
aaattcaataatAACGCCCCTGTCTCAACCCCTTAGTAGACATTTTACTT
TTATCAAATACCTCCCTTTTGGGGGAAATATTTGGTaaccctttttctga
tacaaAGCACTTTATATAAAAGGGCATTGATTTACATGTATACAAGGTGG
CATTTTTTGTCAACACAAAATGATTTTTATCTCCATGATAAATTTTGTGT
TGACTTTAGATTTTTCATTAAGCGGTTTGAACTTTGTCATAGAGGCTCGT
GCATTTGGTTTTTCACCCTGAAGTTTTACTTGATAAATTagctgattttt
ttctattttgaaggTATTTTTACAGTCATGAATTTATGATAAACTGACAA
ATTTGGATTTAATAAAGGGTATTTCTAAAGATTCGGTCTTGTTTTGATGT
CTAAGAGGGGACTAAGGTGTTTAAGAGTCTTTCTAAATGAATGAGTTTGT
TTGTTCGCGGCAATTATTGGACCTCCCAGTAAAGGGTTAGTTTGCTTGAC
CTAGGAGACGCCTCATTCTGctaatttacatttttatagACTTAAAATCC
TGAAAAGAGATAacgttttttgattttatttacaTAATGGAAAATGCCAT
GGAATTAACAGTTTTACAAATATTTCGTGTCCAAGTAAAAGGAGTTACAG
ATTTGAGGGAAATCACAGCTCTATAGTTTCTTCAGATTGGACtttgaact
tttgaaagaattcatATAAACCGGCGGGCAAGAATAACGTTGATGATCAC
ATTTTAAAAACTTGCCAAAAACTTAAAGAAAACTGATACTGTATCTAATt
ccaaaaagaaagggaaatgGGTTGTCaaaaaaaGTAACACTCTTTCCTAA
TGTATGATTGGTCGAGGGGTCAAATTACTTGTggtttttcgcgccttttt
tcacctttttttccctgtgtaattttttttgatgatggtatataaaaatg
ttgcatcaaaaaattgttattcatattttgattattttttcttatgaTGT
AAGTCAAGTGGTAttgtttaaattttattttgggGTCGATCTAAAGTGCT
GCCGGTCAGACAAACGAAGTTTTTGTCTGGGAATTTAAGTAAGTAGTAGG
TTATTCTTTGTAATCATTCAGTTTTTTGATCAGGGTCAATTTTACTTTTG
AATGTTTAAGAAATTTAAATGTTCATTTTTCTCGGTACTCTTGAAATTTT
CGCATTGGTTAAACACGACGTTTCGTGACAGATAAACGATAGcaatttta
cacccctgtctcaataacccgtgatttttgatagtttttttaCCCGGGCT
GCCAATTTTCCACCGGAGACAAAATTTAGCCTGTTTATGAGACTTTTTTC
ACCAGCCTATTCACCGGGGCTGATCTGACCGAGCCATTGACCCAATTTTT
GTAGTAGGATACCTTGAAATGTCAATTTGAACCTAAAAACAACAAGTATT
AaatgatatatatttttgaagaatttaagttaatttcaaaCATTTAATGA
TTCAGCTCTtagtcagcaaaattttcaatgtgTTTATTATAATCTTTTGG
TCCTTGAAATTTAAGTGGTTCTAAAAAACCTAAAGTGGAAAGAGACATTG
AGATTTAAAAGGTATTTCTCATGTCCCAGACCACAAGGAGACTCTTAAGT
GTATGTTGTTTGCAGTCAAAACATAAATATTAGACCTGCATCTCGAAAAG
GGGAAGGACCTAACGAGCAGGGAAtgaagttaagaaaaaataCAGGACAT
ATAGGCAGGTCATAGTATGCCTTCTCATACTCTGCTTGCACATAACACTG
TTTGAATGTCAATTTAGTATtttattggcgttatttacaTTATAGATGTT
GTTTTAGCTTTAAATGGCACCAAAACTAGAAGTTTGGCACTAGCCCTTTT
TATACATTTGTATACATTTTAAAGATGGagctaaatagaccttttcataa
attacatcacgagcatcacttgcctcgttttgaaattattgccatggtga
ttaactcccagtggattttattgcaactactttctattcataaaaaaatc
atttaatgtctcaagggaaaTCGTTTGAATACGAaccaagtgatgttcgt
gacgtaatttttgaaaaggtctattccctGGATTGACTCGgaatcttatg
aaaaaataaaaagcctGCTAGTAGTTTTCTATCTCTAGAAATCAGAGATC
TAAGCCGATGTGATCCAAGTTGGTATATAACGTAAGTTGGTcaaatgtcg
acatccctcttctaatttcgacacctttttttagagataggaataatgga
aaggtcggaatcactgatggaaattttctttgcttagcaatcagaGAGGA
ATAAATCGTTTGTCTATCAGTAactccgaccttcctattatttctAAAGA
AATGTGTCGAAATTggaagagggatgtcaacattagacgaGCTGGGTATG
TCATCTTTATGAATGGCATTTTTATATCAAATCTAACTTTTCGTTTCATA
GAAGGAAGTCCACAGCTACCTGTGATGAAATCTGAAGACGAACAAGAATA
TAATTCGAACACACAAAATGTAAGATTCttatccagctggcacacaacct
tgtttcaacgttcatctaacgttatatagatgTTGTGACTGTAGTATAtc
gatttctttttttactgttttagattagcatattttgggaaatttttttc
ctgttaAGAAACTTATAAATTCTTTTATAAATATAGTAGAAATGTGATAT
TTACCATGGTTTTAGAAATATACAAGTTTGACTTTAGCATAATTCCAAAA
TTCCTGGAAATAgtatatttcttttgatttcaaggATCTGTAttatcaaa
tttataaaaatttacaacGTATGGAAGTAAAATTTTCTCCCTTGTGCGGA
ACAAATCTTAAAGCTTCACTTTTTATTAATCGAGAAAGTTTCCTCTCTAG
GTCCTTCTGGGCTTTGAACTCGATGCTCAATGCTCATCTTACAGGGGTAT
TTTCATTTCTCCGCAATTTTCATTCTAGGGACTCAACACTATAGTTTTTA
TTGCCAAATAAGGGTCGGCTAAAATCTAAGTTCATTTCGTGATTTTACAA
TTTTGTAAAGGATTTAAGCCGATTTTACCTCGAACTCCTTTCATCTCTTT
CTAGTCATTCATGGCAccagaatttcaatatttttcacaaCAACAAAATT
CACCAACCGAATTCACCAACATCCAATCACCATCCAACTTCAGTCTCTTC
AACACTGTAGCCTCGCTTTCACCCAATGGAATGAGCGCAGCCAATCAACA
GGCATTGGCTAGAAGAATGAATGGATATCACAGGCATCCTATGGTACGTA
Ccttcccagccggcacacaacgtcaaaacaacgtccatttgacattcata
acgtctaaataacgttatttgaacgttaaaacaacgtcgtgtgccagctt
tTATGGTTTTCTTTCTAAGAACTAGGACACATTTTCTTTTactataagca
taacgcttgtAAGCATtcattgtttaagaacaatagaatgctaagcatat
gGTTCCATTTCTAAAAACTACAATCTcagacaaaatatttgttaCAAATG
TCACAGTTTTTGACCCTTAAAAACCCCTTCACCCAGTATCAATGTTGTTC
AGGGCGAAGAAGGCCTCCAATTCAATATTGATAATGAGAGGGGTAAAATA
CACTCTTTTAAAGTTTAAGGTTTTTGACATTATATTCTGTCAAAGATTGT
GGTAAATGTATTTTTACTATAATCACAACGCTTATAAGCATGTACAGGCT
CAGTTTATAGCatctaaacaatggctctattttTAAGAGCAATAGAAtac
ataatgcgagcctgatataggtagacacttgcttatgaaaaaaacatgta
catttTTGTTGGGCCTGGTATAGGGGTATATATacttgcttatgaaaaaa
aaaaaccagtTGAGGTTTGTTGAGGTTCAACTGTTGCTAACAAAACGACA
GAAAGTTATAAGCTGTCAAGTTGGGTTCAACAACCCAATAGAAGAAAAGG
TTTCTGCGGAGCTCTGAATAACTCATCGTTATTTAGATGGACAATTTTAG
TCCTTTCAGCAAAATGAACTGCCAGATTTTATAGACTAACAATAATCACA
AAGTGTTTCAAAAGGAATGACCtaaaatcttatcatttttaacaaaacca
taacttttttcgtttgttCAGGTCCCAGGATTAATGCCGAGTCATATTGA
ACAATTGCCAGATACCACAATCTTTCCTGGTAACTTCAGTTTCGAACTTT
CCCTGGGTCCACACACCGAAAGTGCAACCAAGTCTGCAGATTACACGTTC
TCGCCATCCCTCAAGAAATTATACGTTCAAAAAGGTAAGCTGAATTaaat
acccagctggcacacaacgttgtttcaacgtttatctaacgttcacaacg
tccatttaatgttagatgaacgttgaaacaacgttgtgtgccagctgggt
atgaTGGAAGAATTTAAATGTCTTTTAAAAAGGTGGGAGATGGAAAACAT
GTAAGATGGATATAGATTTATTAAGTCCGAAGGGCTacgtcacgtgacat
tacaatagaatttcagcgcttgaccaataagaagcttcccaggttttcga
aaacaatagcagcaatatttttagcgatattcacttttctttgtttggaa
gagcttaaagcacgacatctagcccttcgggctttataaatctatagaTG
GAATTAGCAGAAACATAagctaaaaatgtcttaaaTACGTATGGTCTTga
tatcaaattttctttttggcaaGGAGGCCAAAAAGTACGAAATATATAAA
CTGTCTCTTATTCAAACCTCTacaattcgaatttttctataactcgaact
aaaacattggtcccctACTTCGGGCTGCTTAAGCAGGCAAATAGTAAGTA
AGTTTGtaaccgcagtcgagggcgacccaaaggctccctttacgtatagc
tgtctacccgaaggtaacgATCGCTTTGCAGCAGCAGGAAAATACTGTAA
AATGCTCCCTTTTGATAGCTGACGATTCGAAAAAGATGAAACTTGAAGTA
CTATAattcaaatattgttttttcttgtacactGTAAAATGGTCCCTATA
ATTCGAATTAGAATTTTAGTTCCCAgaagatcgaataagagagaaaCAAC
TGTACTATTATTTGGCTAACTGTCAACACTTATCTTTCCTTATCTACATC
ATAGGAGCACATTGTCCATTCAAACTAAAGACATCTCACCAACCACCACC
AAACACTTACATCAAAATTCTCCCCGTATACAAAGGCTCACATGTTCTTT
CTGAACCCGTCAGACGTTGTTCCAACCACGCAGAAGGTGACGATGAAGGT
AAGATTCCccgattttcaaatattatttccCGATTTTCTCGGATTTTTGA
ACCCGACCAACGTTGTTCCAACCATGTTGAACGTGACGATAAAGGtaagt
ttccccgatttttttcatccgatttttaaagcttatttccccgattttct
tggatttttgAACCCGtccgaagttttttcaaacatgTTGAAGGTGACGA
TGAAGGTAGATTTCCCCGATTCTTCATCCGATTTTCGATGGAGGCGGGTC
TAATAtagagatttttttcaaatccaatTTATTCAACTTTTCGATGATCT
TCAATCAATCTTAGCTATTAACTATATTCAtttcgattttagcctggatt
tttctactttttttacAACTAAACTGAAATTAACTAACCGTCCGAGATAT
ACGACACAATTATCTTGGCTTTTTTCTAGGAAACCCAAGGTACCACTTCA
TCCGCGCCAATAACAGACAAGCCCATTATGAAACTTCCGATTCGGGCCGA
TTGTATCTTACCATACCATACACTGGCCCACAAGTAGGTGCCGAGTATCA
AACGGAACTTTTATCCTTCATGTGTTTCAACAGCTGTGGACATAGCAGTC
ACTCCAAAAGAAGAATCGATGTTATCTTCATGCTCGAAAATAAGTAAGTA
CTCCATATAtattaaattcaaaacaattcaCCTGGAAGGTTTTTATCTTC
TCCTCGTAAGGCTatataaaattataagaaacttctttaaattcatattt
tttcttgcttgactCAAATTACGAAAACCACTTTGTATGGTAGTACATTA
TCTAAGAATCGATTCTAATCCGCTTGATTTCTCGCCAAAAGATATTCGGG
AGCAGGTATTTGTACAGCGTGAGATGCTAGGCAATTCGATCTgcctagcc
agggtgcagtGCGCAGTGCTGATTATTCCCAGTAAATACGAAATGCATAA
ACCTGCTCTGCCATccaatctcctgaaagaagatagttggataATATAAT
GAGAGAGAATTCCCTGACTGAATTTGAGTCGAAAGCATATCTCTAAACTT
ACTTCTTATTCTTTATAGCGGGCAAGTATTGGCTCGCCAAGTCATCGAAG
TTCGTGTTTGCGCATGCCCAGGACGTGATCGAAACAACGAGGAACAAACA
ACACCACGTGGCATGGGAACAAAAGCTGGACGAAGAGGTTCATCCGTAGC
GTGTGCTCGCGGTGGAAAACGAAGAAAGTTGAGCAGCATTAATGGGGATG
AGGAGATGTGTATAAAGGTAAGAAGGAGTGGACGAACGAATGAGTGGATG
AAAAGAGTGATAGAAGCAACAAGTTAACCAGTGATCAAATAATCTTTTGA
ACAGGCTATAAGTTGTAAGTAAGAGGTTATTTAACGAAAATCCGGAATCA
TCGCCGAAGGAATTTTAACTTGAAGTAGGAGCTCGGTAGTTCAATAAATT
GATTGATGACAACAAAGAATGATACAACCGTGAACAGAACTTGCTGTGCG
ATAACCGATTTCTCACTGCTGACTCCCCCATTTCTCCACTTAGAATGTTA
TCTTGCAACTTTACTGACTCCACATCAacactagcgagtttatgtatttg
tacttttgaggacggtagagtgactgaagcgatttggaataacccgcact
tctaacccgcaaaatcgaggacggtaaaagtgctgatttaccgtcgtcct
cagctggtcatgatctagtcaaattagaaccttactgtctccgtcacaga
aaaacacaaataCATAAAATCAGTACTGAAGATggggggggAGAGACAAA
AAGACGAATAGTTATGCAAAGGATTGTATATCTTCTTGTTTTTCTCTTCA
TCTAGACCAACAATCCAATCCATTATCAAATCTTAACACAGATACAAGAA
GTTTTGGAAAACAATCAAATGGCTTTCATGCAAAGAAATACACAATCGTA
AGTCAAATCACTTCAAAGtgttgtacacgtttttttataagaacatccaa
aattgttaaagccttcggatgttcttaatttttttagttttaagccgtCT
TAGATTTAAAACCTGCATCACCAAAGTATTAGTTTTACCAAAACAtcaat
tcgaattatagagaactGAATGATAAAAAACCATCACGTGTGTCATGTTA
AAAGACGAGATACCTTCAATTCCTTTCACTTTATATATTACAGACCAACA
TCGATAGCTTCGAGTCCAGGCAATGTTTTTCATCCAATGGTTGGTATTCA
TCATGACAGCACAGATGAAGATAATTCATAG Coding sequence (CDS) from alignment at sc0000211_pilon:78493..86673+ >XLOC_042482 ID=XLOC_042482|Name=XLOC_042482|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2436bp|location=Sequence derived from alignment at sc0000211_pilon:78493..86673+ (Clytia hemisphaerica_ch_hm2_pilon)
aGACTAACGATGAATGATTCGTCCCAATACCTCCAGCAATTACTCGGTCA
ACAACCAACAGaGACTAACGATGAATGATTCGTCCCAATACCTCCAGCAA
TTACTCGGTCAACAACCAACAGAAGGAAGTCCACAGCTACCTGTGATGAA
ATCTGAAGACGAACAAGAATATAATTCGAACACACAAAATAAGGAAGTCC
ACAGCTACCTGTGATGAAATCTGAAGACGAACAAGAATATAATTCGAACA
CACAAAATTCATTCATGGCAccagaatttcaatatttttcacaaCAACAA
AATTCACCAACCGAATTCACCAACATCCAATCACCATCCAACTTCAGTCT
CTTCAACACTGTAGCCTCGCTTTCACCCAATGGAATGAGCGCAGCCAATC
AACAGGCATTGGCTAGAAGAATGAATGGATATCACAGGCATCCTATGTCA
TTCATGGCAccagaatttcaatatttttcacaaCAACAAAATTCACCAAC
CGAATTCACCAACATCCAATCACCATCCAACTTCAGTCTCTTCAACACTG
TAGCCTCGCTTTCACCCAATGGAATGAGCGCAGCCAATCAACAGGCATTG
GCTAGAAGAATGAATGGATATCACAGGCATCCTATGGTCCCAGGATTAAT
GCCGAGTCATATTGAACAATTGCCAGATACCACAATCTTTCCTGGTAACT
TCAGTTTCGAACTTTCCCTGGGTCCACACACCGAAAGTGCAACCAAGTCT
GCAGATTACACGTTCTCGCCATCCCTCAAGAAATTATACGTTCAAAAAGG
TCCCAGGATTAATGCCGAGTCATATTGAACAATTGCCAGATACCACAATC
TTTCCTGGTAACTTCAGTTTCGAACTTTCCCTGGGTCCACACACCGAAAG
TGCAACCAAGTCTGCAGATTACACGTTCTCGCCATCCCTCAAGAAATTAT
ACGTTCAAAAAGGAGCACATTGTCCATTCAAACTAAAGACATCTCACCAA
CCACCACCAAACACTTACATCAAAATTCTCCCCGTATACAAAGGCTCACA
TGTTCTTTCTGAACCCGTCAGACGTTGTTCCAACCACGCAGAAGGTGACG
ATGAAGGAGCACATTGTCCATTCAAACTAAAGACATCTCACCAACCACCA
CCAAACACTTACATCAAAATTCTCCCCGTATACAAAGGCTCACATGTTCT
TTCTGAACCCGTCAGACGTTGTTCCAACCACGCAGAAGGTGACGATGAAG
GAAACCCAAGGTACCACTTCATCCGCGCCAATAACAGACAAGCCCATTAT
GAAACTTCCGATTCGGGCCGATTGTATCTTACCATACCATACACTGGCCC
ACAAGTAGGTGCCGAGTATCAAACGGAACTTTTATCCTTCATGTGTTTCA
ACAGCTGTGGACATAGCAGTCACTCCAAAAGAAGAATCGATGTTATCTTC
ATGCTCGAAAATAAGAAACCCAAGGTACCACTTCATCCGCGCCAATAACA
GACAAGCCCATTATGAAACTTCCGATTCGGGCCGATTGTATCTTACCATA
CCATACACTGGCCCACAAGTAGGTGCCGAGTATCAAACGGAACTTTTATC
CTTCATGTGTTTCAACAGCTGTGGACATAGCAGTCACTCCAAAAGAAGAA
TCGATGTTATCTTCATGCTCGAAAATAACGGGCAAGTATTGGCTCGCCAA
GTCATCGAAGTTCGTGTTTGCGCATGCCCAGGACGTGATCGAAACAACGA
GGAACAAACAACACCACGTGGCATGGGAACAAAAGCTGGACGAAGAGGTT
CATCCGTAGCGTGTGCTCGCGGTGGAAAACGAAGAAAGTTGAGCAGCATT
AATGGGGATGAGGAGATGTGTATAAAGCGGGCAAGTATTGGCTCGCCAAG
TCATCGAAGTTCGTGTTTGCGCATGCCCAGGACGTGATCGAAACAACGAG
GAACAAACAACACCACGTGGCATGGGAACAAAAGCTGGACGAAGAGGTTC
ATCCGTAGCGTGTGCTCGCGGTGGAAAACGAAGAAAGTTGAGCAGCATTA
ATGGGGATGAGGAGATGTGTATAAAGACCAACAATCCAATCCATTATCAA
ATCTTAACACAGATACAAGAAGTTTTGGAAAACAATCAAATGGCTTTCAT
GCAAAGAAATACACAATCACCAACAATCCAATCCATTATCAAATCTTAAC
ACAGATACAAGAAGTTTTGGAAAACAATCAAATGGCTTTCATGCAAAGAA
ATACACAATCACCAACATCGATAGCTTCGAGTCCAGGCAATGTTTTTCAT
CCAATGGTTGGTATTCATCATGACAGCACAGATGAAGATAATTCATAGAC
CAACATCGATAGCTTCGAGTCCAGGCAATGTTTTTCATCCAATGGTTGGT
ATTCATCATGACAGCACAGATGAAGATAATTCATAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000211_pilon | genome | sc0000211_pilon:78493..86673 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1144-1230:8095 |
| Aaloc | 1051-1140:7756 |
| Aaloc | 853-1050:6970 |
| Aaloc | 640-849:6332 |
| Aaloc | 496-636:5757 |
| Aaloc | 331-492:4722 |
| Aaloc | 142-330:3655 |
| Aaloc | 76-141:3004 |
| Aaloc | 13-72:1 |
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