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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000062_pilon:515868..521694+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_042192 ID=XLOC_042192|Name=XLOC_042192|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5827bp|location=Sequence derived from alignment at sc0000062_pilon:515868..521694+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCAGACCAAGTAGTGACAGCAGCAGCAATGGTGGAACATTTGAACGA
TCACGTCATTGGTAAACTGATTGTGGAAAAATTGAACGAAGAAATTCACA
CTGAAGAAACTATGACTACAGGTAGAAACATTTCTTCAACCAAATTCTTC
TGCAAACGAATTTTTCTCGCTCACTCTTCAACAAACAGCTTCTACGTAGA
TTGACATTGTTCTATATCAAGAgggggggAtgtgttcattttttttgtta
tcgTTTGCCTCTTCAACAAGTTATACACAGTGGTGGAAGAGAAATTTGAG
CAAATTAATTGATTGGAGGGTTTTTGGTTGTTTCTTTCCAGTGGAAGCAG
TAGTTGTAGGTGAACAAGCAGCAGAATTAGTCATCCAACACCAACCTCAA
GAATCCATACCGCCCGATGAGATACCGCCCACGCAGATTGTAAGCGAAGA
ACAGATGATCGTATCCACCGTAGAAGGAGGAGAGAAAGAGAACGAAGAAG
CGGTCGAACAGGATGACGAACGGCATATTGAAATCACCATCGGTGACCCA
GTGGCCGACAAAGTCATCGATAGTTGTGTTGGAACTGTATGTATTTTCTC
TAATCGGAATGATTGTCTCGATTTTAGTCGAAAAGTTCTCTGAGGGCAGT
TTTCTAGGCACTCTTTGCacttcaagtttttttatgaatattcaaaattt
ttgaagatttcggatgttcttaacttttcgagttttaacctaaaaatgtt
cttaacacgtTCTTATTTTACCATTTTGCGTCTTAGAGTCCTCAAAAACT
TGTCCTTAgtatttcggccatcgaagccttaggttcttatatagtttgtt
ctttatgaaaaaaaaacaacgtgtatttcTCTTTTCTCCTGCATCATTTA
GTTTCCTATGCTCGAACTAGTGTAATCAAACAATATCCAACGTTGAAAGT
CCACAGACTTACCATTAAGAAACGTACAAAAATGTTCAAAGGGTGCATAT
TTATATTTAATACAAACATTCAACATCACCCTTTCATCAAACTTGAACTA
AACAATGACGCTTTTCTCTTCAGGACAACAGAAGATATTACAAGGTGAAG
TGGCAAGCCACGTGGGAGCCTGAGGACGAGCTTCTGGTCAAATATCAAAA
CCTGATCGAAGATTACTGGAAGGTGACGGTTCAAGAACAGAATGAATTGG
AACACAAGAATCTCATTAATAACCTCTTCGAAAATGTAACGGTTAGTGTG
AACAAAGACACTTAATGTTTTGGAATTAATCCGAATAGTATAATTCTCCG
CAGCCAATTTTCCACTATTTCCCACTCTACCATACTGTTTCGTGGCTCCC
TTACGGACTCTCAGTCACCTCGTTGAAGATATCATGCTCAACCTTTTGCT
TTTCTATGACCGGTCACACTCTTAACATTACAGCCAGGCGAAGGAAACGA
AGATATCAAACCAAACATAGACAAACTGAATGTTGGAAAGCGTAGCGGTG
AAGCGGAGACTTCAGGCAGCGGCGGTGGAGGTGAACAGATGGTTCAAGGT
ATCAATTATATTAGACGTGTTTTACTGAAATCAATATTACGTCAGGCTTT
TGTTAAGGAGTTTCGAGATCGTCGACAGAGAGTGATCTGATGACTCAGCA
CAAAAAGTACATGCATGCAAACATACTCCTTTCTTTCTCTCGTTCTTAAC
ATTATTCATTTACTCTTCTGTCTTTTATTGTATGGagtcactttgcaatt
tttttggaaaaaaccaCCCCAATAGTAATTTATAATGACCCCCCTCCcca
tttgataaaattttcctgaaaaagtgcAAAAACCTTACACTTTCCCaggg
ttttttggaaaaatcatccCAAAATCACCTAatattgaccccccccccat
tttatggattttctcccAGAGTACCTCCAACCTGCTTATCCCACCCACat
cctacaattaagcacagaagagtgTGTCTACTAATGCATGTCTTCCGTGC
ATGAAAGTGATCCGATTGCTATTATTACCATTGCTTTGTCTTTCTCTAGA
TACAGATGCGGATGGCCACGAAAACGCATTGACTGCTTACAAACAAGGTT
AGTGAGATCAGCGTTATGGAACTGACTCTTCTATCAAGCAATCTCATCAA
TAAATCTTTTGAGTTCTCTCTCAGCTAAGTTCAGGAACCGTCTCAAAATC
CAGCTAAATGCagctaaattttttattaaatctGCAGATCCTTGGCTAAT
TCTTCGAGTAAATTTCAAGTTCAGTTTGACAAGAAAATCTTTGGTTCAAC
CACACTGCCTTGGTATCTGAGAAACATGTACAAAAAGCAGTAAGGCTGAC
TCAAATTCTTTCCTTTCCGCATTCAGTGAATTCACCAGAACACAAGATCA
GCGACGAGCCAGTCCTCATTACCGACAGCAAACCACCTCCGTTGAAAAAC
GTAGAGAAAGTGACAGATGAGTTACCTCACAAATGTGACGAATGTACTCG
CTCCTATTCTACTCTTCGAAAACTGAAAGATCATCAACGCAAATTACATA
CAAACTTAGGTATGGTGaactaaaaagtaaaatcaacagaTTTTTCATgg
tattttgttttctttcagaACTTCATCAGATAGATATGATATTATAAACC
TTGACACATTTTATTGTTGTACAACTTAACCCTGAATCTACCCGTCTTTA
TCCCATACAAAGACCATActttcgggtacctaatagccggttTGCGTTGG
Aataatcggggggggggggggagtaaaaatatcctgggtggaaagttttt
gaaaaggaggaattaggacaaaagagggaactttcaaaaaaaacattttc
ccaaaaattaatacacgggtttggaataagaatgtcctgggtgaaaattt
ttcgaaaaattgattagCGAGGGAAAAGAGGGAActtccaaaaaaacatt
ttcccaaaaattaatacacgggtttggaataagaatgtcctgggtgaaaa
attttcgaaaaattgattagCGAGGGGGAAATAAGTGACACTTCTCTATC
CTTGACCTGATTTGGACTCTGGTCAAAAATAAGGTTAAGCAAGTCAAACT
TGTCAAATGCCATGCAGAATACCTAAATTGTTCTGAAAAAGCATTTATTG
ATTATTCTGTATTCTATATCTCATACTCATTAATAACAATTTTCCAACGT
TAGGATTATATCAATGTTCTGAATGTCCGAAGCAGTTCAACACGAAGCGT
TCTTTACAGATGCATATGAACAGACACACGGGCATCGGTCCACACGCATG
TCCTGGTTGTGGGAAACGTTACATGACACCTCAAGAACTTGTCTTTCACA
AAAGGTATAATGAGGCTTTAAGTGATAACtcttctattttttcaaaattg
tccatctcaatttttgagaatttctcAATACCAGGGGAAAATTAATCGGA
CAAAATTTTGTCTGAGATAAAGcatcccctggaaattcttctcccaTTAC
CCCCCTGGGAATGTTTGTCCACCCCCCTacatggatataaaatggaatag
cTCATTGGATGGATTGATTACCCAATAACCTTCTTATATCAATTGAATTG
TCAGTTTTGATAGCACAATGATCACGACAAGTATAAGAAGCTAGCTTCCT
TATGTTCATATTTCATGGATAGCACGTGTATTCTGTGTATTCCCAATACC
TTTTGAGTAATTCAATATTCACCTTTAACGCACTAGATCATGCAATGGTT
TGGTTGATAAGGAGTTCACTTGTGAGCAATGCGGTAAACGGTTCGCCACC
AAGACACATTTAGTGTTCCACATGAAGATTCATCTACCAGATGATGAGAA
GCCCTTCAAATGTCAATTCTGTACTCGAACCTTCGCTTATAATCATGATT
GCGTGCACCATATGAGGTGAGTAGTGGATTAGATCTTTCCTGTTTTTTCT
GTCCATTACGTTTTAACGTGAATGATCTACCTACAATGAAGTAATTGTAA
CGGAGGCCATACAATAGCAGTTGTTCCCTTCAATTCTCTTTTTGGTGTTT
CGATTTCTCGATGTAGAGGCTAATCGCATTGATTTCGCCCACCCTTTGAA
GACTTACGCGATATTTGAAGTAACAAAGAAATTGTTCGTTGGCTTGGTTA
GTTAGTTGGCTTGCCGCATTCTCATTATCATCTATATCGTGTTAGAATTT
ATGCTTTTACATTGTTCTGTATAAATGTTACACTGACAAATGTCCCTCCG
TCTAGGTTACATCTTGGTGAAAAGCCTTACAAGTGTACGGAATGCGACAA
AGCTTTCCACCGGAAGTCTTACCTTACGGAACACATGTTTGTACATACGG
GAATCTCCAAATATCAGTGTGAAACTTGCAAGGTATGTTTATTGAAATAA
CTTTTCTGTAAGTTTCTTTCTTGGGTAGAAAAGTTAGAGCTGAAGTTCAT
AAAGCCGTTTATCACAAGACCTTTTCAAGTGGAACAACTCATGTACCTAT
TCCTTCAAATAAAATAAACGCCCCCTgcttttaaacgcccctctcGAATA
AACGCCGCTTCGAATAAACACTTCCCTCTAGGATGGCCGTTTATATTCAA
GAGTTTTAAGCCAGAAAGCCTGTTACAGTCATTCGAAgctattttatttt
atgttccATGCAGCAATACTTTCGGACACAACAGATGTTGCAAACGCACG
TCAAGAACATTCACATTCTCAAGAAGACAGCTAAAACACCTCGCGCACGG
AATGCAAGACCCAACGATAAATCACCAGCCAAAAGAAATACTAAAAAGAA
ATATAGGTTTGTGTTGTTTCTTTCTCATTGTATCTTCGTCTTCATTAATA
CGTCATGTCTTACGGTCGAGACTGCTTATTGTATTCCAATGACAAACCCC
CGCCGCCCCAAGTAGGTTTATTTTGAAGTATTGCAAAAGAATGACCCAGG
AAATATGAAGTGAAATAATTTCTTTGGTATAGAACGTTGAAGACAAAATA
CATTTCAACCATTCATTACCTaatgtttttcgaaaactcGACACAGTCTT
CTTACTAGGTATTGTACCGTTACCCTTTCCCTTCTCTGCAGGTGCGAGGA
TTGTGACAAGGAATTCAAATTCGTCAAAGAATATCATTTCCACTGCGCTG
TCAACCACAAAGGATCGAAATTGATGATGGAAGAAGGGCGTGAAGAGGAA
GTGTTGGCAGACTTTGAACCCACCATGGTCTACAAGTGTCGTCACTGCGA
GAAATCCTTCCGTTACGTATCTCTACTGAAGAAACACGCGGAAACGCATA
AACTAGACAGAGGCGATGGAGAACACGATAAAGGAAACGAATCggagaaa
gaaaatcaacaagaaGGAGGAGTGCAGGATGTCGATGAACCAATGAATGA
TGAGGATTGCGAGAAAGTCAGTATGAAGGAGAGCGCCGCCGATGAAAATG
TAGTTGAAGAAATTCACATTGCAGCAACGGAGGAGGGTGAGCCACAAACA
GCTTTGATTGAACAGGGCGACGACCAGGTGACCGTCTGTTACGTCACTCA
CAAAGACGTGCTTGATAATGTGGAGGAATTGAACATTTTGGCGTGTGGCC
ACTGTTTGGCTGGCTTTACTGACGAAGAACAACTCAATCAACACGTGTTG
AGTGAACATTCTGATTTGATTTTGCAATCCGAAGAAATCGCAGTCGAACA
TGTGACAACTGCTGAAACGAGCGAGGAGCATGACGGGACTCAACAAGTAC
AATTGCATGATGGGAGCTTGCACGTGTTGGATGGTTCAGAAGGAATGAAA
ATCATTCAGTTAGCGTTGGAAGCCAAA Coding sequence (CDS) from alignment at sc0000062_pilon:515868..521694+ >XLOC_042192 ID=XLOC_042192|Name=XLOC_042192|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4452bp|location=Sequence derived from alignment at sc0000062_pilon:515868..521694+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCAGACCAAGTAGTGACAGCAGCAGCAATGGTGGAACATTTGAACGA
TCACGTCATTGGTAAACTGATTGTGGAAAAATTGAACGAAGAAATTCACA
CTGAAGAAACTATGACTACAGATGGCAGACCAAGTAGTGACAGCAGCAGC
AATGGTGGAACATTTGAACGATCACGTCATTGGTAAACTGATTGTGGAAA
AATTGAACGAAGAAATTCACACTGAAGAAACTATGACTACAGTGGAAGCA
GTAGTTGTAGGTGAACAAGCAGCAGAATTAGTCATCCAACACCAACCTCA
AGAATCCATACCGCCCGATGAGATACCGCCCACGCAGATTGTAAGCGAAG
AACAGATGATCGTATCCACCGTAGAAGGAGGAGAGAAAGAGAACGAAGAA
GCGGTCGAACAGGATGACGAACGGCATATTGAAATCACCATCGGTGACCC
AGTGGCCGACAAAGTCATCGATAGTTGTGTTGGAACTTGGAAGCAGTAGT
TGTAGGTGAACAAGCAGCAGAATTAGTCATCCAACACCAACCTCAAGAAT
CCATACCGCCCGATGAGATACCGCCCACGCAGATTGTAAGCGAAGAACAG
ATGATCGTATCCACCGTAGAAGGAGGAGAGAAAGAGAACGAAGAAGCGGT
CGAACAGGATGACGAACGGCATATTGAAATCACCATCGGTGACCCAGTGG
CCGACAAAGTCATCGATAGTTGTGTTGGAACTGACAACAGAAGATATTAC
AAGGTGAAGTGGCAAGCCACGTGGGAGCCTGAGGACGAGCTTCTGGTCAA
ATATCAAAACCTGATCGAAGATTACTGGAAGGTGACGGTTCAAGAACAGA
ATGAATTGGAACACAAGAATCTCATTAATAACCTCTTCGAAAATGTAACG
GACAACAGAAGATATTACAAGGTGAAGTGGCAAGCCACGTGGGAGCCTGA
GGACGAGCTTCTGGTCAAATATCAAAACCTGATCGAAGATTACTGGAAGG
TGACGGTTCAAGAACAGAATGAATTGGAACACAAGAATCTCATTAATAAC
CTCTTCGAAAATGTAACGCCAGGCGAAGGAAACGAAGATATCAAACCAAA
CATAGACAAACTGAATGTTGGAAAGCGTAGCGGTGAAGCGGAGACTTCAG
GCAGCGGCGGTGGAGGTGAACAGATGGTTCAAGGTATCAATTCCAGGCGA
AGGAAACGAAGATATCAAACCAAACATAGACAAACTGAATGTTGGAAAGC
GTAGCGGTGAAGCGGAGACTTCAGGCAGCGGCGGTGGAGGTGAACAGATG
GTTCAAGGTATCAATTATACAGATGCGGATGGCCACGAAAACGCATTGAC
TGCTTACAAACAAGATACAGATGCGGATGGCCACGAAAACGCATTGACTG
CTTACAAACAAGTGAATTCACCAGAACACAAGATCAGCGACGAGCCAGTC
CTCATTACCGACAGCAAACCACCTCCGTTGAAAAACGTAGAGAAAGTGAC
AGATGAGTTACCTCACAAATGTGACGAATGTACTCGCTCCTATTCTACTC
TTCGAAAACTGAAAGATCATCAACGCAAATTACATACAAACTTAGTGAAT
TCACCAGAACACAAGATCAGCGACGAGCCAGTCCTCATTACCGACAGCAA
ACCACCTCCGTTGAAAAACGTAGAGAAAGTGACAGATGAGTTACCTCACA
AATGTGACGAATGTACTCGCTCCTATTCTACTCTTCGAAAACTGAAAGAT
CATCAACGCAAATTACATACAAACTTAGGATTATATCAATGTTCTGAATG
TCCGAAGCAGTTCAACACGAAGCGTTCTTTACAGATGCATATGAACAGAC
ACACGGGCATCGGTCCACACGCATGTCCTGGTTGTGGGAAACGTTACATG
ACACCTCAAGAACTTGTCTTTCACAAAAGGATTATATCAATGTTCTGAAT
GTCCGAAGCAGTTCAACACGAAGCGTTCTTTACAGATGCATATGAACAGA
CACACGGGCATCGGTCCACACGCATGTCCTGGTTGTGGGAAACGTTACAT
GACACCTCAAGAACTTGTCTTTCACAAAAGATCATGCAATGGTTTGGTTG
ATAAGGAGTTCACTTGTGAGCAATGCGGTAAACGGTTCGCCACCAAGACA
CATTTAGTGTTCCACATGAAGATTCATCTACCAGATGATGAGAAGCCCTT
CAAATGTCAATTCTGTACTCGAACCTTCGCTTATAATCATGATTGCGTGC
ACCATATGAGATCATGCAATGGTTTGGTTGATAAGGAGTTCACTTGTGAG
CAATGCGGTAAACGGTTCGCCACCAAGACACATTTAGTGTTCCACATGAA
GATTCATCTACCAGATGATGAGAAGCCCTTCAAATGTCAATTCTGTACTC
GAACCTTCGCTTATAATCATGATTGCGTGCACCATATGAGGTTACATCTT
GGTGAAAAGCCTTACAAGTGTACGGAATGCGACAAAGCTTTCCACCGGAA
GTCTTACCTTACGGAACACATGTTTGTACATACGGGAATCTCCAAATATC
AGTGTGAAACTTGCAAGGTTACATCTTGGTGAAAAGCCTTACAAGTGTAC
GGAATGCGACAAAGCTTTCCACCGGAAGTCTTACCTTACGGAACACATGT
TTGTACATACGGGAATCTCCAAATATCAGTGTGAAACTTGCAAGCAATAC
TTTCGGACACAACAGATGTTGCAAACGCACGTCAAGAACATTCACATTCT
CAAGAAGACAGCTAAAACACCTCGCGCACGGAATGCAAGACCCAACGATA
AATCACCAGCCAAAAGAAATACTAAAAAGAAATATAGCAATACTTTCGGA
CACAACAGATGTTGCAAACGCACGTCAAGAACATTCACATTCTCAAGAAG
ACAGCTAAAACACCTCGCGCACGGAATGCAAGACCCAACGATAAATCACC
AGCCAAAAGAAATACTAAAAAGAAATATAGGTGCGAGGATTGTGACAAGG
AATTCAAATTCGTCAAAGAATATCATTTCCACTGCGCTGTCAACCACAAA
GGATCGAAATTGATGATGGAAGAAGGGCGTGAAGAGGAAGTGTTGGCAGA
CTTTGAACCCACCATGGTCTACAAGTGTCGTCACTGCGAGAAATCCTTCC
GTTACGTATCTCTACTGAAGAAACACGCGGAAACGCATAAACTAGACAGA
GGCGATGGAGAACACGATAAAGGAAACGAATCggagaaagaaaatcaaca
agaaGGAGGAGTGCAGGATGTCGATGAACCAATGAATGATGAGGATTGCG
AGAAAGTCAGTATGAAGGAGAGCGCCGCCGATGAAAATGTAGTTGAAGAA
ATTCACATTGCAGCAACGGAGGAGGGTGAGCCACAAACAGCTTTGATTGA
ACAGGGCGACGACCAGGTGACCGTCTGTTACGTCACTCACAAAGACGTGC
TTGATAATGTGGAGGAATTGAACATTTTGGCGTGTGGCCACTGTTTGGCT
GGCTTTACTGACGAAGAACAACTCAATCAACACGTGTTGAGTGAACATTC
TGATTTGATTTTGCAATCCGAAGAAATCGCAGTCGAACATGTGACAACTG
CTGAAACGAGCGAGGAGCATGACGGGACTCAACAAGTACAATTGCATGAT
GGGAGCTTGCACGTGTTGGATGGTTCAGAAGGAATGAAAATCATTCAGTT
AGCGTTGGAAGCCAAAGTGCGAGGATTGTGACAAGGAATTCAAATTCGTC
AAAGAATATCATTTCCACTGCGCTGTCAACCACAAAGGATCGAAATTGAT
GATGGAAGAAGGGCGTGAAGAGGAAGTGTTGGCAGACTTTGAACCCACCA
TGGTCTACAAGTGTCGTCACTGCGAGAAATCCTTCCGTTACGTATCTCTA
CTGAAGAAACACGCGGAAACGCATAAACTAGACAGAGGCGATGGAGAACA
CGATAAAGGAAACGAATCggagaaagaaaatcaacaagaaGGAGGAGTGC
AGGATGTCGATGAACCAATGAATGATGAGGATTGCGAGAAAGTCAGTATG
AAGGAGAGCGCCGCCGATGAAAATGTAGTTGAAGAAATTCACATTGCAGC
AACGGAGGAGGGTGAGCCACAAACAGCTTTGATTGAACAGGGCGACGACC
AGGTGACCGTCTGTTACGTCACTCACAAAGACGTGCTTGATAATGTGGAG
GAATTGAACATTTTGGCGTGTGGCCACTGTTTGGCTGGCTTTACTGACGA
AGAACAACTCAATCAACACGTGTTGAGTGAACATTCTGATTTGATTTTGC
AATCCGAAGAAATCGCAGTCGAACATGTGACAACTGCTGAAACGAGCGAG
GAGCATGACGGGACTCAACAAGTACAATTGCATGATGGGAGCTTGCACGT
GTTGGATGGTTCAGAAGGAATGAAAATCATTCAGTTAGCGTTGGAAGCCA
AA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000062_pilon | genome | sc0000062_pilon:515868..521694 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1504-2238:5093 |
| Aaloc | 1360-1500:4664 |
| Aaloc | 1234-1359:4257 |
| Aaloc | 1054-1230:3738 |
| Aaloc | 904-1050:3206 |
| Aaloc | 721-900:2379 |
| Aaloc | 673-717:2052 |
| Aaloc | 622-669:1509 |
| Aaloc | 544-618:1434 |
| Aaloc | 376-543:1074 |
| Aaloc | 133-375:344 |
| Aaloc | 79-129:70 |
| Aaloc | 1-69:1 |
|
