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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000001_pilon:996183..998606- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_042399 ID=XLOC_042399|Name=XLOC_042399|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2424bp|location=Sequence derived from alignment at sc0000001_pilon:996183..998606- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCTGGTACAAGATACTTGCGTACTCTTTTCTATTGTTCTATTGGAGC
ACTTCTTGGTCTCATTTCACCGTCATTGTATTATGGCTTAATACCAAGAT
GTCAACAAAACACAGAGTCTACAATGCAACGGAGAAATATTAAAGATATA
GCAGCCACCTCAAAAAATGCTGCTTTACCGAAAAAGAAGTTATTGTTTGC
TGGTGTTATGACTGCTGAGAAGTTTTTAGATACGCGTGCCAAAGCTGTTT
ATGAAACATGGGGTAAAATAATGCCAGGAAAAATGATGTTTTTTGCCAGT
AGTAGTTCTCATAGGGATGACCTTCCAGTAGTTTCCCTGACCGGTGTTGA
TGACTCATACCCACCGCAACGAAAGTCGATGATGATGTTAAAATACATGC
ATGATAATTTCATTGATGATTTCGAATGGTTTTTACGCGCGGACGATGAT
GTGTACATACGGACGGACAAAATGGAGCAGTTTCTACGCCAATTAAACAG
CAGTGATGATCTGTATATAGGTCAAGCTGGTGTTGGTATTCAAAAAGAGA
AAGGAAAACTGGGTTTAGGGCTAGGTGATAATTTTTGTATGGGTGGACCA
GGGGTGATTATTAGTGCGAGTACTTTGAGGAAAGTGGTTCCCTATTTGGA
GCATTGTTTGCAGAATTTGTACACAACTCATGAAGATGTGGAAGTTGGAA
GATGTATCAAGAAATTTGTTGGAATTTCTTGTACATGGGCTTTCGAGGTA
AGTTTGAGCTATTCTTCTTTCTATTTTTCACCAGTATTATAATGATCGTT
GTCTTTTGACACCACGTCAATTTTATAATAGCTGTAGCTGATTCGTTGCA
GGTGACGCATTGGGTGAAAAAAATACAGAATATTTTATATTTATATAAAT
TTTGATATTTCTGAAGTCATTTTAGTGGTGCATTTTTTGAATTAATTTGG
ATTGATGAACTCCTGAGAATTTGATTTGATTATGTTTACAGCAAGCATAG
AATTTCTGTACTATGTATTCTCCGACTCGCATTTGACATTATTTGAAATT
TTCTTATTACAACTTGCTTTGCTTCTTTTTTCTGATAACCGATATCTTGA
CACCTTGTTTAATTCTTTACTTGCTTTTTCTTAATTTCTTACAGATGCAG
TCACTGTTCTATCACAATCGGACAGGTGCCAAAGCTTACACCACAAACTT
AGATACCAAGGCTGTCCGTAATGCAGTCACTCTACATCCGTTGAAAAGAC
CGGAATTCATGTACCGGTTACACACGCATTTCATGGAGCTGAAGATTCAA
CAGACTTCTTATGATGTTGTGGTGCATCAAAGGCAACTCGATATTGTAGA
GAAACTTTTGACAAAAGGTTAGTATTATTACAACTTTTTATTGAGAACTT
CGTAACTCCTATGCTGACACACTACGCTCACAGGGAGCGCTTCACCAGAA
GAATTTTCTGATTTTCAAGTGACAATTAGTCAAGCTTTGCATTTCTTTCT
GTTACTTAGATAACAGAAAGTGACAAGTCTCTTCTGACTCAAAATATTCA
CCGCACAACTTGTTAAATGATCCATAAGAACATTTGTTGTTTTCTTCCAG
ATCTTGACAAGCAGTCTGATGACAAATTGGCTCGTCTCAAAGATCGTAAA
ATGTTTAACCAGAAGATGTTACCTAAAGAAGTACCAGACTGGGAGATGTT
TACTCCTAGAAAAGTGTATTCCTACCAAACTAATGCACCGGAGATTGGAA
TGTTAAATCCAGTGAAAGATGGACTGAATCATGTCCTTGGTCAAACCATG
TCCATTATCAATAAAGAGGCTCGTAAAGTCTTACATCGCACGTTAGAGTT
TAAGAGGTTAAACCATGGTTATAAGAGATATCATCCTAGATACGGAATGC
AGTATATGTTAGATTTGTTGATGAAATATCATCGACATGTCGGTTATAAT
AGACGTCGAATGACGGTTCATGTCCGTCATCACGCTTATTTGCAGCAACC
TTTTACTAGTTTAATGTATGCGGAAGATGAGCAAACACGTGTTCAGGAAC
CAATCAATTTCTTGCTTCCACTAGCTGGAAGGTTGGTCCAATTTAAGAGG
TTTATGGGGAACTTTGAACGAATTTGTTTACATCAAGAGGAAAAGGCCTC
GCTTACTATCCTTTATTTCCCTGATGAGGGTCATAATTCAACCGAACATA
AAATCATTTTCGAGTCTTTGAAAGAAAAATACACACGTGCTAATCTCAAG
TGGATCAATATGGAAGGGCGCTTCTCAAGGGCGCTTGCTTTGACGGTAGG
CGTGGCTCAATTTGATAAAACTTCATTGTTGTTTTTCTGCGATGTTGATT
TAGAGTTTGATAGCGCTTTTATGGAGCGTTGCCGATCAAATACTATTTTA
GATCAGCAGATTTATTATCCGATC Coding sequence (CDS) from alignment at sc0000001_pilon:996183..998606- >XLOC_042399 ID=XLOC_042399|Name=XLOC_042399|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3588bp|location=Sequence derived from alignment at sc0000001_pilon:996183..998606- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCTGGTACAAGATACTTGCGTACTCTTTTCTATTGTTCTATTGGAGC
ACTTCTTGGTCTCATTTCACCGTCATTGTATTATGGCTTAATACCAAGAT
GTCAACAAAACACAGAGTCTACAATGCAACGGAGAAATATTAAAGATATA
GCAGCCACCTCAAAAAATGCTGCTTTACCGAAAAAGAAGTTATTGTTTGC
TGGTGTTATGACTGCTGAGAAGTTTTTAGATACGCGTGCCAAAGCTGTTT
ATGAAACATGGGGTAAAATAATGCCAGGAAAAATGATGTTTTTTGCCAGT
AGTAGTTCTCATAGGGATGACCTTCCAGTAGTTTCCCTGACCGGTGTTGA
TGACTCATACCCACCGCAACGAAAGTCGATGATGATGTTAAAATACATGC
ATGATAATTTCATTGATGATTTCGAATGGTTTTTACGCGCGGACGATGAT
GTGTACATACGGACGGACAAAATGGAGCAGTTTCTACGCCAATTAAACAG
CAGTGATGATCTGTATATAGGTCAAGCTGGTGTTGGTATTCAAAAAGAGA
AAGGAAAACTGGGTTTAGGGCTAGGTGATAATTTTTGTATGGGTGGACCA
GGGGTGATTATTAGTGCGAGTACTTTGAGGAAAGTGGTTCCCTATTTGGA
GCATTGTTTGCAGAATTTGTACACAACTCATGAAGATGTGGAAGTTGGAA
GATGTATCAAGAAATTTGTTGGAATTTCTTGTACATGGGCTTTCGAGATG
GCTGGTACAAGATACTTGCGTACTCTTTTCTATTGTTCTATTGGAGCACT
TCTTGGTCTCATTTCACCGTCATTGTATTATGGCTTAATACCAAGATGTC
AACAAAACACAGAGTCTACAATGCAACGGAGAAATATTAAAGATATAGCA
GCCACCTCAAAAAATGCTGCTTTACCGAAAAAGAAGTTATTGTTTGCTGG
TGTTATGACTGCTGAGAAGTTTTTAGATACGCGTGCCAAAGCTGTTTATG
AAACATGGGGTAAAATAATGCCAGGAAAAATGATGTTTTTTGCCAGTAGT
AGTTCTCATAGGGATGACCTTCCAGTAGTTTCCCTGACCGGTGTTGATGA
CTCATACCCACCGCAACGAAAGTCGATGATGATGTTAAAATACATGCATG
ATAATTTCATTGATGATTTCGAATGGTTTTTACGCGCGGACGATGATGTG
TACATACGGACGGACAAAATGGAGCAGTTTCTACGCCAATTAAACAGCAG
TGATGATCTGTATATAGGTCAAGCTGGTGTTGGTATTCAAAAAGAGAAAG
GAAAACTGGGTTTAGGGCTAGGTGATAATTTTTGTATGGGTGGACCAGGG
GTGATTATTAGTGCGAGTACTTTGAGGAAAGTGGTTCCCTATTTGGAGCA
TTGTTTGCAGAATTTGTACACAACTCATGAAGATGTGGAAGTTGGAAGAT
GTATCAAGAAATTTGTTGGAATTTCTTGTACATGGGCTTTCGAGATGCAG
TCACTGTTCTATCACAATCGGACAGGTGCCAAAGCTTACACCACAAACTT
AGATACCAAGGCTGTCCGTAATGCAGTCACTCTACATCCGTTGAAAAGAC
CGGAATTCATGTACCGGTTACACACGCATTTCATGGAGCTGAAGATTCAA
CAGACTTCTTATGATGTTGTGGTGCATCAAAGGCAACTCGATATTGTAGA
GAAACTTTTGACAAAAGATGCAGTCACTGTTCTATCACAATCGGACAGGT
GCCAAAGCTTACACCACAAACTTAGATACCAAGGCTGTCCGTAATGCAGT
CACTCTACATCCGTTGAAAAGACCGGAATTCATGTACCGGTTACACACGC
ATTTCATGGAGCTGAAGATTCAACAGACTTCTTATGATGTTGTGGTGCAT
CAAAGGCAACTCGATATTGTAGAGAAACTTTTGACAAAAGATCTTGACAA
GCAGTCTGATGACAAATTGGCTCGTCTCAAAGATCGTAAAATGTTTAACC
AGAAGATGTTACCTAAAGAAGTACCAGACTGGGAGATGTTTACTCCTAGA
AAAGTGTATTCCTACCAAACTAATGCACCGGAGATTGGAATGTTAAATCC
AGTGAAAGATGGACTGAATCATGTCCTTGGTCAAACCATGTCCATTATCA
ATAAAGAGGCTCGTAAAGTCTTACATCGCACGTTAGAGTTTAAGAGGTTA
AACCATGGTTATAAGAGATATCATCCTAGATACGGAATGCAGTATATGTT
AGATTTGTTGATGAAATATCATCGACATGTCGGTTATAATAGACGTCGAA
TGACGGTTCATGTCCGTCATCACGCTTATTTGCAGCAACCTTTTACTAGT
TTAATGTATGCGGAAGATGAGCAAACACGTGTTCAGGAACCAATCAATTT
CTTGCTTCCACTAGCTGGAAGGTTGGTCCAATTTAAGAGGTTTATGGGGA
ACTTTGAACGAATTTGTTTACATCAAGAGGAAAAGGCCTCGCTTACTATC
CTTTATTTCCCTGATGAGGGTCATAATTCAACCGAACATAAAATCATTTT
CGAGTCTTTGAAAGAAAAATACACACGTGCTAATCTCAAGTGGATCAATA
TGGAAGGGCGCTTCTCAAGGGCGCTTGCTTTGACGGTAGGCGTGGCTCAA
TTTGATAAAACTTCATTGTTGTTTTTCTGCGATGTTGATTTAGAGTTTGA
TAGCGCTTTTATGGAGCGTTGCCGATCAAATACTATTTTAGATCAGCAGA
TTTATTATCCGATCATCTTGACAAGCAGTCTGATGACAAATTGGCTCGTC
TCAAAGATCGTAAAATGTTTAACCAGAAGATGTTACCTAAAGAAGTACCA
GACTGGGAGATGTTTACTCCTAGAAAAGTGTATTCCTACCAAACTAATGC
ACCGGAGATTGGAATGTTAAATCCAGTGAAAGATGGACTGAATCATGTCC
TTGGTCAAACCATGTCCATTATCAATAAAGAGGCTCGTAAAGTCTTACAT
CGCACGTTAGAGTTTAAGAGGTTAAACCATGGTTATAAGAGATATCATCC
TAGATACGGAATGCAGTATATGTTAGATTTGTTGATGAAATATCATCGAC
ATGTCGGTTATAATAGACGTCGAATGACGGTTCATGTCCGTCATCACGCT
TATTTGCAGCAACCTTTTACTAGTTTAATGTATGCGGAAGATGAGCAAAC
ACGTGTTCAGGAACCAATCAATTTCTTGCTTCCACTAGCTGGAAGGTTGG
TCCAATTTAAGAGGTTTATGGGGAACTTTGAACGAATTTGTTTACATCAA
GAGGAAAAGGCCTCGCTTACTATCCTTTATTTCCCTGATGAGGGTCATAA
TTCAACCGAACATAAAATCATTTTCGAGTCTTTGAAAGAAAAATACACAC
GTGCTAATCTCAAGTGGATCAATATGGAAGGGCGCTTCTCAAGGGCGCTT
GCTTTGACGGTAGGCGTGGCTCAATTTGATAAAACTTCATTGTTGTTTTT
CTGCGATGTTGATTTAGAGTTTGATAGCGCTTTTATGGAGCGTTGCCGAT
CAAATACTATTTTAGATCAGCAGATTTATTATCCGATC
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001_pilon | genome | sc0000001_pilon:996183..998606 - |
Properties
| Property Name | Value |
|---|
| Aaloc | 973-1794:823 |
| Aaloc | 748-969:1281 |
| Aaloc | 1-747:2425 |
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