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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000133_pilon:293277..298975+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_042139 ID=XLOC_042139|Name=XLOC_042139|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5699bp|location=Sequence derived from alignment at sc0000133_pilon:293277..298975+ (Clytia hemisphaerica_ch_hm2_pilon)
atgaCAGCAATTATCGTAcgacaaattttccaaaataacgGTGCTGGCCA
AATAACTCAAACGAGTGTGAGTTGAAGAATTTTTGTCGTTGTTTATAAGA
GTGAAAAGCAAGAAATTCTTCAACATTGAACTGTTTTTGAGCATTGTCTG
TTAAATTTCTGTAGCGTgaataaaagaatttttcgtGAAGATGGTATTTG
TTCAGAAGATAGTAAAAAGGGAAATCTAGTTGAAGGAATTCTCATTTCTG
ATGAAATCGGCAATCCATAGTCTAGAATTATCTATCAAATTAAAGTAGAG
AATTCTAAAGTCCGAagcttttcagaaaaataaattgGGTGGTTGTCTTG
TTTTGCTCCTGGAAAGAATTGGTCGAATTGCCCAGATGCAATGTGTATAT
TTGTGCTGTTGATCACATTAAATACATAATTCTCCATTCTTTCTCATCTT
AGACGACAGCAATGCAAGGAGGCTTCCCAAGCCAACCAGCCATCCGAAGC
AACAATAGAGAACCTTTATCATCCAAAGTCAAGAAATGTCAATGCGATAT
GGACTGGTTTTTCAAATGGTACAACAAACAAAAATTCCTTATCAATCATG
AAGGTAGATTCAAGGTGATGTGGGATTGGTTGGTTTTGTTACTGGTCATT
TTTACAGCCATTCAGGTCCCGTTCTACGCCACATTCACCAGAACAGCTCC
AGTGATATTTGACATAGGGGATGGTGGGCACAGTGAAGCTATTGTCATCT
TAACCACCATGGTAGATCTCATTTTTATCGTCGACATCTTCTTGAATTTT
CGTACAACGTACGTTCGATCAAGCTCCGAACTCAAAGAACAAGATTCAAA
AAAGATAGCAAAACATTATTTGAAGACATGGTTTCTGATCGATCTGTTGG
CGGCCATACCTTTTGATCTCATGGTACACGATCACGAAAATAATTCAAAC
AGTAATGTAAGTTTTTCTTCTACGTTCATTTTTTCTGTGAAACAACATTA
ACATCGACGAAAAGTTGTTAAAAACGGTAAATAAATTTGAATGAATATCT
TGGTGCAGTTAGAAGTCCGTAACCGAGGAGTTAGGATCAATCGGTAGACT
TTTTATCCCGTGAGGTTTGATCCCTTCAAATGTTTACTCTATACTAACTT
ATATTTAGTATAAATAGAGACCGAGACTTCAACCTAGACTCCACCATAAA
AACCTTCTAAATAATCAAATGAATCTGTTCTTCACTTTCAGGCATCGACA
GTAATCGGGTTACTGAAATCTGCTCGTTTGTTACGTTTGTTTCGGGTTGC
ACGGAAACTGGATCGATATTCAGAGCATGGATACGCCGTATTGTTCCTTC
TGATGTGCTTTTTCATGCTGATCTCTCATTGGTTGGCTTGTGTGTGGAAC
TTCATTGCTACACACGAAGAACACATAGATGATAGTTGGGTGAGACGGCT
GAACGATGATATTTACCCTCCATTGAAAGAGCAAATTAAATGTTGCTGTA
ATCGAATCGCGCAGAACGTTCTCATGAATAAATCACTGATCAATACCACC
ATCAGTAATTTCACCAACATAGCGGGCACTGTTAAACAATTACCGCCCAT
CCAGTTAGGCGTTGGTGAACGTTACATCGCATCCTTGTATTTCATCGTTT
CATCATTGACGGGTGTTGGTTTTGGCAACATTGCAGCCACCACAGTGTAC
GAACAAACGTTCAGTGTTATACTCATGATGCTTGGAAGTGCGTAGTTTCT
TATGATGATTTtactttgtttcttttctttctaagtcattcatttccaaa
ggggcatttttgaacgttttcgtcgttttttggttttagcgactacgagt
tttttggtattagtttATGTGGCGTACTGTATAACCAGGACCCGGACCGG
ACCCTGGACCCTAAGAAACCAGGACCCCGGACCTTTACGAAAACCTGGAC
CCCTCctaaattttcgagaaaacacggaccccctcgtaaattttcgagaa
aacacGGACCCCATCtcaaattttcgagaaaacacGGACCCCTCACAAAA
TTTTGCGGATCCATTCTCCTCAATTacgaaattttcaagaaaactcAGGA
TAGTATAGAAGTAGAACTTGTTAGGGtttctaaataattttttacgctgt
ttgagctttcttagacaaaagattacaaagaaaactttcataCTTTGAGC
CGAATCAATGTTCTGACTTAAAAATTCGAGGCCAAAAAGAAACAACAAGT
CGAAGTCACTGTAAGCATAAATTGAGgctgaaaattagattttactACAT
CCTCGACTTGATTTTCccatgtgcttataaaaaagagtgagATGATGAGA
TGATTAGATAATTTGACGGAAATATTCGATGGAAGAATTTGATTCATTCT
ATTCAAACACGGCCAATTGATATTTGGGAATTTGAGGTTTAAATTATGAG
CTGTTTATATGGTAAATGTTTATGAAAATAAACTGGAAAATAAATGGATT
CgtgttttctcgaaaatttacGGAGGGGTCCAGGTTCTCGTCAAAATTGG
AGGGGGTCTgtgtttttgccaaaatttaaggggggggggtccgtgttttc
gccaaaatttgAGGGGTCCGTGTTTTCGCAAAAAATTGAGGGGGTAcgtt
tttttgctaaaatttgaggggggtccacgttttcgccaaaatttgAGGGA
GCATGtgttttcgccaaaatttgaggggatatATGTTTTTGCAAAAACTT
GAGGGGTCCGtgttttcgccaaaatttgAGGGGTCCGtgttttcgccaaa
atttgAGGGTGTCCGTGTTTTCGCAAAAAATTGAGGGGGTAcgttttttt
gctaaaatttgacGGGGTCCacgttttcaccaaaatttgaagGAGTATGt
gttttcgccaaaatttgagggggggggggtccgtgttttctcgaaaattt
acGAGGGGTCCGGGTTTTCGTAAAAGTCCGGGGTCCGGATTTTCTTAGGG
TCCAGGGTCCGGTCGAGGTCCTGGTTGTACAGTACGCCAGTTTATGTATG
TATCACTTTGcatcaaaaataacattttccgAAAAAAGATTTGACCGGCA
GACTGCACACTGATGTGCCAGTGTTTCAAAGATTCGGGCATTACAAATTA
AAGTTAGTGTGAATCACGGTATGAAACAGAAGACCTTGAAGTATTTTTCC
AGTAGGATTCTATTTAATGGTCCTGATACCTTTCCATTCTAGCACTGTTG
TATGCATGCATCTTCGGGAACATGGTGGCAATCGTGCAACGATCTTACTC
ACGACAAACGTTATACCATAACAACATGACGAGCATGCGAGAGTTCTTAC
ACTTCTACAAAATACCGCATGATCTACAGAACAACATCAATAACTACACA
AGGCGTGAATGGCTTTTATCACCTGCTCTCGAAGCTAAAACTGTAAGTAC
TGGCAGGTGAAATAAGTACACAACACGTTAATATAAGTGTAAGACAAATT
TAAGGAGGTTTTGTTATTACAAATTGTAGTAAatcagtttttaacttttg
atccaGCTTTTAGTTTTACTTAATCAAATGGGTGTAAAGAAAAGTTAGTC
CAAGGTGATGGTCTGTGCTTTGAAAGCTTTTAGAATAAGCTCTCTAACCA
CGTATCATGTATCACGTATTGTTGAAACCCAGGTGAAAAcctattttcat
tatttttcccGATTGTTAAAGATAAGATGCGATAAAATCTTTTCATCAAT
AAAAGATGTTATTTAACgctcattaaaaattttaatcttAGTAAGGAAAA
GAGGCCAATCTCCATTCTCGTTTTTACAGATGTTGAGTAACTTTCCCGAA
TGTTTACAAGCCGATTTGACGTACGAACTATACCAGCacgtgtttttcaa
aaattcggCTTTCCGTGAAGCAACGTTGAGCTGCATGAGAGCTTTATCCA
TGAAGATGCACACGATGACGTTACAAGCCAATTTATGTATCTTAAGACGA
GGTGATGAGATCGATAAATTATACATCATCGAGAAAGGAGAGATCGAGGT
ACAAATTAAAAACCCTGAAACAGGTGACAGTCAACATGGCAACAAAATCA
AATTAGGTAGGCTTTGAATTTGTACTCATTCATTGTTACACCACTAGGGG
GGATCGGGTGTGAGCTTTCTAGGGTTGAATCACGTATAGGGTTTAAAAAG
TCAATGAAAACACTTGTGATATTTTTATCCTCTTCATATATCAAGATTAA
ATCGAACCCAAAAATGCGGCGATCGGGTGCGAGTATCACATTCCCATCTA
AGTAAAAAGAGAGCACCCTggtctcaaatatttttgaatttcacaGTCTG
AtttttttCTACGCATTTTTCAGGGAAAGACAAAACGTTTGGATATGACG
TCAAAATGATGCCACGCAAACCGAAATCGAATTCGAACGTACGAACGACC
ATTCTATCAGAGATCCATTATATTGACAAGAATGATTTGTTAGAAATTTT
CGACACTTATCCAAAGTTTGCAGAGAATTTCCGCCATCATTATTCGCATG
GATTTGATCTCAATGACGTGGAAGAGGTAAATAACTACTTTTTTAAATAC
TGAAGACTTAAAATGGTTTGATACACTATCAAAATTCTTGCTAATGATGT
ACCTTATTGATTAAGATTAAAGTGTCACATGACTGTTTCTCTGGTTCCTG
AAACGTTTTAAAGGCAAGACTTTCGTCACGAGCCGAAGACAACCAGCAAA
AGCTCTCAAAATACCTTAACCGAATCTTTATACTAATCGAAAAGTAAGCA
GTAAAGTCTTTTTCAAGCCCATAACTTTACAAAGTGTAGCAAAATCAACG
AGATTTAAAATGAGACATCTATTTTACTCTTTGCAGGAGGGTTATTTTAC
GACGCCAGTACGAAAACAAAAAGTGCACTCCAACCTCTTAGCAAGACAAG
CAGCACCCATTATCAACAGAATCCATCGATTCAGCAAACGTCGCAAATCG
CACACGTTTAACGGTGAGATTGCCAAAGTACGTTCCGAAAACTGTCTACT
TGATCCTCGATACAGTTTGAAAACGACTTTCTCAGAACCTGAAGAAAACT
TGACGATGAGTAACGACGAACTTTCATCTTCACGAAAACCGAAGACGTCG
ATTGGTCAGTTCAAGAAACGCGCTCTGCAACAGACGATGAGTGATACCAG
TTCAGTAGCCAGTAATAGCTCCACTATTCATTTGAGGCCGTTAACACCAC
ACGTTACGCCACGTCGTAAACTTACTGCTCCGGCAACTAGTCCTTTCTTA
TCACCAACCAAACTAGACATTGAGACACGTCTCGATAACTTAGAAAATAA
AGTCGAAGACGTCAATAAAAAGAACGAACAAAAATTGAATCaaattttaa
gacttttaaCGGAGTTGACATACGATACACGTCAGAAATCGCCGACGATC
AGCAGCAATCAGTCGGAAGAATCGCTTAATCATAAGAATGTTAAAGAGGA
CGAAACGTTGAACCATTTTCTTGATACGTACACAACATCTTCAGCAGAAC
ACCATAAAGACAATAACATCAATTTCACAATGAATGTAGTGGACTGTGGT
GACGACTTGGTAGATTGCAACGAAACAACGCCTTGGTTACAAGAAAGTCA
AGGATAGAAAGAAATGTGTAGTCTTGGAGATAGGATAGAGAAAAAGTGA Coding sequence (CDS) from alignment at sc0000133_pilon:293277..298975+ >XLOC_042139 ID=XLOC_042139|Name=XLOC_042139|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5118bp|location=Sequence derived from alignment at sc0000133_pilon:293277..298975+ (Clytia hemisphaerica_ch_hm2_pilon)
atgaCAGCAATTATCGTAcgacaaattttccaaaataacgGTGCTGGCCA
AATAACTCAAACGAGTatgaCAGCAATTATCGTAcgacaaattttccaaa
ataacgGTGCTGGCCAAATAACTCAAACGAGTACGACAGCAATGCAAGGA
GGCTTCCCAAGCCAACCAGCCATCCGAAGCAACAATAGAGAACCTTTATC
ATCCAAAGTCAAGAAATGTCAATGCGATATGGACTGGTTTTTCAAATGGT
ACAACAAACAAAAATTCCTTATCAATCATGAAGGTAGATTCAAGGTGATG
TGGGATTGGTTGGTTTTGTTACTGGTCATTTTTACAGCCATTCAGGTCCC
GTTCTACGCCACATTCACCAGAACAGCTCCAGTGATATTTGACATAGGGG
ATGGTGGGCACAGTGAAGCTATTGTCATCTTAACCACCATGGTAGATCTC
ATTTTTATCGTCGACATCTTCTTGAATTTTCGTACAACGTACGTTCGATC
AAGCTCCGAACTCAAAGAACAAGATTCAAAAAAGATAGCAAAACATTATT
TGAAGACATGGTTTCTGATCGATCTGTTGGCGGCCATACCTTTTGATCTC
ATGGTACACGATCACGAAAATAATTCAAACAGTAATACGACAGCAATGCA
AGGAGGCTTCCCAAGCCAACCAGCCATCCGAAGCAACAATAGAGAACCTT
TATCATCCAAAGTCAAGAAATGTCAATGCGATATGGACTGGTTTTTCAAA
TGGTACAACAAACAAAAATTCCTTATCAATCATGAAGGTAGATTCAAGGT
GATGTGGGATTGGTTGGTTTTGTTACTGGTCATTTTTACAGCCATTCAGG
TCCCGTTCTACGCCACATTCACCAGAACAGCTCCAGTGATATTTGACATA
GGGGATGGTGGGCACAGTGAAGCTATTGTCATCTTAACCACCATGGTAGA
TCTCATTTTTATCGTCGACATCTTCTTGAATTTTCGTACAACGTACGTTC
GATCAAGCTCCGAACTCAAAGAACAAGATTCAAAAAAGATAGCAAAACAT
TATTTGAAGACATGGTTTCTGATCGATCTGTTGGCGGCCATACCTTTTGA
TCTCATGGTACACGATCACGAAAATAATTCAAACAGTAATGCATCGACAG
TAATCGGGTTACTGAAATCTGCTCGTTTGTTACGTTTGTTTCGGGTTGCA
CGGAAACTGGATCGATATTCAGAGCATGGATACGCCGTATTGTTCCTTCT
GATGTGCTTTTTCATGCTGATCTCTCATTGGTTGGCTTGTGTGTGGAACT
TCATTGCTACACACGAAGAACACATAGATGATAGTTGGGTGAGACGGCTG
AACGATGATATTTACCCTCCATTGAAAGAGCAAATTAAATGTTGCTGTAA
TCGAATCGCGCAGAACGTTCTCATGAATAAATCACTGATCAATACCACCA
TCAGTAATTTCACCAACATAGCGGGCACTGTTAAACAATTACCGCCCATC
CAGTTAGGCGTTGGTGAACGTTACATCGCATCCTTGTATTTCATCGTTTC
ATCATTGACGGGTGTTGGTTTTGGCAACATTGCAGCCACCACAGTGTACG
AACAAACGTTCAGTGTTATACTCATGATGCTTGGAAGCATCGACAGTAAT
CGGGTTACTGAAATCTGCTCGTTTGTTACGTTTGTTTCGGGTTGCACGGA
AACTGGATCGATATTCAGAGCATGGATACGCCGTATTGTTCCTTCTGATG
TGCTTTTTCATGCTGATCTCTCATTGGTTGGCTTGTGTGTGGAACTTCAT
TGCTACACACGAAGAACACATAGATGATAGTTGGGTGAGACGGCTGAACG
ATGATATTTACCCTCCATTGAAAGAGCAAATTAAATGTTGCTGTAATCGA
ATCGCGCAGAACGTTCTCATGAATAAATCACTGATCAATACCACCATCAG
TAATTTCACCAACATAGCGGGCACTGTTAAACAATTACCGCCCATCCAGT
TAGGCGTTGGTGAACGTTACATCGCATCCTTGTATTTCATCGTTTCATCA
TTGACGGGTGTTGGTTTTGGCAACATTGCAGCCACCACAGTGTACGAACA
AACGTTCAGTGTTATACTCATGATGCTTGGAACACTGTTGTATGCATGCA
TCTTCGGGAACATGGTGGCAATCGTGCAACGATCTTACTCACGACAAACG
TTATACCATAACAACATGACGAGCATGCGAGAGTTCTTACACTTCTACAA
AATACCGCATGATCTACAGAACAACATCAATAACTACACAAGGCGTGAAT
GGCTTTTATCACCTGCTCTCGAAGCTAAAACTCACTGTTGTATGCATGCA
TCTTCGGGAACATGGTGGCAATCGTGCAACGATCTTACTCACGACAAACG
TTATACCATAACAACATGACGAGCATGCGAGAGTTCTTACACTTCTACAA
AATACCGCATGATCTACAGAACAACATCAATAACTACACAAGGCGTGAAT
GGCTTTTATCACCTGCTCTCGAAGCTAAAACTATGTTGAGTAACTTTCCC
GAATGTTTACAAGCCGATTTGACGTACGAACTATACCAGCacgtgttttt
caaaaattcggCTTTCCGTGAAGCAACGTTGAGCTGCATGAGAGCTTTAT
CCATGAAGATGCACACGATGACGTTACAAGCCAATTTATGTATCTTAAGA
CGAGGTGATGAGATCGATAAATTATACATCATCGAGAAAGGAGAGATCGA
GGTACAAATTAAAAACCCTGAAACAGGTGACAGTCAACATGGCAACAAAA
TCAAATTAGATGTTGAGTAACTTTCCCGAATGTTTACAAGCCGATTTGAC
GTACGAACTATACCAGCacgtgtttttcaaaaattcggCTTTCCGTGAAG
CAACGTTGAGCTGCATGAGAGCTTTATCCATGAAGATGCACACGATGACG
TTACAAGCCAATTTATGTATCTTAAGACGAGGTGATGAGATCGATAAATT
ATACATCATCGAGAAAGGAGAGATCGAGGTACAAATTAAAAACCCTGAAA
CAGGTGACAGTCAACATGGCAACAAAATCAAATTAGGGAAAGACAAAACG
TTTGGATATGACGTCAAAATGATGCCACGCAAACCGAAATCGAATTCGAA
CGTACGAACGACCATTCTATCAGAGATCCATTATATTGACAAGAATGATT
TGTTAGAAATTTTCGACACTTATCCAAAGTTTGCAGAGAATTTCCGCCAT
CATTATTCGCATGGATTTGATCTCAATGACGTGGAAGAGGGAAAGACAAA
ACGTTTGGATATGACGTCAAAATGATGCCACGCAAACCGAAATCGAATTC
GAACGTACGAACGACCATTCTATCAGAGATCCATTATATTGACAAGAATG
ATTTGTTAGAAATTTTCGACACTTATCCAAAGTTTGCAGAGAATTTCCGC
CATCATTATTCGCATGGATTTGATCTCAATGACGTGGAAGAGGAGGGTTA
TTTTACGACGCCAGTACGAAAACAAAAAGTGCACTCCAACCTCTTAGCAA
GACAAGCAGCACCCATTATCAACAGAATCCATCGATTCAGCAAACGTCGC
AAATCGCACACGTTTAACGGTGAGATTGCCAAAGTACGTTCCGAAAACTG
TCTACTTGATCCTCGATACAGTTTGAAAACGACTTTCTCAGAACCTGAAG
AAAACTTGACGATGAGTAACGACGAACTTTCATCTTCACGAAAACCGAAG
ACGTCGATTGGTCAGTTCAAGAAACGCGCTCTGCAACAGACGATGAGTGA
TACCAGTTCAGTAGCCAGTAATAGCTCCACTATTCATTTGAGGCCGTTAA
CACCACACGTTACGCCACGTCGTAAACTTACTGCTCCGGCAACTAGTCCT
TTCTTATCACCAACCAAACTAGACATTGAGACACGTCTCGATAACTTAGA
AAATAAAGTCGAAGACGTCAATAAAAAGAACGAACAAAAATTGAATCaaa
ttttaagacttttaaCGGAGTTGACATACGATACACGTCAGAAATCGCCG
ACGATCAGCAGCAATCAGTCGGAAGAATCGCTTAATCATAAGAATGTTAA
AGAGGACGAAACGTTGAACCATTTTCTTGATACGTACACAACATCTTCAG
CAGAACACCATAAAGACAATAACATCAATTTCACAATGAATGTAGTGGAC
TGTGGTGACGACTTGGTAGATTGCAACGAAACAACGCCTTGGTTACAAGA
AAGTCAAGGATAGAAAGAAATGTGTAGTCTTGGAGATAGGATAGAGAAAA
AGTGAGAGGGTTATTTTACGACGCCAGTACGAAAACAAAAAGTGCACTCC
AACCTCTTAGCAAGACAAGCAGCACCCATTATCAACAGAATCCATCGATT
CAGCAAACGTCGCAAATCGCACACGTTTAACGGTGAGATTGCCAAAGTAC
GTTCCGAAAACTGTCTACTTGATCCTCGATACAGTTTGAAAACGACTTTC
TCAGAACCTGAAGAAAACTTGACGATGAGTAACGACGAACTTTCATCTTC
ACGAAAACCGAAGACGTCGATTGGTCAGTTCAAGAAACGCGCTCTGCAAC
AGACGATGAGTGATACCAGTTCAGTAGCCAGTAATAGCTCCACTATTCAT
TTGAGGCCGTTAACACCACACGTTACGCCACGTCGTAAACTTACTGCTCC
GGCAACTAGTCCTTTCTTATCACCAACCAAACTAGACATTGAGACACGTC
TCGATAACTTAGAAAATAAAGTCGAAGACGTCAATAAAAAGAACGAACAA
AAATTGAATCaaattttaagacttttaaCGGAGTTGACATACGATACACG
TCAGAAATCGCCGACGATCAGCAGCAATCAGTCGGAAGAATCGCTTAATC
ATAAGAATGTTAAAGAGGACGAAACGTTGAACCATTTTCTTGATACGTAC
ACAACATCTTCAGCAGAACACCATAAAGACAATAACATCAATTTCACAAT
GAATGTAGTGGACTGTGGTGACGACTTGGTAGATTGCAACGAAACAACGC
CTTGGTTACAAGAAAGTCAAGGATAGAAAGAAATGTGTAGTCTTGGAGAT
AGGATAGAGAAAAAGTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000133_pilon | genome | sc0000133_pilon:293277..298975 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 2512-2550:5661 |
| Aaloc | 1747-2511:4887 |
| Aaloc | 1546-1746:4376 |
| Aaloc | 1267-1542:3830 |
| Aaloc | 1069-1266:3245 |
| Aaloc | 571-1065:1242 |
| Aaloc | 67-570:453 |
| Aaloc | 1-66:1 |
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