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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000062_pilon:680795..687386+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_042200 ID=XLOC_042200|Name=XLOC_042200|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6592bp|location=Sequence derived from alignment at sc0000062_pilon:680795..687386+ (Clytia hemisphaerica_ch_hm2_pilon)
AGGTgctataaaaataagaaaaaatcaaggaaaaaaatGATCACTCCATT
GTTCAAGATTCGACAGGACGATGATAACCTTTTCATTGATATATATGCCA
AATTTGTCAAGGTATTATAATTTCCCATAATTCCCTCTGGTCTcgtcatt
aatatttttttttgtctttataagaatatttaagcTGAGGTTCTTTTTAA
CCTTTCTGCGCTTTATTTAGAGTTTATCTTGGTAAAGGTTTTGGGTCTCT
AATGCAGGTAACTCTCTTTGAACAACATTGGCTTTTCTCAATTTTTAGGC
AAACGATGTTGAAATATACGTGGAAGGGAACATGTTTAAATTTTACGTGA
AGCCATATTTTCTGAGGTAtttttttATGTTCACTTTACTTTTGTTTGTA
ACGTATAAAGACATGACCTCATTCCCAGCTCAGATGCTAGCTACAGGCCC
CTGGCTTGAGGGCTGAAGTGAGGGGTTCGAATATTGGAATAAATTGACGT
TGTCCACCATGGGTGGGTAACagagaaagtttttgaattttgaaattgct
aTTCTTGTACCCATTTCGAGTCAatttgaatggaaaaataactgaaagtt
ttcaaaataaccTTTATCGGCAAAAAATTGAAGGGGGCTATGAGGTATAT
TGAAGAgtccttattttcttttttcatcatcAATTTCAGATTGAATCTAC
CTGGCAAGCTTTGTGAAGAGTGTGAAGAATCTGGCAAATATGACGTCGGT
GAAGGTATATATACCCTTCTTCATTGGTGTTTTTACCAGAGGAAAGAGGA
TGTATTAGGGAGTTAAgatcttaacttttttaaaccGTTGAGAGATAGAG
ATTTGTAAGTTCAATTTCACGGTCTTCACTGAACATATCTCTTAAAAAAG
ACATCAGCAAAGATTACActgatattttgatatttttaaatgatattttt
tagcttccatcaggtgttttgaggattttgtgctttgatatttttatgat
aAACGAATTAGATGGGTCGAATGTGATAAGGCTTGGTCAATTGCGAAAAC
TCAAGCAATAGAAGTTTCAACTCTAGTTAAAAACTCTGAGTATAACATAA
CAGGACAATTtattttgaagagaaaaaagaataacgaaaaacgtttcgaa
aaagaagaagaaacagtttattttcttcaattttcatttctcTGTGAtgg
ataaataaaataaaagaaaaaagttgcaCAGTTCAAAAATTCGACTGTTC
gaggaatgtttgaaaaatttgatcggAATTTGTTTATGGATGAGCTACTG
GTCACTCGCTCTTAGGATACACACCGTTTCGTCACGGGTCTTAAAAAAGA
AATCGAtttcgttttttaatttttaataatcGGCACACGGCGAATAGCTG
CATGATCTCCTCCCAGCCAaatacttttatttactttttctttccaattt
tctttgaaaatgttattttttatgtATACCACATGGAGTTCGAGAAGCGA
TTCATTTCCTGAACACTAAGAGAGTTTCATATATATATAGCTCATTTATA
ATTTCgctccttttttttctttcatttctctttactttctctctcaggaa
tctttcactttAAATTGAAGAAAGCAACACCAGGAGAATTCTTTCAAGAT
TTGGATATGGTAACGACGTTAATGGCAACCAGAAAGGAACTTCAAATACC
TTTAATTGAAGAAATTAGTACTGGTATAAACAAGCGTGTTTCGATAATTC
ATACTCTCTTCGCTCCCTTATTTCtaaggtatttttttttaaatgaaaga
aGGGGGTTATTGTTGTAGAGGGAATGCTTAGTTAATGTGTGTGGGTGGGT
AATAGTAAGTCCCATTCGGTATTTCACAaattttttgagagggaggacgt
gAGTTAGGACATGAGGAAATTTTATGATAAAGAATGTGATGTAATTGTTA
AAAACTGTATCCGTTTAAAGTTagaaaaacttagaaaaacGTCCCTACGT
CAATAAGATACGACGTCAAATCGTAATGGGGATGACAGAGAGCTAGTCTT
AAAACGCGGCTGTCTCTTTTTGTGTTTAAGTACGAAAGCTGTTGTATTAC
ATTTCATGCTCTCTCAGATGGTATCAAACCCGTTTATTTTGCGTGCGTTG
TCACATTTATTCGTCATAAAATATTCCCTGGTACAATCCGCGTCTTCTCT
CTTGTCATACctaattgaattcaattttagTTCTATAAACGATGTCACGG
GACCCTTTTCTTGTCCCCTACTATAAAAACGAATTTTGCATATAATATTC
TGTTAGGCTTATAAAGGATGATACAACGGTTGTAGTTAGGTATTGTTACC
TAAAAGCTGGAATGATATTCCCGTATGCTATCGTAAATACGTAACTTCCT
TTTTGCGACAATTGTATAAGTCATTTTTCGTACTTGATAGAtctggagaa
aaaattgaaagtaagtgaagaggaagagcatgaagaagaaaaagaagaag
aagattggGATTGGTGTCAACAAACTTCTTCTCAGGTATTCATTCTTCTC
TCTAACGTTCCTTCCTCTCCTTCCCTACCTAAACAATGGGAGTGTTTATT
CCATCTTCACCTgagattatttcaaaaattggttttgtttttttggcgGA
TTTTTGTGCATCGAACATGATACCACCACGAACAATCTATTTATTTCGTA
AAATATCTCAAGACAGTGCTTTCCCGTCAAAAGATTTGCCGGGTggttca
aaaaaaacttcggaTCTTTGGTGACGTTTTTAGAGCTAACAAAGTGATAA
GTAAGGTCGACCTTGCTCTGTTAAAATTGgggagggtctaaaacttaaaa
aattttgatgtatttttactttttacactCGGACAATCGGTTcaaaagtt
acgatcactttgaatcaaaaatcacttttcaaaaggtgcaaaaaatacgt
caaaaaaggTGATTGAAttttgtccggtttgttttttctttcgttctttt
ctttGATTCAACCGAACGTACACGCATTTTTACGTAATGTAATCAACTCT
ACCATTGAGTATTACCAGAAGGTATTTGCATGTAAAATTaacaattaaaa
ttattttcgggtaaaaatgtattgaaaagaaatgatATTGGTGATGGTGA
TGATAGTGTGTAAAACTCCTCGTCTTTTCTTACGAAGGACCAGAGAGTGT
GGGTTTGTCTTGAGTATGCCTGAGTTAATAACGCTTTTCCCCAAAGAATC
AGTTTTGTATATAGCcttgtgaatatttttttcataaaacattATTAAGA
CATTTCTGATTCAATCTCGTGtctctttttcattttcgctCATTTTGAAA
GCTGATTACTCAAAGAACTACTGAACcaattttaaaaagcaataACTCAA
AACTTAAGTTAGACCTTCCTCTTTCCTATGACGTTAAATTCAAGTTCATA
TCTTGATCCATTCTGCTCAAAAGCGTTGCCAAACATCcgaagtttttttt
ggaccacccggtaGGTGTTGTAATCGCTTACAAATACGAAGTGCCCtgta
tatcagtatatgtatatgtatgtatttctttttgtttgtatttattatct
gtatatatttctttGCAAGTCAAGTGAAGCTAACATGCACATAATGCAAC
ATCAAtgaaactctttttttttcagaatgtcGAGGATTTAACAGGAAAAT
ACAAATATGGCTTCGCAAATAGTTTCCAAGATGCCTTGTCCAAATTTCAG
GTATGTTCATATAGGTTTTACTCATATTGTGAGTTCCTCTGTAATAACTC
Atccatttttagtattttaaaaatataaacttatttttattttgataaaa
attgagatttGTTGGTACTTGAATTTTATTCAGTAGGATATCGTTTGTTC
GTAGCACCAGGTTTTTGTCCGAAAAACTAACCATGACTAATATGTACAAA
CGTTTTCATTGAATAGGAGGAGACAGAGGAATTCATCGACATTCCATCAC
CGGATACTACTTCTCATGCTGAACGACGGAAACTTCGCATCCATCACGAA
AACAACCATTTCAACGTAGAACACTATATGTAAGATTTTTCAATAGTCAA
TCCTCTTTTCTTTCGATATGAAATAAGCCGGAATAACGATATTGCATTTG
TTTTGTGATATCCATTCCAACATCCTGTTTGTATTCCTGCTCGTTAACAA
TCGTTCGATTACCACTCTAAAGGAAATACCTccgccatttttttttttga
agttttattttttaagtttatttcaCCAATACTAAAGTAGAAAATATGAT
AATGGAATTGTGTCTTTTTCCCAAGTTTTTCTCACTTCTTTCCAATAGAA
TAATGGTtgctttaaaagttattttagtTTTGATCTACGTCAAACAATCA
GGTCaaatcttgtttttgtttttcgaaaatactTTTATGTTTGAGTGAGA
AATTCTCCAATTGATGTTTTGACTCCGAACCTCGCCCTTGGCGTTGAAAC
TCTTTCTACTGTAGTctttcaaactaattttattgTATGAGAAATAATGC
TATTAGAGACAAAACTTTAAAAgctgtttcaaaattttccggACCTTTTA
ATACTTATTTTAGGGCGGACTATGTGGAGTGGGATAATATGAGTTCTTTG
GTCAACTTTGCACCTCCTTGGCtgtcgaaaatgaaaaatagcgAAGaaaa
aaaCGAACATTTCGACATGTTGCATTTCacagatgaagaagaaaaaatgt
tgACTCTTCTACCAAATAAGGATTATATCTTTTTCACCTTTTCATCGTTA
ATTGGaaattcttctttcttctctcctttccctcatcatttggtattgtt
ctttttggtatctttctttttgtctGATGGTACAGTTAAAGGAGTGGGTT
ACTAACTCGAATTTTATTAACCATCAGGACAGTAGTAGGTTGAATTGGGT
TACTGAAAGAGATTTAGATCACGAGCCTGGGCTTGcttgaactttttgaa
gttcttattttgtttcttACTCACTGAGGTGGTAGCATGAAGATTTACTG
AAAAGGGTATATACCCTTTGTATCTAGATTGTGTTTGAAGTGACGAAATG
TTAATATTTGAAGAGATAAAAAGTCCTTAACAGATTTGATCACATCTCCT
CTCGTCACTGGACGAACGAAAATGTTTACTTTCGCTGGTGGATCTTCTCT
TCGCTTATTGTTATGACCACAGGACCACTGAGGGTGAAAACACGGTATGT
CGAAATTTCTCCAGCATGCTAGATAATTTAAAAAAGAGTAAGGTTATTGT
AGGGAAAAGAGCATTATTGggctgtaaccccctggaattccccctggaat
tctgaattttagtaggatttaaaaagctacccccatggaattccagttat
ttttgacagatttttatatctccctatggaattccaccATATATCAAACA
TTACGGAAATGGAaatagacctcctcaacagagggtatacgtttttttct
ggaaaagcccattgtagtttatacaaacttCATTCTCCAGTGAcagttat
cgtattatcatataacacctataTTACCGTATAACACGGttaacgttata
aacgactcgTAATGATCAAAACTGACATCAAACTGTGGctagaaaatgtt
ttgaaaacggCATcgcctttcttttttatagagTGAATCACCTTGGACGA
TATGCAAGCTGAGCAGCACTCTCTCATGGTTTGATGTAATACTAGAAATT
ATATGAGTTTGAATTAATACAATTTTTAAGTTGAAAGTAATACTTCATTC
CATCATAGTACCGGGTTTACtacatttttttgcataaaagttttatcttt
aaaatattcatATGAGAATTCAAACTTAAACATTATTAAGACCGTTCTTT
TAGAGTTTTCAAACAATTGATGAAGTGGTGGTCAATTGTTGTCGAAGGGC
TTTATGTTATCCACTCTATCGAAACTGGCAACTGATACTCATCATTTGGA
ATGATGTCAAAGAGATCATGATGGCAGGTAAAGTATTATTCACTCCATCA
AAGGATTAGaacaatcttcaaaaaaatcgaGAGAGGGCTTGACTCATTCT
TGAGGACTTTTTCTTAATCAAGGGTTGAGATGATCATTTGAGAGCTTCTA
AGGGTTTTGAAGCGTTGGCTAGGTTTTGTTGTCGTGAGGTTTAAACATCA
ATTGGGGGTATGTGATTTCCatatatcttaaaatttcttccttcgtAGGG
AAAGTTTGCATAATAAAATGTTTGTTAGATATGCGTGGTATTCTAATGAG
AGACGAATCGCGATACATTCTCAATGAACTTTACGTCAACCATTACATTG
TTTGGGTACAAAAGGTGAGTCTACAACGTCTCTCATCCATCGCAGAAGCA
TTGAAAGAGAAAGACATTCAGAAAGAAGTGGTTGGGTTCAATTTGGAACA
GATCGAATCAGTGTTTCTCAATAACAACCAAGATGATATTTCATCTTCTT
CAACTTCAACCGAGGAAGATTCATCGAGTGAAGACGAAGAGAGTGACCAA
AGCCTCGATTCCGATGATGAACCAACTCCTCCACCTCCTTGA Coding sequence (CDS) from alignment at sc0000062_pilon:680795..687386+ >XLOC_042200 ID=XLOC_042200|Name=XLOC_042200|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2874bp|location=Sequence derived from alignment at sc0000062_pilon:680795..687386+ (Clytia hemisphaerica_ch_hm2_pilon)
AGGTgctataaaaataagaaaaaatcaaggaaaaaaatGATCACTCCATT
GTTCAAGATTCGACAGGACGATGATAACCTTTTCATTGATATATATGCCA
AATTTGTCAAGAGGTgctataaaaataagaaaaaatcaaggaaaaaaatG
ATCACTCCATTGTTCAAGATTCGACAGGACGATGATAACCTTTTCATTGA
TATATATGCCAAATTTGTCAAGGCAAACGATGTTGAAATATACGTGGAAG
GGAACATGTTTAAATTTTACGTGAAGCCATATTTTCTGAGGCAAACGATG
TTGAAATATACGTGGAAGGGAACATGTTTAAATTTTACGTGAAGCCATAT
TTTCTGAGATTGAATCTACCTGGCAAGCTTTGTGAAGAGTGTGAAGAATC
TGGCAAATATGACGTCGGTGAAGATTGAATCTACCTGGCAAGCTTTGTGA
AGAGTGTGAAGAATCTGGCAAATATGACGTCGGTGAAGgaatctttcact
ttAAATTGAAGAAAGCAACACCAGGAGAATTCTTTCAAGATTTGGATATG
GTAACGACGTTAATGGCAACCAGAAAGGAACTTCAAATACCTTTAATTGA
AGAAATTAGTACTGgaatctttcactttAAATTGAAGAAAGCAACACCAG
GAGAATTCTTTCAAGATTTGGATATGGTAACGACGTTAATGGCAACCAGA
AAGGAACTTCAAATACCTTTAATTGAAGAAATTAGTACTGAtctggagaa
aaaattgaaagtaagtgaagaggaagagcatgaagaagaaaaagaagaag
aagattggGATTGGTGTCAACAAACTTCTTCTCAGAtctggagaaaaaat
tgaaagtaagtgaagaggaagagcatgaagaagaaaaagaagaagaagat
tggGATTGGTGTCAACAAACTTCTTCTCAGaatgtcGAGGATTTAACAGG
AAAATACAAATATGGCTTCGCAAATAGTTTCCAAGATGCCTTGTCCAAAT
TTCAGaatgtcGAGGATTTAACAGGAAAATACAAATATGGCTTCGCAAAT
AGTTTCCAAGATGCCTTGTCCAAATTTCAGGAGGAGACAGAGGAATTCAT
CGACATTCCATCACCGGATACTACTTCTCATGCTGAACGACGGAAACTTC
GCATCCATCACGAAAACAACCATTTCAACGTAGAACACTATATGAGGAGA
CAGAGGAATTCATCGACATTCCATCACCGGATACTACTTCTCATGCTGAA
CGACGGAAACTTCGCATCCATCACGAAAACAACCATTTCAACGTAGAACA
CTATATGGCGGACTATGTGGAGTGGGATAATATGAGTTCTTTGGTCAACT
TTGCACCTCCTTGGCtgtcgaaaatgaaaaatagcgAAGaaaaaaaCGAA
CATTTCGACATGTTGCATTTCacagatgaagaagaaaaaatgttgACTCT
TCTACCAAATAAGGATTGGCGGACTATGTGGAGTGGGATAATATGAGTTC
TTTGGTCAACTTTGCACCTCCTTGGCtgtcgaaaatgaaaaatagcgAAG
aaaaaaaCGAACATTTCGACATGTTGCATTTCacagatgaagaagaaaaa
atgttgACTCTTCTACCAAATAAGGATTATCTCCTCTCGTCACTGGACGA
ACGAAAATGTTTACTTTCGCTGGTGGATCTTCTCTTCGCTTATTGTTATG
ACCACAGGACCACTGAGGGTGAAAACACGATCTCCTCTCGTCACTGGACG
AACGAAAATGTTTACTTTCGCTGGTGGATCTTCTCTTCGCTTATTGTTAT
GACCACAGGACCACTGAGGGTGAAAACACGagTGAATCACCTTGGACGAT
ATGCAAGCTGAGCAGCACTCTCTCATGGTTTGATagTGAATCACCTTGGA
CGATATGCAAGCTGAGCAGCACTCTCTCATGGTTTGATAGTTTTCAAACA
ATTGATGAAGTGGTGGTCAATTGTTGTCGAAGGGCTTTATGTTATCCACT
CTATCGAAACTGGCAACTGATACTCATCATTTGGAATGATGTCAAAGAGA
TCATGATGGCAGAGTTTTCAAACAATTGATGAAGTGGTGGTCAATTGTTG
TCGAAGGGCTTTATGTTATCCACTCTATCGAAACTGGCAACTGATACTCA
TCATTTGGAATGATGTCAAAGAGATCATGATGGCAGGGAAAGTTTGCATA
ATAAAATGTTTGTTAGATATGCGTGGTATTCTAATGAGAGACGAATCGCG
ATACATTCTCAATGAACTTTACGTCAACCATTACATTGTTTGGGTACAAA
AGGTGAGTCTACAACGTCTCTCATCCATCGCAGAAGCATTGAAAGAGAAA
GACATTCAGAAAGAAGTGGTTGGGTTCAATTTGGAACAGATCGAATCAGT
GTTTCTCAATAACAACCAAGATGATATTTCATCTTCTTCAACTTCAACCG
AGGAAGATTCATCGAGTGAAGACGAAGAGAGTGACCAAAGCCTCGATTCC
GATGATGAACCAACTCCTCCACCTCCTTGAGGAAAGTTTGCATAATAAAA
TGTTTGTTAGATATGCGTGGTATTCTAATGAGAGACGAATCGCGATACAT
TCTCAATGAACTTTACGTCAACCATTACATTGTTTGGGTACAAAAGGTGA
GTCTACAACGTCTCTCATCCATCGCAGAAGCATTGAAAGAGAAAGACATT
CAGAAAGAAGTGGTTGGGTTCAATTTGGAACAGATCGAATCAGTGTTTCT
CAATAACAACCAAGATGATATTTCATCTTCTTCAACTTCAACCGAGGAAG
ATTCATCGAGTGAAGACGAAGAGAGTGACCAAAGCCTCGATTCCGATGAT
GAACCAACTCCTCCACCTCCTTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000062_pilon | genome | sc0000062_pilon:680795..687386 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1096-1437:6251 |
| Aaloc | 970-1092:5904 |
| Aaloc | 916-969:5682 |
| Aaloc | 817-915:5146 |
| Aaloc | 655-813:4615 |
| Aaloc | 541-651:3967 |
| Aaloc | 466-540:3676 |
| Aaloc | 373-465:2443 |
| Aaloc | 247-369:1600 |
| Aaloc | 181-243:691 |
| Aaloc | 112-177:299 |
| Aaloc | 1-111:1 |
|
