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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000103_pilon:1080972..1083437+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_041952 ID=XLOC_041952|Name=XLOC_041952|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2466bp|location=Sequence derived from alignment at sc0000103_pilon:1080972..1083437+ (Clytia hemisphaerica_ch_hm2_pilon)
aagaaaaaaacaacgatggCGTCTATATGTCAAAAAATACTGTTACTTGG
GCCAAGTCGAATTGATCCTACAAAATGTCATCCAGGAAGTTCGTTATATG
CACAAATAAAACGAAATGGTGAAATGACATTGCAGCGTCAACAAAGACAA
TTTAATTTGGGGAATTCGGAAACATTCTCTGATCCTATCATAGCAGCCGA
CTATCTTCTTGAAAGGGAATACGGCGAAACAGCACTTTTTGACACTACTC
AACATGGAGCTGTCTTTATACCTCCAACGTTTATGTCGTACCAGTATAAA
AAGAAATCGACTGTTGCAGTTCTTGATTATGATGTaaaaaaaGACATCGA
AAGACTTTTGCATAATTTGTTGCACCATTCACCGAATTATTGGTTCACAA
CTGATTTGCGAGATTTTATAAGCTCGCAAGGCTTTGGTGATACGATTGAT
CAAAAGTATTTCAGTAAATGGATCCTGAATCTTAAAATTAAGTATCTAAT
TATGCAAGAACTCAATACAGATGAAGTTTGCTTACCACCAATAACTCTTG
AGCCTGACGTATTTATAAAAGGTTGCATCCAAgaaatttgctcgaaatca
aTTAAAACATCAATGATAATCCTGTTGGGTGAATATTCAAACATCCCATT
TAAAAGACTATTAAGGCAGAAAGTTGACGAAAACCCTCCAACTGATTCCA
ATCTTCGATGGCTTTTTGACTTAGAGATATCAGAGCTAGgagaaaaagtt
caaaatgaatTCTATGATAAACTTTCATCATTACAGGATGATGATGTTCT
CAGTGACACAGTTGTTCTTTCTTCGATCGGTTTTATAACAAACGTTCGAA
ATAGGATGCAACAGgaattggattttttcattaTATCATGGCCACGAAAG
CTAATTATCTGCATAGAATCGAAACGTACTATTACTGACAGGATTTTCGA
GCAGCTGGAAATGCATCAATTTTTGTTGGAAACAAAATTTGGCGACCAAC
TTGGACATGGATGGACCTTTTTCCCAGttattttgtctgaatttgataaa
ttttcattttccagtcGTCACTACATCACAACCTGCACAGACATCAAATC
ATGGTTGGTGAGTATTTTTCAACATTATCCAGTAGTTCCAATGTGGACTA
CGTTCAATAATACACTTAGCCAAACTAAAGATGTATTAAGATTGATTATT
TTTACATTACATGCATCGAAACACGCACCAATAACCACCACAAATTGGGT
TGAATACATCAATTCAGCCATCGATAATGTAGCTACCAGTGACAATATCC
TGTTTTACTCCAAGGAGCAATTAGCGGTGATGTCCTTAGATAACGATAAA
TACAATAAATTAATTATCACGGCTGGTTGGGGTACTGGAAAAAGTCTTTT
GCTCACCAACAAAGCTATTCAAATGAATTCGGATCCTTATTACAAAGAGA
GAGTTATGTATGTGCTCGCAAACGGACCTTTCAAGGGAATAAATACAATG
CTATATCATCGGTTGAAATTTGATTTGGAGAAGAATCATGGAATCTTTGT
CaaagaaattgctaaaaaagTAAGTCACAAGAGAAGATTCGCGATAAAAA
TTATCTAGtgtcaaaagtatcaaaagtagTACCATGTTAGCAGTATAGTG
CCAGGGGCTACTTCGCGCAAAATAAGAAGGGTCGTGACTTTATTATTGAA
AAATTCATAATAACATTCCTCTAATTAGTACTAACCCTCAAGATCCGTGG
TTATTTGATTAGATGATtagtctattttttttttttaatgttttcctATT
CTATAACCTCTCGTTTCCAATAAGAatttaaagtcattttttgacttgaa
agcTAATCGAGCCTATACCTTACCATCtaaatgtgaaaaaaagtttgttc
tCTTAGAATATGCTtatcaatagacgatatcggctttacgTATTCTCCCC
GAATgcttacccatgatgcattgcgcaaaaaaaaaatcacggacaatatt
gacatactgaatttttttgcgcaatgcatcatgggtaatcattcggggag
aatttcgttaagccgatatcgtccaTTCAGGAAAATTATTCGATGACCCC
CAAATTTCGTTAAAATCATTCCCTTACAAATTCAATTAAAGGGCGTCAGC
TGCGTGTAACGTTTATTCCAAATACTAGCGAATTTCAATGATTGTCATTA
TAGGGTGGAAGCCGTACAGATTTATTGGACGATATCAAACAGCATAAAGC
AAAAGCGATGTTTATAGACGAGTTCGACTTAAGAACGGGAGACGAAACAG
TCAATAAAATATTGGAACTTTGTGACATGGTATGGATAGTCCCATCAACG
GAATCTATGTATTTTAATGACAATTGCAATGGCTTTAAGGAGCAATTTAC
AACTTTAAACCTCTCACACAATTTTAGAAATTGTCGAAGTGTCGTGAAAT
CGACAAAGATGGTTGC Coding sequence (CDS) from alignment at sc0000103_pilon:1080972..1083437+ >XLOC_041952 ID=XLOC_041952|Name=XLOC_041952|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2802bp|location=Sequence derived from alignment at sc0000103_pilon:1080972..1083437+ (Clytia hemisphaerica_ch_hm2_pilon)
aagaaaaaaacaacgatggCGTCTATATGTCAAAAAATACTGTTACTTGG
GCCAAGTCGAATTGATCCTACAAAATGTCATCCAGGAAGTTCGTTATATG
CACAAATAAAACGAAATGGTGAAATGACATTGCAGCGTCAACAAAGACAA
TTTAATTTGGGGAATTCGGAAACATTCTCTGATCCTATCATAGCAGCCGA
CTATCTTCTTGAAAGGGAATACGGCGAAACAGCACTTTTTGACACTACTC
AACATGGAGCTGTCTTTATACCTCCAACGTTTATGTCGTACCAGTATAAA
AAGAAATCGACTGTTGCAGTTCTTGATTATGATGTaaaaaaaGACATCGA
AAGACTTTTGCATAATTTGTTGCACCATTCACCGAATTATTGGTTCACAA
CTGATTTGCGAGATTTTATAAGCTCGCAAGGCTTTGGTGATACGATTGAT
CAAAAGTATTTCAGTAAATGGATCCTGAATCTTAAAATTAAGTATCTAAT
TATGCAAGAACTCAATACAGATGAAGTTTGCTTACCACCAATAACTCTTG
AGCCTGACGTATTTATAAAAGGTTGCATCCAAgaaatttgctcgaaatca
aTTAAAACATCAATGATAATCCTGTTGGGTGAATATTCAAACATCCCATT
TAAAAGACTATTAAGGCAGAAAGTTGACGAAAACCCTCCAACTGATTCCA
ATCTTCGATGGCTTTTTGACTTAGAGATATCAGAGCTAGgagaaaaagtt
caaaatgaatTCTATGATAAACTTTCATCATTACAGGATGATGATGTTCT
CAGTGACACAGTTGTTCTTTCTTCGATCGGTTTTATAACAAACGTTCGAA
ATAGGATGCAACAGgaattggattttttcattaTATCATGGCCACGAAAG
CTAATTATCTGCATAGAATCGAAACGTACTATTACTGACAGGATTTTCGA
GCAGCTGGAAATGCATCAATTTTTGTTGGAAACAAAATTTGGCGACCAAC
TTGGACATGGATGGACCTTTTTCCCAGttattttgtctgaatttgataaa
ttttcattttccagtcGTCACTACATCACAACCTGCACAGACATCAAATC
ATGGTTGaagaaaaaaacaacgatggCGTCTATATGTCAAAAAATACTGT
TACTTGGGCCAAGTCGAATTGATCCTACAAAATGTCATCCAGGAAGTTCG
TTATATGCACAAATAAAACGAAATGGTGAAATGACATTGCAGCGTCAACA
AAGACAATTTAATTTGGGGAATTCGGAAACATTCTCTGATCCTATCATAG
CAGCCGACTATCTTCTTGAAAGGGAATACGGCGAAACAGCACTTTTTGAC
ACTACTCAACATGGAGCTGTCTTTATACCTCCAACGTTTATGTCGTACCA
GTATAAAAAGAAATCGACTGTTGCAGTTCTTGATTATGATGTaaaaaaaG
ACATCGAAAGACTTTTGCATAATTTGTTGCACCATTCACCGAATTATTGG
TTCACAACTGATTTGCGAGATTTTATAAGCTCGCAAGGCTTTGGTGATAC
GATTGATCAAAAGTATTTCAGTAAATGGATCCTGAATCTTAAAATTAAGT
ATCTAATTATGCAAGAACTCAATACAGATGAAGTTTGCTTACCACCAATA
ACTCTTGAGCCTGACGTATTTATAAAAGGTTGCATCCAAgaaatttgctc
gaaatcaaTTAAAACATCAATGATAATCCTGTTGGGTGAATATTCAAACA
TCCCATTTAAAAGACTATTAAGGCAGAAAGTTGACGAAAACCCTCCAACT
GATTCCAATCTTCGATGGCTTTTTGACTTAGAGATATCAGAGCTAGgaga
aaaagttcaaaatgaatTCTATGATAAACTTTCATCATTACAGGATGATG
ATGTTCTCAGTGACACAGTTGTTCTTTCTTCGATCGGTTTTATAACAAAC
GTTCGAAATAGGATGCAACAGgaattggattttttcattaTATCATGGCC
ACGAAAGCTAATTATCTGCATAGAATCGAAACGTACTATTACTGACAGGA
TTTTCGAGCAGCTGGAAATGCATCAATTTTTGTTGGAAACAAAATTTGGC
GACCAACTTGGACATGGATGGACCTTTTTCCCAGttattttgtctgaatt
tgataaattttcattttccagtcGTCACTACATCACAACCTGCACAGACA
TCAAATCATGGTTGGAGCAATTAGCGGTGATGTCCTTAGATAACGATAAA
TACAATAAATTAATTATCACGGCTGGTTGGGGTACTGGAAAAAGTCTTTT
GCTCACCAACAAAGCTATTCAAATGAATTCGGATCCTTATTACAAAGAGA
GAGTTATGTATGTGCTCGCAAACGGACCTTTCAAGGGAATAAATACAATG
CTATATCATCGGTTGAAATTTGATTTGGAGAAGAATCATGGAATCTTTGT
CaaagaaattgctaaaaaaGAGCAATTAGCGGTGATGTCCTTAGATAACG
ATAAATACAATAAATTAATTATCACGGCTGGTTGGGGTACTGGAAAAAGT
CTTTTGCTCACCAACAAAGCTATTCAAATGAATTCGGATCCTTATTACAA
AGAGAGAGTTATGTATGTGCTCGCAAACGGACCTTTCAAGGGAATAAATA
CAATGCTATATCATCGGTTGAAATTTGATTTGGAGAAGAATCATGGAATC
TTTGTCaaagaaattgctaaaaaaAAATTGTCGAAGTGTCGTGAAATCGA
CAAAGATGGTTGCAAATTGTCGAAGTGTCGTGAAATCGACAAAGATGGTT
GC
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000103_pilon | genome | sc0000103_pilon:1080972..1083437 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1378-1416:2428 |
| Aaloc | 1123-1377:1315 |
| Aaloc | 946-1122:931 |
| Aaloc | 13-942:1 |
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