XLOC_042346 (mRNA) -

Overview


Name	XLOC_042346
Unique Name	XLOC_042346
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000238_pilon:221652..225547-
coding sequence from alignment at sc0000238_pilon:221652..225547-

mRNA from alignment at sc0000238_pilon:221652..225547-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_042346 ID=XLOC_042346|Name=XLOC_042346|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3896bp|location=Sequence derived from alignment at sc0000238_pilon:221652..225547- (Clytia hemisphaerica_ch_hm2_pilon)
TTTTTTCTTCATTAGATTGATGAGGGTATTTTGTGGACGCTTGATGGAAA
GTATGATAATGTATCACTTTCTGAACAACTTGCTCAAAATTATGGTGAAG
ATGTTTTGAATGGCAAAGATCATCAAGTAATTTCTTGTTTGGCAAGAGCT
AACGAGTTACTGAGTACGTAGTATATCAATGTCATGATAGTGTAAAGGTC
TTGTTAGACGATAACATTCGGTAACATTTTTGTGTAACATTTTCTAAAAA
TAGCAAATGTTGTACAAAGTGTTACCGTGTAACATCGATTAACATTCAGA
AACATTCAAATGTTAACGAATGTTACGCGCAGATAGCAAATCAAAAAAAA
ATGATTTGCTCTACATGGTTAACATTTTGAATCAAAGGATGCCGCCATTT
AAAGGGAATTTAAAAGGATACTTCAAGTGCGCACGTGTTTTTTCGCCGAT
TTTTCTCTCTTTTTCTCTCTTTTTTAATAAAAAAAATCAAATGTTACACA
CAAAATGTTTGCGTGTAACATATGTTAACATTTCTTGAGCACATTTTTGA
AATCTTCTATTTTTAGAAATGTTAGCAAATGTTACACAAAAATGTTACTG
TCTAACAAGACCTTAAGCTCTTCTTTTGAAAATTATGCTTCTAGTAATAT
CATTATGTATCAAGTTTGTTTGATTTGATTTTGAAATAAGCTGTGCTTTA
AGCAAGAAAAATCTAATTGAATCTGAAGCAGGATGATATCGACAAACAAA
TTTACATCAAATCCTTTTTTATCAATTTCAAATTCAGTCGATGAGAAGAA
GTACGAGTTTCATTTGCTGGAAATTCAACGAGCTTTGGATGAAGAAGGGA
GCTTCCGTGGAGAAGGAGAAAGCAGAACTTTCAGAGGTTCGTAATCCGAA
GGCTTCCACCTTCTCCGTTTTTTCGTTGTATATTTTCTAAAGTCAAATGC
TATATTTTTTACTCGATGATTAATATTATTGCATTTCTCCTAGCTATTGG
CTTTATCTTCTAATGGTGTTTATAATCTTCTCCTCTTCTTTTTTGTCTTT
TCTTTTAGTTGTGCTGAATTCTAGCTTCGAATCTCTCGCACTAACTAAAA
GCTCTCTCATTTCACTCTAAAGTTAAGACTGGGGTCAGTTAAAAATCGAG
CTAGCCTATGTCCTGCTGTGTCTCATAAAAAGGTTGAAACTTTTGGCAGT
TAGAGAGACAGTGCTGTGTCTCAAAATGATAGCCAGAGCTGTAGATAATG
ATTAATTTCAATATCAATCTTTGTTCATAGGAAATATGGATTACACAGAA
GATCACATCAAAATCTTTTCTTCACGTGAATTGTCAACTGGTGAAATGAA
GTATGATTTCAAAAACCTTCTCATCCAACCTGAATACCATTTACTTGATT
TCGAAGAGAAATTCAATGGAAGTTTGAATGAATTTTGGGGACAGTGTGAC
GATGAGAAAATCAACGAAGGTGAGCGTGAACACACTGAATCATTTTACGG
TGGCATGTATTGGGATCCCTATAGATGTGATATGAGAGAACGAAAACATT
ATCAAACTTACCGAGAAAAATACACCAAACGGGTGAGAAAATATTCAAAG
TATCTATTGTTTGCTTTCCCAAAATCTCAAAAAGCTCACATCCTTTCGAA
ATGTGGAATCAAAGAATCATTTAAGTTCCTCGTTGAAGAGTATGAAGCTG
GCTCCTCAATGTTCAAAGAATATTCCAACACCTTTCTAGAGGAAGTTCCC
ATTGAGGAGTTTTTCGAAAGTTGTGAAACGTTGGAGGAGGTAATTGATGA
AAGATTGAATGTTACCATGGTTATGCAGTTTCTTTTGAAAGTCGGCGACG
TTGAGTTAACAAAATCTTTTATCGATAAGGTTATGGGAGCTGAAAAATAT
TCAGGTAAATATTACGGCATCGAAGAAGAAGAAATGATAAAACCTTTAAT
TAATTTGTTGAAGGCTTTTCCATGGCAACCCCTTAGTGAGTCGGTTGAGA
CAGTTATTAGTCATTGTCCAAAAGAACAGTATGAATTTTGGCTAGAGTGT
GTTTTCATCTACCGGTATCACTGAGATTGCACATAAAGTTCTTGCGATCA
GTTTGCAGAAAATGATGGATGATAAAAGATTCCTTCCGTTATGGTTGAAA
ATATTCAAGCTTGTTTTTGAAAACGAAGAATTTGGTAATCGTTGGTGGGA
TAAGATCATCTCCTGTGAAGATCTTGTCAACAAAGAATTCGATATCATTT
CTCATATTTGTTTGAATCTACCCATTGAAACAAACCCAGTAAAGTTTCCT
TCTCTTTTAACCGCTTTGGTGACTTCAATGACAACCGAGGACAACCCATA
TTGTGTTAAGAGGTATGCGGAAAAGTTACTTGATGTTATCGCCAAAATCA
AAGGGAGTGAATTTTTCGAAAGTGCTCTCACTAATTTAAGTAATCAGCTT
GTTTCTGAAGGTCGTATCTCAACCTTGATAAAACTAGCAGAACTCTGTGC
ACCGAAAGATCAACATTCTCGCCACAATGAAGAAGTTGTTAAACTATTTC
TGGAAGGGTGTTTTGATTGGTTATCAAAAGCAACTTTCGAAAGGAAACAT
ATACAAAGTGTTGTCGATATAGTTGTCCTTTTGAACCAGCACAAACAATT
GTATAATGGTCCTATGATTGAGAAATACATAGAGTCGTGTCAGAAAATAT
CCGATCCTGATTTTATTTGTAATGTTGTCAACAAGTTATTTACCATGTCA
TGTTCGTTTTACTTTCTCAAGCCGTTACTTCAATCACTTGCCAATTTGTT
AAGCACCAAAACATTCACCGATCACAAAGCAATGTCTTCAACTATCAACC
ACATGTTCATCCAAGGACCTGAGTTTGATCATCTATTGACTCTTCTGTTG
ACTAACGAAAAAATTCTCTCTTCCATTGATCTTCTCAATGAAATTCTACA
TTCACTTCTCAGCAAGGACGACAACATCGAACAATTGAAAACCAGTATCA
ATTTCCATGGATTGTTGACCAGCTTCGTCTCTCTAATGCAACAACCGAAT
AACACAAACAAAGAATTTTCATCTCTCCGTCTGGTTCATGAATTTCTACT
CAGCTTAAGCGACGAATCTCCTTTACATCAACTGGTTCCTCAAATAATTG
ACACAAGTTTGCTGAAAAACGATTTCCCTAAGTGTATACAATATCTATCC
AAACTTTCCATCCGTGAAACTGAGACATTCAAAACCTTCCTCACAACGAC
AATTCATGCTTTGGGAATCTTCCTCCGCCGATATAATACAATCATCGATG
CTGAATACCAACTTATTTATGACTTCATAAAACTATTGCTTAAGAACGAC
CACTTCACGCCCTTTGCTTTACAGCTTGCTTCGTTGAAAGACCTTACCAA
CAACGATTATAGAAACTTATATCATAACAATAAAGAAAGGTCCGTTCTGG
AAAATCTTCTGGCTGCTTTCAAAAATCACCGCAACACCGATTTCTTTGCC
GCCCTCCAGCTCTCTCGTTCAAGGAGTTTGCAAATGTTGAAAGATTATGG
TCCCCCTAAATTCACCTGGGAGCAACCTGATGTGAATATCGATCACGCCA
AAGTTCAGGAGTTTCTCCGAAGTAAACGCGAAACAATCGTATTGCGAACT
TTCCGATCCTATAAAAGCGCTAATAACTGGATCCAAAAGCATAGTGGATA
CAACAAAGACAGGAAATACAGTTTTACCGCCCAAATCCGTACCGCCAACA
ACGGGTGGAAGAGTTTAGTGGATGTTAAGAAAGGGCGTCATATTCACGAA
GAGAGAGAGGAAAGATTTCAGAATCTTATGAATGAATTGGAAGAAATTCT
TGAAAGTTTGAAAATATCAAACGTTGAAAATCCATTAGCTGCGTAA

Coding sequence (CDS) from alignment at sc0000238_pilon:221652..225547-

>XLOC_042346 ID=XLOC_042346|Name=XLOC_042346|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5756bp|location=Sequence derived from alignment at sc0000238_pilon:221652..225547- (Clytia hemisphaerica_ch_hm2_pilon)
TTTTTTCTTCATTAGATTGATGAGGGTATTTTGTGGACGCTTGATGGAAA
GTATGATAATGTATCACTTTCTGAACAACTTGCTCAAAATTATGGTGAAG
ATGTTTTGAATGGCAAAGATCATCAAGTAATTTCTTGTTTGGCAAGAGCT
AACGAGTTACTGATTTTTTCTTCATTAGATTGATGAGGGTATTTTGTGGA
CGCTTGATGGAAAGTATGATAATGTATCACTTTCTGAACAACTTGCTCAA
AATTATGGTGAAGATGTTTTGAATGGCAAAGATCATCAAGTAATTTCTTG
TTTGGCAAGAGCTAACGAGTTACTGATCGATGAGAAGAAGTACGAGTTTC
ATTTGCTGGAAATTCAACGAGCTTTGGATGAAGAAGGGAGCTTCCGTGGA
GAAGGAGAAAGCAGAACTTTCAGAGTCGATGAGAAGAAGTACGAGTTTCA
TTTGCTGGAAATTCAACGAGCTTTGGATGAAGAAGGGAGCTTCCGTGGAG
AAGGAGAAAGCAGAACTTTCAGAGGAAATATGGATTACACAGAAGATCAC
ATCAAAATCTTTTCTTCACGTGAATTGTCAACTGGTGAAATGAAGTATGA
TTTCAAAAACCTTCTCATCCAACCTGAATACCATTTACTTGATTTCGAAG
AGAAATTCAATGGAAGTTTGAATGAATTTTGGGGACAGTGTGACGATGAG
AAAATCAACGAAGGTGAGCGTGAACACACTGAATCATTTTACGGTGGCAT
GTATTGGGATCCCTATAGATGTGATATGAGAGAACGAAAACATTATCAAA
CTTACCGAGAAAAATACACCAAACGGGTGAGAAAATATTCAAAGTATCTA
TTGTTTGCTTTCCCAAAATCTCAAAAAGCTCACATCCTTTCGAAATGTGG
AATCAAAGAATCATTTAAGTTCCTCGTTGAAGAGTATGAAGCTGGCTCCT
CAATGTTCAAAGAATATTCCAACACCTTTCTAGAGGAAGTTCCCATTGAG
GAGTTTTTCGAAAGTTGTGAAACGTTGGAGGAGGTAATTGATGAAAGATT
GAATGTTACCATGGTTATGCAGTTTCTTTTGAAAGTCGGCGACGTTGAGT
TAACAAAATCTTTTATCGATAAGGTTATGGGAGCTGAAAAATATTCAGGT
AAATATTACGGCATCGAAGAAGAAGAAATGATAAAACCTTTAATTAATTT
GTTGAAGGCTTTTCCATGGCAACCCCTTAGTGAGTCGGTTGAGACAGTTA
TTAGTCATTGTCCAAAAGAACAGTATGAATTTTGGCTAGAGTGTGTTTTC
ATCTACCGGTATCACTGAGATTGCACATAAAGTTCTTGCGATCAGTTTGC
AGAAAATGATGGATGATAAAAGATTCCTTCCGTTATGGTTGAAAATATTC
AAGCTTGTTTTTGAAAACGAAGAATTTGGTAATCGTTGGTGGGATAAGAT
CATCTCCTGTGAAGATCTTGTCAACAAAGAATTCGATATCATTTCTCATA
TTTGTTTGAATCTACCCATTGAAACAAACCCAGTAAAGTTTCCTTCTCTT
TTAACCGCTTTGGTGACTTCAATGACAACCGAGGACAACCCATATTGTGT
TAAGAGGTATGCGGAAAAGTTACTTGATGTTATCGCCAAAATCAAAGGGA
GTGAATTTTTCGAAAGTGCTCTCACTAATTTAAGTAATCAGCTTGTTTCT
GAAGGTCGTATCTCAACCTTGATAAAACTAGCAGAACTCTGTGCACCGAA
AGATCAACATTCTCGCCACAATGAAGAAGTTGTTAAACTATTTCTGGAAG
GGTGTTTTGATTGGTTATCAAAAGCAACTTTCGAAAGGAAACATATACAA
AGTGTTGTCGATATAGTTGTCCTTTTGAACCAGCACAAACAATTGTATAA
TGGTCCTATGATTGAGAAATACATAGAGTCGTGTCAGAAAATATCCGATC
CTGATTTTATTTGTAATGTTGTCAACAAGTTATTTACCATGTCATGTTCG
TTTTACTTTCTCAAGCCGTTACTTCAATCACTTGCCAATTTGTTAAGCAC
CAAAACATTCACCGATCACAAAGCAATGTCTTCAACTATCAACCACATGT
TCATCCAAGGACCTGAGTTTGATCATCTATTGACTCTTCTGTTGACTAAC
GAAAAAATTCTCTCTTCCATTGATCTTCTCAATGAAATTCTACATTCACT
TCTCAGCAAGGACGACAACATCGAACAATTGAAAACCAGTATCAATTTCC
ATGGATTGTTGACCAGCTTCGTCTCTCTAATGCAACAACCGAATAACACA
AACAAAGAATTTTCATCTCTCCGTCTGGTTCATGAATTTCTACTCAGCTT
AAGCGACGAATCTCCTTTACATCAACTGGTTCCTCAAATAATTGACACAA
GTTTGCTGAAAAACGATTTCCCTAAGTGTATACAATATCTATCCAAACTT
TCCATCCGTGAAACTGAGACATTCAAAACCTTCCTCACAACGACAATTCA
TGCTTTGGGAATCTTCCTCCGCCGATATAATACAATCATCGATGCTGAAT
ACCAACTTATTTATGACTTCATAAAACTATTGCTTAAGAACGACCACTTC
ACGCCCTTTGCTTTACAGCTTGCTTCGTTGAAAGACCTTACCAACAACGA
TTATAGAAACTTATATCATAACAATAAAGAAAGGTCCGTTCTGGAAAATC
TTCTGGCTGCTTTCAAAAATCACCGCAACACCGATTTCTTTGCCGCCCTC
CAGCTCTCTCGTTCAAGGAGTTTGCAAATGTTGAAAGATTATGGTCCCCC
TAAATTCACCTGGGAGCAACCTGATGTGAATATCGATCACGCCAAAGTTC
AGGAGTTTCTCCGAAGTAAACGCGAAACAATCGTATTGCGAACTTTCCGA
TCCTATAAAAGCGCTAATAACTGGATCCAAAAGCATAGTGGATACAACAA
AGACAGGAAATACAGTTTTACCGCCCAAATCCGTACCGCCAACAACGGGT
GGAAGAGTTTAGTGGATGTTAAGAAAGGGCGTCATATTCACGAAGAGAGA
GAGGAAAGATTTCAGAATCTTATGAATGAATTGGAAGAAATTCTTGAAAG
TTTGAAAATATCAAACGTTGAAAATCCATTAGCTGCGTAAGAAATATGGA
TTACACAGAAGATCACATCAAAATCTTTTCTTCACGTGAATTGTCAACTG
GTGAAATGAAGTATGATTTCAAAAACCTTCTCATCCAACCTGAATACCAT
TTACTTGATTTCGAAGAGAAATTCAATGGAAGTTTGAATGAATTTTGGGG
ACAGTGTGACGATGAGAAAATCAACGAAGGTGAGCGTGAACACACTGAAT
CATTTTACGGTGGCATGTATTGGGATCCCTATAGATGTGATATGAGAGAA
CGAAAACATTATCAAACTTACCGAGAAAAATACACCAAACGGGTGAGAAA
ATATTCAAAGTATCTATTGTTTGCTTTCCCAAAATCTCAAAAAGCTCACA
TCCTTTCGAAATGTGGAATCAAAGAATCATTTAAGTTCCTCGTTGAAGAG
TATGAAGCTGGCTCCTCAATGTTCAAAGAATATTCCAACACCTTTCTAGA
GGAAGTTCCCATTGAGGAGTTTTTCGAAAGTTGTGAAACGTTGGAGGAGG
TAATTGATGAAAGATTGAATGTTACCATGGTTATGCAGTTTCTTTTGAAA
GTCGGCGACGTTGAGTTAACAAAATCTTTTATCGATAAGGTTATGGGAGC
TGAAAAATATTCAGGTAAATATTACGGCATCGAAGAAGAAGAAATGATAA
AACCTTTAATTAATTTGTTGAAGGCTTTTCCATGGCAACCCCTTAGTGAG
TCGGTTGAGACAGTTATTAGTCATTGTCCAAAAGAACAGTATGAATTTTG
GCTAGAGTGTGTTTTCATCTACCGGTATCACTGAGATTGCACATAAAGTT
CTTGCGATCAGTTTGCAGAAAATGATGGATGATAAAAGATTCCTTCCGTT
ATGGTTGAAAATATTCAAGCTTGTTTTTGAAAACGAAGAATTTGGTAATC
GTTGGTGGGATAAGATCATCTCCTGTGAAGATCTTGTCAACAAAGAATTC
GATATCATTTCTCATATTTGTTTGAATCTACCCATTGAAACAAACCCAGT
AAAGTTTCCTTCTCTTTTAACCGCTTTGGTGACTTCAATGACAACCGAGG
ACAACCCATATTGTGTTAAGAGGTATGCGGAAAAGTTACTTGATGTTATC
GCCAAAATCAAAGGGAGTGAATTTTTCGAAAGTGCTCTCACTAATTTAAG
TAATCAGCTTGTTTCTGAAGGTCGTATCTCAACCTTGATAAAACTAGCAG
AACTCTGTGCACCGAAAGATCAACATTCTCGCCACAATGAAGAAGTTGTT
AAACTATTTCTGGAAGGGTGTTTTGATTGGTTATCAAAAGCAACTTTCGA
AAGGAAACATATACAAAGTGTTGTCGATATAGTTGTCCTTTTGAACCAGC
ACAAACAATTGTATAATGGTCCTATGATTGAGAAATACATAGAGTCGTGT
CAGAAAATATCCGATCCTGATTTTATTTGTAATGTTGTCAACAAGTTATT
TACCATGTCATGTTCGTTTTACTTTCTCAAGCCGTTACTTCAATCACTTG
CCAATTTGTTAAGCACCAAAACATTCACCGATCACAAAGCAATGTCTTCA
ACTATCAACCACATGTTCATCCAAGGACCTGAGTTTGATCATCTATTGAC
TCTTCTGTTGACTAACGAAAAAATTCTCTCTTCCATTGATCTTCTCAATG
AAATTCTACATTCACTTCTCAGCAAGGACGACAACATCGAACAATTGAAA
ACCAGTATCAATTTCCATGGATTGTTGACCAGCTTCGTCTCTCTAATGCA
ACAACCGAATAACACAAACAAAGAATTTTCATCTCTCCGTCTGGTTCATG
AATTTCTACTCAGCTTAAGCGACGAATCTCCTTTACATCAACTGGTTCCT
CAAATAATTGACACAAGTTTGCTGAAAAACGATTTCCCTAAGTGTATACA
ATATCTATCCAAACTTTCCATCCGTGAAACTGAGACATTCAAAACCTTCC
TCACAACGACAATTCATGCTTTGGGAATCTTCCTCCGCCGATATAATACA
ATCATCGATGCTGAATACCAACTTATTTATGACTTCATAAAACTATTGCT
TAAGAACGACCACTTCACGCCCTTTGCTTTACAGCTTGCTTCGTTGAAAG
ACCTTACCAACAACGATTATAGAAACTTATATCATAACAATAAAGAAAGG
TCCGTTCTGGAAAATCTTCTGGCTGCTTTCAAAAATCACCGCAACACCGA
TTTCTTTGCCGCCCTCCAGCTCTCTCGTTCAAGGAGTTTGCAAATGTTGA
AAGATTATGGTCCCCCTAAATTCACCTGGGAGCAACCTGATGTGAATATC
GATCACGCCAAAGTTCAGGAGTTTCTCCGAAGTAAACGCGAAACAATCGT
ATTGCGAACTTTCCGATCCTATAAAAGCGCTAATAACTGGATCCAAAAGC
ATAGTGGATACAACAAAGACAGGAAATACAGTTTTACCGCCCAAATCCGT
ACCGCCAACAACGGGTGGAAGAGTTTAGTGGATGTTAAGAAAGGGCGTCA
TATTCACGAAGAGAGAGAGGAAAGATTTCAGAATCTTATGAATGAATTGG
AAGAAATTCTTGAAAGTTTGAAAATATCAAACGTTGAAAATCCATTAGCT
GCGTAA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_042346	XLOC_042346-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000238_pilon	genome	sc0000238_pilon:221652..225547 -

Properties


Property Name	Value
Aaloc	1144-2991:1849
Aaloc	379-1143:2615
Aaloc	280-375:3108
Aaloc	115-276:3897

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XLOC_042346 (mRNA) -