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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000069_pilon:127860..131611+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_041846 ID=XLOC_041846|Name=XLOC_041846|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3752bp|location=Sequence derived from alignment at sc0000069_pilon:127860..131611+ (Clytia hemisphaerica_ch_hm2_pilon)
AAGAAAAAGAATCAGGCATTATTATAATACAcagaaatgtcaaaaattga
cCATCATTATGTTAAACGGTCGATATTGACTCTATTATTGTTATTTGTTG
GATACAACGATGCTCAAAAAGAGCCATTCACCATCACAAGACAACGGCAT
GGTATAAGTGACAAGCTAACATTGATTCCCGATATTTCACGACCCAATTT
GGTTAagaatgaatttgaaaatttagggATGAACAGGCAATGCCTCACTA
ATGGTGTAGCACGAACGATAGCCTCGTCCGTTGGAGGAGCATCTAAATTG
AATTGTTATACTGGTCAAGAATATCAAAGTCAAGGTATGatatagcctgg
agatccatgctatgatttcttattttatatactgatggccaAATATATAG
CACGGTTAgggttgagagtttgaatttcccagatcctaataacggttgaa
aacacagccaatcaaattctactattctttcactggtcacaTTTTCTTAG
AGAAAACGCAAGTTCCCACTGTCAATtatttgaggcagaaatctgcctca
cagctCGTACCGGTCCTGTAaatatcagattataaaaatacaggacaggT
CTCCTGTCTAGGTATGATACTGAATTTTCTTATCGATTTCCATTGAACTG
ACTGATTCGACTTTTCGAAACGATATTCTTGGGGAGAATGACCCCTTCTA
CAGGGATTGGAGTATGTCAGATTGTTTCTTTGGATAAGTTGACAGGATTT
ATAAAACCAAGACTCTCACACTCTCCTATATCATTTGTCCCATGACAAAA
TTCCAAGGATCTATAACTACTTGACTATAATAACGCaaaaaaaaGATACT
GAAGGTAAATAATGCGATCAATAATATCAATAAACGAAgtattacttttt
tgatttATAGAAACGTGTTCGAATGGATTTCTAACAATTGCAGCCGAATC
ACAGACGTCCAGTCTCAGGTGTAAAGTATCAAACATAAACGATATCTACA
TCTGGGATAGGAAGGAGCTTctgaaaatcaatttcaaagatTTGGAAGAT
GAGCTGGAAGCCAAAGATAGTTATTTCGTAAGTGAAATTCATGACATGAA
CGaaggaatatttcaaaatctttgttaGGAGTGTTTTGTTTGAAAGGTGT
CTGcgcattttttttataagaacatattatgAACTTGTtatgaacaagtt
aagaacgttttaaggcttGGTGGACtcaaacacccaatttcttagaaaaa
ttggcaaatacactcacaaaatggtgaatttaagaacatttctaggcttg
aaactcaaaaagttaagaacatccgaaggcttcaaaaattttggatgttc
ttataaaaaaaacgtgtacttctgTGCAGTCGAGGTCgtgttttcattta
tttcatcGATTGCGTCCAGTCTCTTCTGAGTGTCTTTCTCAGCTTGTTTG
AGTACACCAGATATCGTTAGTCTTATACTCGCGAGATGTAACCGAACCAC
GGTGTATCGGCAAGAGCTGTGATTCCCGTATATCATTAGAGTAGGTGACT
ATACTCTATACTACCTCATCGACAAGATAATTCCCTCCCTTTTTTAGCAC
GCATTATGTTGGACGTAAAGCGTGATTTAATATTTCTGGTTTAGGTTTTC
AAGACGAGAAGCAAATGGGACGGATTACTGGTGCAAATATTATATCAATG
TCAATCGACGACAGCAAACCTTGCAAAACAAGAATTGTGTACAGTGATGA
AATTTACTGGCATAAGACACCGTAAGATTTCCAATTAGTTAATAATGCAG
GAAGTTTTAAATGACCTGTCATTCGTCATAACTTTAATCATCATAGTGAT
GACATTGAGTTTGTTAAGCAGATCCCATGGTTGAAGGTTTACCATCgatt
tttatttctgaaaaaCTAAACCGCTGCTGCACCGCATCCCCTTGAATACT
TTAGTCAGAAACAGACAACGTTTAGAATTCTGTCAAGCTGCTATTTAACT
CTCTATTTAGAgataattcttaaaaattttgatatgaaaacaTTGTTGCG
CATTAATCTTTCTAGACATAATAAATCCAGACAAAATGAATAGCCCAAAA
ACAGTACAATCACCCGGCCGTgctgagaatttttttacaagtaaAGACCG
AGATTGCGTTTCAAAAAACAACCCGGGTAAAATCTTTATCTCCGGGAATG
TGTAGAAACTGGTATTTTATACTTTCAGATCCTCTACCAAACAAGATCGA
AGAAATTTTATACGGCGATGATACACGACCATTCACGCCAACGCCTACAA
TACAAACAACAGGGAATAATACAACCATCGTTGTTGCGAAGTCTCAAAAA
CTTAGCAATGGTATACCAACAGGCACAATTATAGGGATTTCTATAGCAAT
TGTTATCGTTTTGGTGGCAGCTTTATTGATCGTAGCTCTCGCGTGCTATC
GAAAAAGGTAATAAAAAACATTATAGGTAACTTCAAAAAAGTATCCAGTG
CTTCATAATATAAATTGTACGCTCTTTTACAATataattataagaacaat
tttatgagaacaagGCTCGATTATGGGTATTCCGGGTAAAACTAATGATA
AATTATAAGAGCAATCCAGAATACAATACAATCAAGAGAATTCAGATGGC
AAAGAAAATGCTGATAAGCATATTCTAAGTCAATAAgtgaacatcttaag
aacatttaaatgAGAACAACTAAGAACATTTACTCtttttttCTAGGAAA
AAATCAAGGAGCGATAAACATAAGGTAAGATTTTAAATGACATAGAGTTG
ATTGTTTCAATAACATGCACATGTATTTTACgaatttagaaacaaaactC
TTTACTTTAAGTTCTTTTATCATATTTAGTGTATCATCTTGTCCAGTTTA
ATTCTATTAAATTTGGTTCTCTCGAAAAGCCTAGTGATTTGCCCAGCTCG
AGACCGAGCTTCATCATCAGTACTTTTGCGTTAGGGGCCAGATTTTCCAA
AAACTACCTTCAGAAGACATCAGAATGTACATGAATCAAAAAGGTGAATA
GTTGAATCCTAGACCGATATTTTGAATCAACAATAGCTTAATAAAGGAAA
CGTCTCTCAACTTTAAATGTGGTTGGCAATCACTTATACTAAGGTAAGCT
GTTATTCATCATCGTTCTAGGATCCTGCGTACAACAGCTTCAAACGGAAC
CGTAAAGAACAGAATCTTAATGGAGAAACATCAACATTATATACagaacc
taaaaattttctaccAGAATACAAAGAGCTAGAGCCAGGAGAGAtccaaa
agaaaaatcaaggCACACTTAACAGTGACACCTACCATTATAGCCGAGCT
CGTGACACTACCCCTCGTCGAATAAATGTTTTAAAAGGCAACCATGACAA
CCACTCAAATGATAGCACCTTAAGTGGTGGTTATAGTACGGTGAAGGATG
TCGATTTAAACCAACCAAAAAATCAGCCGAATGAAGCAGTGATTGGCCAT
CAAATTCCTGGGAATGAATATGCAGTCGCACCAATAGAACATGAAAACTC
TACACAAGACAATAAGATGAATCATAAAGCATTGGACAGTGGTTACAGTT
CAATACGTTTTGACCAGGAGAAAGGTAAAACAGCGTTGGGAAAGGACTCG
aaaaaaaGAACGTTGAATTATTATAGTACACCGATCAGTGATCGACCAGA
GACTCCACCAGAGATTGCAAAATTGTACACCAAAGTCAATAAAAAGAGGT
GA Coding sequence (CDS) from alignment at sc0000069_pilon:127860..131611+ >XLOC_041846 ID=XLOC_041846|Name=XLOC_041846|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2934bp|location=Sequence derived from alignment at sc0000069_pilon:127860..131611+ (Clytia hemisphaerica_ch_hm2_pilon)
AAGAAAAAGAATCAGGCATTATTATAATACAcagaaatgtcaaaaattga
cCATCATTATGTTAAACGGTCGATATTGACTCTATTATTGTTATTTGTTG
GATACAACGATGCTCAAAAAGAGCCATTCACCATCACAAGACAACGGCAT
GGTATAAGTGACAAGCTAACATTGATTCCCGATATTTCACGACCCAATTT
GGTTAagaatgaatttgaaaatttagggATGAACAGGCAATGCCTCACTA
ATGGTGTAGCACGAACGATAGCCTCGTCCGTTGGAGGAGCATCTAAATTG
AATTGTTATACTGGTCAAGAATATCAAAGTCAAGAAGAAAAAGAATCAGG
CATTATTATAATACAcagaaatgtcaaaaattgacCATCATTATGTTAAA
CGGTCGATATTGACTCTATTATTGTTATTTGTTGGATACAACGATGCTCA
AAAAGAGCCATTCACCATCACAAGACAACGGCATGGTATAAGTGACAAGC
TAACATTGATTCCCGATATTTCACGACCCAATTTGGTTAagaatgaattt
gaaaatttagggATGAACAGGCAATGCCTCACTAATGGTGTAGCACGAAC
GATAGCCTCGTCCGTTGGAGGAGCATCTAAATTGAATTGTTATACTGGTC
AAGAATATCAAAGTCAAGAAACGTGTTCGAATGGATTTCTAACAATTGCA
GCCGAATCACAGACGTCCAGTCTCAGGTGTAAAGTATCAAACATAAACGA
TATCTACATCTGGGATAGGAAGGAGCTTctgaaaatcaatttcaaagatT
TGGAAGATGAGCTGGAAGCCAAAGATAGTTATTTCAAACGTGTTCGAATG
GATTTCTAACAATTGCAGCCGAATCACAGACGTCCAGTCTCAGGTGTAAA
GTATCAAACATAAACGATATCTACATCTGGGATAGGAAGGAGCTTctgaa
aatcaatttcaaagatTTGGAAGATGAGCTGGAAGCCAAAGATAGTTATT
TCGTTTTCAAGACGAGAAGCAAATGGGACGGATTACTGGTGCAAATATTA
TATCAATGTCAATCGACGACAGCAAACCTTGCAAAACAAGAATTGTGTAC
AGTGATGAAATTTACTGGCATAAGACACCGTTTTCAAGACGAGAAGCAAA
TGGGACGGATTACTGGTGCAAATATTATATCAATGTCAATCGACGACAGC
AAACCTTGCAAAACAAGAATTGTGTACAGTGATGAAATTTACTGGCATAA
GACACCATCCTCTACCAAACAAGATCGAAGAAATTTTATACGGCGATGAT
ACACGACCATTCACGCCAACGCCTACAATACAAACAACAGGGAATAATAC
AACCATCGTTGTTGCGAAGTCTCAAAAACTTAGCAATGGTATACCAACAG
GCACAATTATAGGGATTTCTATAGCAATTGTTATCGTTTTGGTGGCAGCT
TTATTGATCGTAGCTCTCGCGTGCTATCGAAAAAGATCCTCTACCAAACA
AGATCGAAGAAATTTTATACGGCGATGATACACGACCATTCACGCCAACG
CCTACAATACAAACAACAGGGAATAATACAACCATCGTTGTTGCGAAGTC
TCAAAAACTTAGCAATGGTATACCAACAGGCACAATTATAGGGATTTCTA
TAGCAATTGTTATCGTTTTGGTGGCAGCTTTATTGATCGTAGCTCTCGCG
TGCTATCGAAAAAGGAAAAAATCAAGGAGCGATAAACATAAGGAAAAAAT
CAAGGAGCGATAAACATAAGGATCCTGCGTACAACAGCTTCAAACGGAAC
CGTAAAGAACAGAATCTTAATGGAGAAACATCAACATTATATACagaacc
taaaaattttctaccAGAATACAAAGAGCTAGAGCCAGGAGAGAtccaaa
agaaaaatcaaggCACACTTAACAGTGACACCTACCATTATAGCCGAGCT
CGTGACACTACCCCTCGTCGAATAAATGTTTTAAAAGGCAACCATGACAA
CCACTCAAATGATAGCACCTTAAGTGGTGGTTATAGTACGGTGAAGGATG
TCGATTTAAACCAACCAAAAAATCAGCCGAATGAAGCAGTGATTGGCCAT
CAAATTCCTGGGAATGAATATGCAGTCGCACCAATAGAACATGAAAACTC
TACACAAGACAATAAGATGAATCATAAAGCATTGGACAGTGGTTACAGTT
CAATACGTTTTGACCAGGAGAAAGGTAAAACAGCGTTGGGAAAGGACTCG
aaaaaaaGAACGTTGAATTATTATAGTACACCGATCAGTGATCGACCAGA
GACTCCACCAGAGATTGCAAAATTGTACACCAAAGTCAATAAAAAGAGGT
GAGATCCTGCGTACAACAGCTTCAAACGGAACCGTAAAGAACAGAATCTT
AATGGAGAAACATCAACATTATATACagaacctaaaaattttctaccAGA
ATACAAAGAGCTAGAGCCAGGAGAGAtccaaaagaaaaatcaaggCACAC
TTAACAGTGACACCTACCATTATAGCCGAGCTCGTGACACTACCCCTCGT
CGAATAAATGTTTTAAAAGGCAACCATGACAACCACTCAAATGATAGCAC
CTTAAGTGGTGGTTATAGTACGGTGAAGGATGTCGATTTAAACCAACCAA
AAAATCAGCCGAATGAAGCAGTGATTGGCCATCAAATTCCTGGGAATGAA
TATGCAGTCGCACCAATAGAACATGAAAACTCTACACAAGACAATAAGAT
GAATCATAAAGCATTGGACAGTGGTTACAGTTCAATACGTTTTGACCAGG
AGAAAGGTAAAACAGCGTTGGGAAAGGACTCGaaaaaaaGAACGTTGAAT
TATTATAGTACACCGATCAGTGATCGACCAGAGACTCCACCAGAGATTGC
AAAATTGTACACCAAAGTCAATAAAAAGAGGTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000069_pilon | genome | sc0000069_pilon:127860..131611 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 889-1470:3171 |
| Aaloc | 862-888:2748 |
| Aaloc | 634-858:2231 |
| Aaloc | 505-630:1645 |
| Aaloc | 340-504:913 |
| Aaloc | 4-336:1 |
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