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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000144_pilon:269784..274196+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_042329 ID=XLOC_042329|Name=XLOC_042329|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4413bp|location=Sequence derived from alignment at sc0000144_pilon:269784..274196+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGGTAGTGTCATTCAAGAGGTTAAAACAGCCAATATTGCAAGAGAGGT
ATAACAGTCAATTATTGCTTATTCAAACTCCATTCAAGTAGCCTGTTAGA
TCTGTAATTTGCATCCCTTCTAttctaattcaaagaaattacagctgatt
ttaaaatgatcctACGGTGATGGACAATCTACTGAACTCTTTAAAAGAGC
ATATTTTACAGAATTCTTTTTACAAAAAGCTGTTTATTATGGCTTTAGAA
AGCTCTTTAATAATGTATAATATAATAGTTTaatcaaacattttttattc
taGGCAATGTTAAGCTGTGGCTTCCCAGCCAGTGTTCCAGCCCACAGTGT
TGTACAAGCTTGCATCTCTAGTAACCAAGCTATCACCTCAGGTATACATT
GATCATACATTGGCAACCTTTAGTGAGAGGCAAACCTTAGGATCTGTAAC
ATCTTTTCTAGGACAAAACCACGTAAATTTTGATAGTTTGATGTactaaa
agtcaatttttcaaggTGGTCCACTGTTAAGACCtagcaaaaacttcaaa
agacgGACGTTACTAAGCGAAACTTTCACATGCCAGTCTTTGGTCCATAA
CAATTTTAGCTTCAAATAAATTCAAGTTTCTAAAGAAAAATACTTACGAC
TGTATTCCAAAAAAGCTGGAAAGGAATTAAAATGACACAGCTCCTATATG
AATGGCCCTTACAAATAAATGTATTGGTTTAGTAGGCTTGAACATTATTG
TCTGTTCAGTCAAATCTTTGTTGCaaagttgttaaaaagaaaCGTCTACG
TCTATCCACCTAtaatagttgaaggttttaaagaaagtttgttgaaaata
gcaaaaaattacATACAGTATAGTATACCtacgttttttttcttatttag
cAATGGGGTTGATATTATCTGGACAATGTGACACAACTATTGCTGGTGGT
GTTGAATTTATGTCAGATGTTCCGATTAGACTTAACAGAGATTtacgaaa
aaaattattaacatTAAACAGAGCCAAATCTGCTGGACAGCGACTTAGCA
TTTTGGGTTCAATTAGACCAAAACATCTGTCTCCAGAGGTAAGCAGTTCA
AGTCACATGTATAGACCGACTTGAAAATTACTACTCACTTTAAACAGGAA
TTCTGTCGAAAATCTGAAATCTGTCAGGAAATCAAgtacagaaaaaaaat
aactaTAGCTTGAATTTTGGCtaaacatgaaatttgacaTATataatgca
aattttcaacTATTATctgaaatttgaatatctcagcatggaaaattata
ttttaaatttttttcagctTCCAGCCATCGCAGAATTCAGCACAGGAGAA
ACTATGGGCAAAAGTGGAGACAGGTACGGAGAAATATCTAACTGTActgt
cttttttaacatttttaatttcttattAAGccattctcaacttcagttga
gctagaatctgagaatgtctgtatgtctgtatgtcccaaaactttggggc
agcctggagacttcaaagattgtcggatttggctgaaatttggcacactt
ttgttccttaggtgaatatctgggggtgtttattttattttttttaaatt
ttgatttttggggcgtggggacgagttttttgccaaaacgatcttttgTG
ACTTCAATAATGAGTTTTAAAgctagtttgttttgctacaatTGGGCCTT
TGAATAATCTGaagctactgaagttgagcccagtgcgttgcgcacgctCG
ACTATGGTTTAACatatctttgatttgatattgacTTCCTTTTTCAGATT
AGCTGCTGCATTCGATGTTTCACGACAAGATCAAGTAAGTTATCATAGTT
CTTAAGTGCTGTTAACTTTTCAAAGGTGCCTTATTTCACTCTTTAATCTT
TCAATTAAACATATTActttgaaacaatttttgaaacaatgttgttctTC
TTAACCAGGATGAGTTTGCATTACGTTCACACAGTTTAGCTTTAAAAGCA
CAAGAAGAAGGCTTACTTGACGATGTTTTATCATTCAAAGTTCCAGGTAA
AGAAATATCCTTTGTTCTTTCCCATGAAATATAAGTAGTTAGACTATGTT
CAGACATTACGGTTCCGTTTTGCTCCGgtgtgattttcgttacggatcga
gagtgttcatattggttttggaacgtttctgagcaagaaaacggagccgt
tccgatgaaaattgTGGAgcaaaaccgtttcgatctgttttgctgtgtaa
cgtcttcttttttgacgttttaaattttgacgttcacacttgttttgaAC
CGTAACGTCTAAACATGGTCTTAGTGATCGATGAAAACTTCAATCATATA
GCTTTGTATTTATTGATGCTACGCCGCCCTAAAATTTTATAGTTAAGATC
tagaaaaaatgatttgaagCAATATCGTATACCTTTTACACTGAATTCTT
TCcggttttttttcttattcaatACAGGAGGTGATTACGTATCCAAAGAC
AACGGTATTAAAGCCTCATCCATAGAAAAGATGGCAAAACTGAAGCCAGC
TTTCATCAAACCACACGGCACTGTCACCGCTGCCAACGCTTCTTTCTTGA
CTGATGGTGCTTCAGCATGTTTGATCATGACTGAAGAGAAAGCTTTGGCT
ATGGGATACAAACCAAAAGCATACTTAAGGTAAAGGAGGCGGTTTGGCAC
GTCGAATAAACCTTTCTTCAAGAGAGCATCTACTTGATGTAACTTTGGAG
ACGAAATGTCAAAATAAGCTTGAATGCCGGCgggttttagtttttttatt
atttattttggtAAACAAGAATTTCCCAAACTATTGACCTTTGATTCTCA
GCAATTTTCTTTCATCATTTGCTcctcaaatttcattttcacgATTGCTT
TCTTCACATTTCAGGGACTTCATGTACGCTTCACAAGATCCTAAAGATCA
ACTTTTACTTGGGTGAGATTTTTAAATATcaagattaatttttttggatt
tcttagcttgttttggtttttgaagTAAATCGGCGAAAATTCAAATATTC
TTTGGGCTCTCAACAATCTGAAACctgtaatttttttatatttgattatg
TTTTATGTACAAAGGTTTATTTTGGTCTCTGAAATTATAAATCGGTGAAA
ATTCAAATATTCTTTGCTTGGCTTTCAACCCTCCAAAACCTGTGATCTTA
TGTTTGATAATTTTAGATGAACCTTTCTTTTTTCTAGCCCGACTTATTCT
ACAGCCGCTTTATTAGACAAAACTGGTTTAACTTTGAAAGATATTGATGT
TTTCGAAGTCCACGAAGCATTTGCTGTGAGTTCCattctttttctttgga
ttaTTATAACTTGGGGAGGGTGCTGATGCAACGATAAAATGGATAATAAA
GAATAAATtatgttgtattttaatgagAAATCCATGAAAATGTGAAGAAA
TTGGAGCTCCCTTATCCCTCGTTCATTTCTCTGGTCCTCATGTatgtaaT
ttttttgttttaaatccTGTGTTTTTGTAAATCTTGTTTCTAGGGACAAG
TGCTGGCCAACTTGAAAGCTATGGACTCTGACTTCTTTGCCACCAAAGAA
ATGGGACGTAAAAGTAAAgtaagttgaaaattttttttcatattttttat
gtttatctAACGATCAGCATTCATTGCAAAATCAATGTATTTAAAAGCCT
TTGATATGTAATCTTGATTTATTGAtcattttgcatttttactTTCTAGT
TGGGAGCCATTCCAATGGACAAATTGAACTTATGGGGAGGAAGTTTATCT
CTTGGACACCCTTTCGGTGCCACTGGTGTACGTCTGGTCACCACTGCAGC
CAACAGACTCATCCATGAAGATAAAGAACGCGCACTTGTAACCGCTTGTG
CTGCTGGGGGTTTGGtaagtagaaaaatattttgatatcgTCCACAGATG
TGTATCTCACTATTATAAATAGTCTTTATAAAAGCTTATGTAACTTTGCA
TTTTCTTCCACGCCCAGACTAAGATTGTGTAGCATCTTGTAATACACCTC
AGCGTAAGGAGACTAGACCATATAGTTTAAGAGGGAAACAATAATGTCAA
TTTATCTTTAAGAAATCAACACATTAAGTCTAGACATTTGACGTACGCCC
TTCCCGGTCATTTGAACCCAATCCCCAATGCGGAGGCCTATTTTAAATGT
GTGATAAGGTTCATCGTTCAATAAGATCTGTTACGTAAGCTTTGAATCTG
TGGCGCCACTTATATTTTAGCCATGTCGTAGCAACCCATGCTTCAACCAG
AAACCTTTATTTTGATGAAGCGAAAGATAATTGATTAAAAAGGAACATCA
ATAATTCATTTTTCTATTCTCCAGGGACACGCCATGATTATTGAAAGATA
TCCTTCCAAATAG Coding sequence (CDS) from alignment at sc0000144_pilon:269784..274196+ >XLOC_042329 ID=XLOC_042329|Name=XLOC_042329|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2244bp|location=Sequence derived from alignment at sc0000144_pilon:269784..274196+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGGTAGTGTCATTCAAGAGGTTAAAACAGCCAATATTGCAAGAGAGAT
GGGTAGTGTCATTCAAGAGGTTAAAACAGCCAATATTGCAAGAGAGGCAA
TGTTAAGCTGTGGCTTCCCAGCCAGTGTTCCAGCCCACAGTGTTGTACAA
GCTTGCATCTCTAGTAACCAAGCTATCACCTCAGGCAATGTTAAGCTGTG
GCTTCCCAGCCAGTGTTCCAGCCCACAGTGTTGTACAAGCTTGCATCTCT
AGTAACCAAGCTATCACCTCAGcAATGGGGTTGATATTATCTGGACAATG
TGACACAACTATTGCTGGTGGTGTTGAATTTATGTCAGATGTTCCGATTA
GACTTAACAGAGATTtacgaaaaaaattattaacatTAAACAGAGCCAAA
TCTGCTGGACAGCGACTTAGCATTTTGGGTTCAATTAGACCAAAACATCT
GTCTCCAGAGcAATGGGGTTGATATTATCTGGACAATGTGACACAACTAT
TGCTGGTGGTGTTGAATTTATGTCAGATGTTCCGATTAGACTTAACAGAG
ATTtacgaaaaaaattattaacatTAAACAGAGCCAAATCTGCTGGACAG
CGACTTAGCATTTTGGGTTCAATTAGACCAAAACATCTGTCTCCAGAGct
TCCAGCCATCGCAGAATTCAGCACAGGAGAAACTATGGGCAAAAGTGGAG
ACAGctTCCAGCCATCGCAGAATTCAGCACAGGAGAAACTATGGGCAAAA
GTGGAGACAGATTAGCTGCTGCATTCGATGTTTCACGACAAGATCAAATT
AGCTGCTGCATTCGATGTTTCACGACAAGATCAAGATGAGTTTGCATTAC
GTTCACACAGTTTAGCTTTAAAAGCACAAGAAGAAGGCTTACTTGACGAT
GTTTTATCATTCAAAGTTCCAGGATGAGTTTGCATTACGTTCACACAGTT
TAGCTTTAAAAGCACAAGAAGAAGGCTTACTTGACGATGTTTTATCATTC
AAAGTTCCAGGAGGTGATTACGTATCCAAAGACAACGGTATTAAAGCCTC
ATCCATAGAAAAGATGGCAAAACTGAAGCCAGCTTTCATCAAACCACACG
GCACTGTCACCGCTGCCAACGCTTCTTTCTTGACTGATGGTGCTTCAGCA
TGTTTGATCATGACTGAAGAGAAAGCTTTGGCTATGGGATACAAACCAAA
AGCATACTTAAGGAGGTGATTACGTATCCAAAGACAACGGTATTAAAGCC
TCATCCATAGAAAAGATGGCAAAACTGAAGCCAGCTTTCATCAAACCACA
CGGCACTGTCACCGCTGCCAACGCTTCTTTCTTGACTGATGGTGCTTCAG
CATGTTTGATCATGACTGAAGAGAAAGCTTTGGCTATGGGATACAAACCA
AAAGCATACTTAAGGGACTTCATGTACGCTTCACAAGATCCTAAAGATCA
ACTTTTACTTGGGGACTTCATGTACGCTTCACAAGATCCTAAAGATCAAC
TTTTACTTGGCCCGACTTATTCTACAGCCGCTTTATTAGACAAAACTGGT
TTAACTTTGAAAGATATTGATGTTTTCGAAGTCCACGAAGCATTTGCTCC
CGACTTATTCTACAGCCGCTTTATTAGACAAAACTGGTTTAACTTTGAAA
GATATTGATGTTTTCGAAGTCCACGAAGCATTTGCTGGACAAGTGCTGGC
CAACTTGAAAGCTATGGACTCTGACTTCTTTGCCACCAAAGAAATGGGAC
GTAAAAGTAAAGGACAAGTGCTGGCCAACTTGAAAGCTATGGACTCTGAC
TTCTTTGCCACCAAAGAAATGGGACGTAAAAGTAAATTGGGAGCCATTCC
AATGGACAAATTGAACTTATGGGGAGGAAGTTTATCTCTTGGACACCCTT
TCGGTGCCACTGGTGTACGTCTGGTCACCACTGCAGCCAACAGACTCATC
CATGAAGATAAAGAACGCGCACTTGTAACCGCTTGTGCTGCTGGGGGTTT
GTTGGGAGCCATTCCAATGGACAAATTGAACTTATGGGGAGGAAGTTTAT
CTCTTGGACACCCTTTCGGTGCCACTGGTGTACGTCTGGTCACCACTGCA
GCCAACAGACTCATCCATGAAGATAAAGAACGCGCACTTGTAACCGCTTG
TGCTGCTGGGGGTTTGGGACACGCCATGATTATTGAAAGATATCCTTCCA
AATAGGGACACGCCATGATTATTGAAAGATATCCTTCCAAATAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000144_pilon | genome | sc0000144_pilon:269784..274196 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1084-1122:4375 |
| Aaloc | 919-1083:3750 |
| Aaloc | 844-918:3544 |
| Aaloc | 757-843:3239 |
| Aaloc | 709-753:2916 |
| Aaloc | 508-705:2480 |
| Aaloc | 418-504:1959 |
| Aaloc | 382-417:1799 |
| Aaloc | 325-378:1318 |
| Aaloc | 139-324:903 |
| Aaloc | 49-135:304 |
| Aaloc | 1-48:1 |
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