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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000094_pilon:1233727..1235667- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_042435 ID=XLOC_042435|Name=XLOC_042435|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1941bp|location=Sequence derived from alignment at sc0000094_pilon:1233727..1235667- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGTTCTGGCACCACCCCCGGATTTTAATTTACTACTTTCAACAGATCG
TATCTTGAAATTTGAGCCACTATTAAAAGATACCAAACTCTTTGGAGATA
AAGATACTGAAGTTAACGAAGGAGGAGATAACACCTCTGAACGTTCTGGT
AAATGTACCACATCAACTGAATATCCTGTAGAATCTAACAAGGATTCTAC
TGAAAGTGAAAGTAAGAATGGAAATACTGAGAAAGTACAACTGTTACCTC
AGAAAACTATAAAAGAGCGAAACGAATGCATATATCCGGAGGAAAATCAA
CAAGATTTTGAAAATCAATCTATCAGCGTTGGGGACTCTAAAGCTACAGT
GAATAAACAATCAAAAGGTGTGTTTGATCGAATTAGGAGTGAGGATAAAT
CTTCCAAAACCGTTAACCAGGGGGTGGTCCCTTCAATAGAATCATCTTCT
AAAAGTGATACAAACTCTGATCGGATCAAGAGGAAAATTAGTAACAATCT
AATACGTATTGACGATAGTTGTAAGGAACTTCAGAACACAATTTTAAGTC
AAAATCAAGACATTATTTGTGAAAGTGAGGAGAAGAACGAATCTTTTGGG
CGAGATCAAATTAGCGGCGTTGGCGTAGAGACTACCCCTCACCAGGACGA
TAACCTTCAAAGCCAGTCAAAAGAGAAAACAAAACGTATCATGCTCAAAG
ATACTAGCCAGGATACTATAAAACCACCAGCGATTCAACTTCAAAATAGT
TTAGATTTTGAAGATATTCAACCTCGGAAAAGATGCAGCCCTACAATGGT
GTCGAAAGATAAACCAATGAAATTTTATTCAAGATACAGTAGTAGTCAGG
AAAGCCTGGGTTCTAGAAATTCATCCATGAGTAGTATTGGGTACGAAATT
AAACGAAACTCAAGTCCTGAGGTTTTATCCATTGAAAAGACTAGTAGCGG
ATCACCTCAATTCTTATCGAAGAGTATGACGAATTTGAGCTACCGTAAAA
TGCTCAGCGAGGATGAAAATCATCATTCGCGTAAAAGACTTTCCAACTTT
TTTTCATCCCGCAATAGCATTCACGAGGGTGACCATAACAATGGATTACG
TACTGAAAGTCATTGGCCTAAACCACGCACGCCATCCCTGTTTCGACGAT
TCAGTATGAAAACACCACAGAGCACAGAGCATGCGCAGAGCTATATAAAT
GTAATCGTGCCTGAGGTTAATATATTAGATGATTCCGAGAGTTCGACAAA
TAATGGCGGAAGAACTTCAGGGAAAGGTATATTTCGAAATCTTTCATTCC
GGTCGGCTACCAGATTGAATTTAGAAAATCTGCAAGAAGATGCAGTGCAT
TCGTTGAAGCCACCACCACCACAAGCGAAAAGTTTTCCTGGGTTAAAATC
ACCTTTCTCTCGCTCCAAGTTCGAACGCAATACGGCCGAAATGCGAAAGA
GAGTTTATGATGAAATGTTAAAGAGTATTCAAGATGGCGACTGCAAGAGA
TTGAAATTATTGTTAAAACGCCGGCGAACAGATATAAACACTTTGGAACA
TAACCATTCTTTGATTCATGAAGCAGCTTATAAGGGATGTATGAAATGCG
TGAAAGCTTTAATCAAGTCAGGCTGGTCTGTAAACTTATCTGACGAGGCA
GGTTGGAAACCAATACACTCAGCTGTTTTTGGGGAAGACTTAGAGACGGT
GAAATGTCTTTTACAGAAAGACGTCGATGTCAACATCATAACGATTGACG
GATACACGCCGTTACATTTCGCCATTTATAACGACGATTTATATACGACG
TATGAGTTGATTCAACATGGCGCTGATCCACAGTTTCAAAGTAAACATGA
AATCGCAACTCCATTCCAATTGGCTATCAACCTTAAAAGGACTACTATAC
TAGACTATTTGTTGATGTTGGCTTGCTTTCGAAGTGTATAG Coding sequence (CDS) from alignment at sc0000094_pilon:1233727..1235667- >XLOC_042435 ID=XLOC_042435|Name=XLOC_042435|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3882bp|location=Sequence derived from alignment at sc0000094_pilon:1233727..1235667- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGTTCTGGCACCACCCCCGGATTTTAATTTACTACTTTCAACAGATCG
TATCTTGAAATTTGAGCCACTATTAAAAGATACCAAACTCTTTGGAGATA
AAGATACTGAAGTTAACGAAGGAGGAGATAACACCTCTGAACGTTCTGGT
AAATGTACCACATCAACTGAATATCCTGTAGAATCTAACAAGGATTCTAC
TGAAAGTGAAAGTAAGAATGGAAATACTGAGAAAGTACAACTGTTACCTC
AGAAAACTATAAAAGAGCGAAACGAATGCATATATCCGGAGGAAAATCAA
CAAGATTTTGAAAATCAATCTATCAGCGTTGGGGACTCTAAAGCTACAGT
GAATAAACAATCAAAAGGTGTGTTTGATCGAATTAGGAGTGAGGATAAAT
CTTCCAAAACCGTTAACCAGGGGGTGGTCCCTTCAATAGAATCATCTTCT
AAAAGTGATACAAACTCTGATCGGATCAAGAGGAAAATTAGTAACAATCT
AATACGTATTGACGATAGTTGTAAGGAACTTCAGAACACAATTTTAAGTC
AAAATCAAGACATTATTTGTGAAAGTGAGGAGAAGAACGAATCTTTTGGG
CGAGATCAAATTAGCGGCGTTGGCGTAGAGACTACCCCTCACCAGGACGA
TAACCTTCAAAGCCAGTCAAAAGAGAAAACAAAACGTATCATGCTCAAAG
ATACTAGCCAGGATACTATAAAACCACCAGCGATTCAACTTCAAAATAGT
TTAGATTTTGAAGATATTCAACCTCGGAAAAGATGCAGCCCTACAATGGT
GTCGAAAGATAAACCAATGAAATTTTATTCAAGATACAGTAGTAGTCAGG
AAAGCCTGGGTTCTAGAAATTCATCCATGAGTAGTATTGGGTACGAAATT
AAACGAAACTCAAGTCCTGAGGTTTTATCCATTGAAAAGACTAGTAGCGG
ATCACCTCAATTCTTATCGAAGAGTATGACGAATTTGAGCTACCGTAAAA
TGCTCAGCGAGGATGAAAATCATCATTCGCGTAAAAGACTTTCCAACTTT
TTTTCATCCCGCAATAGCATTCACGAGGGTGACCATAACAATGGATTACG
TACTGAAAGTCATTGGCCTAAACCACGCACGCCATCCCTGTTTCGACGAT
TCAGTATGAAAACACCACAGAGCACAGAGCATGCGCAGAGCTATATAAAT
GTAATCGTGCCTGAGGTTAATATATTAGATGATTCCGAGAGTTCGACAAA
TAATGGCGGAAGAACTTCAGGGAAAGGTATATTTCGAAATCTTTCATTCC
GGTCGGCTACCAGATTGAATTTAGAAAATCTGCAAGAAGATGCAGTGCAT
TCGTTGAAGCCACCACCACCACAAGCGAAAAGTTTTCCTGGGTTAAAATC
ACCTTTCTCTCGCTCCAAGTTCGAACGCAATACGGCCGAAATGCGAAAGA
GAGTTTATGATGAAATGTTAAAGAGTATTCAAGATGGCGACTGCAAGAGA
TTGAAATTATTGTTAAAACGCCGGCGAACAGATATAAACACTTTGGAACA
TAACCATTCTTTGATTCATGAAGCAGCTTATAAGGGATGTATGAAATGCG
TGAAAGCTTTAATCAAGTCAGGCTGGTCTGTAAACTTATCTGACGAGGCA
GGTTGGAAACCAATACACTCAGCTGTTTTTGGGGAAGACTTAGAGACGGT
GAAATGTCTTTTACAGAAAGACGTCGATGTCAACATCATAACGATTGACG
GATACACGCCGTTACATTTCGCCATTTATAACGACGATTTATATACGACG
TATGAGTTGATTCAACATGGCGCTGATCCACAGTTTCAAAGTAAACATGA
AATCGCAACTCCATTCCAATTGGCTATCAACCTTAAAAGGACTACTATAC
TAGACTATTTGTTGATGTTGGCTTGCTTTCGAAGTGTATAGATGGTTCTG
GCACCACCCCCGGATTTTAATTTACTACTTTCAACAGATCGTATCTTGAA
ATTTGAGCCACTATTAAAAGATACCAAACTCTTTGGAGATAAAGATACTG
AAGTTAACGAAGGAGGAGATAACACCTCTGAACGTTCTGGTAAATGTACC
ACATCAACTGAATATCCTGTAGAATCTAACAAGGATTCTACTGAAAGTGA
AAGTAAGAATGGAAATACTGAGAAAGTACAACTGTTACCTCAGAAAACTA
TAAAAGAGCGAAACGAATGCATATATCCGGAGGAAAATCAACAAGATTTT
GAAAATCAATCTATCAGCGTTGGGGACTCTAAAGCTACAGTGAATAAACA
ATCAAAAGGTGTGTTTGATCGAATTAGGAGTGAGGATAAATCTTCCAAAA
CCGTTAACCAGGGGGTGGTCCCTTCAATAGAATCATCTTCTAAAAGTGAT
ACAAACTCTGATCGGATCAAGAGGAAAATTAGTAACAATCTAATACGTAT
TGACGATAGTTGTAAGGAACTTCAGAACACAATTTTAAGTCAAAATCAAG
ACATTATTTGTGAAAGTGAGGAGAAGAACGAATCTTTTGGGCGAGATCAA
ATTAGCGGCGTTGGCGTAGAGACTACCCCTCACCAGGACGATAACCTTCA
AAGCCAGTCAAAAGAGAAAACAAAACGTATCATGCTCAAAGATACTAGCC
AGGATACTATAAAACCACCAGCGATTCAACTTCAAAATAGTTTAGATTTT
GAAGATATTCAACCTCGGAAAAGATGCAGCCCTACAATGGTGTCGAAAGA
TAAACCAATGAAATTTTATTCAAGATACAGTAGTAGTCAGGAAAGCCTGG
GTTCTAGAAATTCATCCATGAGTAGTATTGGGTACGAAATTAAACGAAAC
TCAAGTCCTGAGGTTTTATCCATTGAAAAGACTAGTAGCGGATCACCTCA
ATTCTTATCGAAGAGTATGACGAATTTGAGCTACCGTAAAATGCTCAGCG
AGGATGAAAATCATCATTCGCGTAAAAGACTTTCCAACTTTTTTTCATCC
CGCAATAGCATTCACGAGGGTGACCATAACAATGGATTACGTACTGAAAG
TCATTGGCCTAAACCACGCACGCCATCCCTGTTTCGACGATTCAGTATGA
AAACACCACAGAGCACAGAGCATGCGCAGAGCTATATAAATGTAATCGTG
CCTGAGGTTAATATATTAGATGATTCCGAGAGTTCGACAAATAATGGCGG
AAGAACTTCAGGGAAAGGTATATTTCGAAATCTTTCATTCCGGTCGGCTA
CCAGATTGAATTTAGAAAATCTGCAAGAAGATGCAGTGCATTCGTTGAAG
CCACCACCACCACAAGCGAAAAGTTTTCCTGGGTTAAAATCACCTTTCTC
TCGCTCCAAGTTCGAACGCAATACGGCCGAAATGCGAAAGAGAGTTTATG
ATGAAATGTTAAAGAGTATTCAAGATGGCGACTGCAAGAGATTGAAATTA
TTGTTAAAACGCCGGCGAACAGATATAAACACTTTGGAACATAACCATTC
TTTGATTCATGAAGCAGCTTATAAGGGATGTATGAAATGCGTGAAAGCTT
TAATCAAGTCAGGCTGGTCTGTAAACTTATCTGACGAGGCAGGTTGGAAA
CCAATACACTCAGCTGTTTTTGGGGAAGACTTAGAGACGGTGAAATGTCT
TTTACAGAAAGACGTCGATGTCAACATCATAACGATTGACGGATACACGC
CGTTACATTTCGCCATTTATAACGACGATTTATATACGACGTATGAGTTG
ATTCAACATGGCGCTGATCCACAGTTTCAAAGTAAACATGAAATCGCAAC
TCCATTCCAATTGGCTATCAACCTTAAAAGGACTACTATACTAGACTATT
TGTTGATGTTGGCTTGCTTTCGAAGTGTATAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000094_pilon | genome | sc0000094_pilon:1233727..1235667 - |
Properties
| Property Name | Value |
|---|
| Aaloc | 181-1944:1765 |
| Aaloc | 1-177:1942 |
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