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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000035_pilon:154620..160490+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_041834 ID=XLOC_041834|Name=XLOC_041834|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5871bp|location=Sequence derived from alignment at sc0000035_pilon:154620..160490+ (Clytia hemisphaerica_ch_hm2_pilon)
aatttgaagacaataacaatatataatagacaataacaataacacaTGGC
TGGAATATATCATCCATCTCGCGGTGGAACTCGTGGCGGTAAAGATCAAT
TCAACTGGGATGACGTCAAAGGAGATAAAGAACGTGAAAACTATCTAGGT
ATGAAAATTAATAATACCCTTTTTGTTATTTAAATTCAGCTGGCACCAAA
ATGAAATACTCGATGTTGTAACAACGTCGTCAAATTTCCATAcatgattt
tatttctttattgaaTCAAAagcacgtgtacactacgaacatacattgca
aaacattacttaaacataaataTAGTCCCCTCCGTTAAGAACTAACATTA
TAttgccagaggtactagacaaTGACCAATCggaagaagaagagaaaaat
gatAATGGAGCAATACATGATTTTTGTCTTGCCAGTAAGAGCTGGTATGA
GGGGTTTTGGTCAAGCCAGGTTGCAACACTGGATACTGAATAAAAGAAGC
TTATTGAGATTTAGGGTTAACGATGGGGTACCAAATTGTTCTAGGAATTG
GAACAgaaaatatcttataaaaaaagctaaagaacgaaatttgagaattt
tctttgttttaaggTCATTCTGTAATGGTACCTACAGGAAAATGGCAAGA
AGGAAAAGACTTGATATGGTATGTAATTTAAAGTACTCACTCTAGTTTTA
CATGTGTTAACTTTATTTCCTATAGAAATATTTTGCAGGTCTTGTAGCTC
TTATTCGTTCGAGTAAGAAAAGTTATTTGAATTCTTGAACCGCCTTAAAA
TCATCTGGGAAGCTCTGAAATGGTTTAGATTGATAACCGTAAAACCTTAA
AGAATCATAAACGGCTTGTAATGAAACAATACTCTTTCCGAATTTGTGGG
TCTAGAGTTGATATGAATTATTATAGTTATGTTTTTTGCATAATAATATT
GTAAGAAAATGAACTCtcagtttctttttttaattgtttctagGTACACA
CGAGATAACAATAAATCGCAGACTGAAaaagaattaaagaaaaaacagGT
TTGTATTAAGTGTCTTAATTTGTACATATGATTTTTCAACTTCTTCTTTA
ATTTAGTAAAGAAGGGTGATTTTATGATAAATGTCtttttttCTGTCAAT
TtgattttgttcttttcttcaGGAATTGAAAGCTGTGAAAGACTTAGAAG
CTCGTGCTATGGCGGCCGCTTTGTAAGTTGTTTTATTAATGTTCTTCCTG
AGTAATTTCATACATATTTTAATTCATAGTTTATATTTCTTATGATACTA
ATTTTCCTTAACTAACGGGCCCCCGGGACTTTGATTTCTCCCTGAtttta
tacacattttttaccGATTATTACATTAGTAATTTCAATTGAATccattg
tttttctcttttagaGGTCACAAGTCATTTTCAACAGGTACAACATCATT
AACAGCTAAGGTACGTTCAAATAGTTTTCTTATCTTTAAGATAGTTGATG
CCGTTCTTTGGAAtatgaattcttttttcttttctgttctCTCCTGTTAC
TTAAGGAGATACAAATTCCACTTGTTAGCCCAACTgttaatttttaaaga
ttttgtgtaTGATTATCTTCTCGGCACAGGTCTTAGTGGTTGCTAAATTA
ATTCTGCCTCAACTCAACTTTTCGGCCCTAACGTTCACTTGTTTTATTCA
TGGTAGGAACTGCAAGAAGTTTTATCACGTGGCAAAACAGAGCACGGTGG
TGGTGAACGGATACAAGGTGTTGGACATAAGAAGTAAGAGtcaaatatta
aatatatacTACACAATTTTTGCACGGAGGCAGTCCCGGCACGCCAAATA
TTAGATATGTTAAATAAAATAAGTTTTGTCAAAAATCTAGAAGGAACACA
AAAGTTCAGAATCACTAGAACTATATGAGAGCGAAGAAGAAAGACTATCT
TTGCTCCATGGAGTTCTGCTGCCGCGGAGGCACAGGAGAACCGAACTCAA
GAGGGCAaagttaatctttcttcttACCCAAGTTGTCGTGATAGCAAGGG
ACTCGTTTcgtttttcagataaaagttCTGATAGtcttttgtaaaaatgt
ttcgTTTCTCTTCCCATTCCGCCCATTGCGGTGAAAACAATTGGGGTAAA
GGAGCCGTGCTCAACTTTCATGATTCTTGAATTGTAAACGTTCTTTTTCT
CCCTTTCGTTTGCATCGCATGCTTTGGAGACAGTGGAATTCCTGAACTTT
TTGGCGATTGGGTTGAAAACCCTTACGTCGAAGAATGCCTTCTGGCCAGG
AATCCAAAATCCCCTAGCAGCAATGTCGAGACGAGCATGGTCTTGGATGT
TGGTCGATTTAGTTTCAAAAGTCTCCCCTGACAAGGTGGTCAATGTCGGT
TCGACCTTCACGTCCTTGCATACTTGTGTCAGGAGGGATGCTGTGGTGTC
ACGGATGGAATTATGACGCTGAATGATGAAACCGCCTTTCTTGCACGAGA
GTGCGTGTCCCAGATCAAAAGGTGAACCACATGGACAGATGGTAGGTAAG
CGACTCAGCTGGTGACCATAGCGGATTTTTATCAGATCCCAGAAGGATGT
TTTGTCGAACTGAAATCCTTCTTCTTTGATTGAAAGCGTTGATAAACAAA
GGGATGCTCCTGGTTCGCTGTTGATTTCAACCAACTTCTTCATCTCATTT
GGCGACTGTTGTTTGATGAGCTCAAGCTATTGGCGGTAACTCTGCATTCG
ATTACGCTTGAATGATGATTTCAGTTTCATGATCTCGTCTTTGTCGATGT
CGTTGACATAGTCTTGGCTTTCGATCTTATTTTGGAGTTGTTTGGTCAGC
GCTTCCGAATTGGAAAACTCTTGATCTGAAATATCACTGAACTTTGGTAT
ACCTAAACCGCCAAGGCTTGGTGGCAAGGTGAACAGCTCACGTTCGGTTT
CGTTTGGCTGGATTCCACCGGTTATGGCTGGGATGAACCGCGCTGTGATG
ATTTCGTCTAGCCTTTGAAGGTGTTGTTTAATGTTGGGGATTGTCCTTAG
GGTAAAGTTGAGCTTGTGCTTGTACCCTGATGTGAAGCAGGTGTAGGCTT
CGTGTGGGGCAATCTTGGCGATTTCTGTGAGCGTTTCGATTTCGCTGCTG
ATCCACGTGTTGACTTTATCGGTGATGAATTCTTCACGGAAGTTTTCTGA
ACCGATGGCAGCTCCGAGGTGTTTCTTTCCTTCGGTAGTCAAATGAAAGG
ATGTCACTCTCAGGGCAGGATAAATAAAATTCCCTCGAGACAAATTTCTA
GATTCTCCCCTTATttcccaaaaaggtaccctacgagggactgatttttc
tattttggagtTTTTGCGGACTCATGGAGGTGAAAGCCACACATCCCCAT
ACCCATATCATTACAGATATGACTGTTTTTAGAGCTTTAATTTCAGGTTC
ACTTTAAGTTCCAAGTTCAGATGAATTGAAGTTAATTAATTTAGTTTACT
TTATGacctttataaaaatcaaactttgctTTCAAAAGCATAACTGAATG
AATTCGAGGGGTGGAGTTGATTGACAGCCAGAACGGTTGATTGACAGGTA
CAGATAGAAGAACTCTGTAGTGGAATTAACACTTTAACACTgtttccatt
gtatttttaaaggaaaatgaacCCATCGCGCCTTgcaattttgaaggaaa
attaaCACATAATGCCTTGTattttaggaaaatgaacatTACCTCTTCta
tattttgaaggaaaatgaatgtGACGTGTCTTGTATCTTgaaggaaaaga
aaatgatgaaaatgattgttACATGTATACCTTGTGATTGTTACATTATA
CCttgtatttttttcatggaaaatTAATGTTGAATGTCCTGTATTTTAGA
AGGAAAATATAACCTGCACATcttcaatatttgaaagaaaatggttGTTA
CTTGTATATTCTGTATTTCTAAAGGAACATGAATGTGAcgtgtcttgtat
ttttgaaggaaaacgaAAATTACACTTcttatatttcaaaaagaaaatga
agactgcttttttgttttttgaaggaaatgAATGTCGcttgtcttgtatt
tttgaagaaaaatgattGCTGGATGttctgtatttttaaaggaaaatgaa
atttgcatatcttcaatatttgaaagaaaattagtgTTATGtgatttgta
tttttaaaggaaaacgaATATTACATTTCTGATAtttcagaaagaaaatc
aagaaatgcttattttgttttattgaatGGAAATGAAACATGGCcttgtc
ttgtcttgtcttgcatttttgaaggaaaatgaaatctGCATCTGCATCTC
TTAtttgtttgaaagaaaatgaatgTTAAATATCTTAGATTATTACACGA
CTTGGGTacgaagaaaaatcaaaacatcttgaATACATGTTTCAATTTCA
TGCATTCAATCTGATTCAATGGATCtcatttagaaaaatatatccgaata
gaaaaatagaagcttccaaattttactggttacttattttccaaaatcga
aatatttagGTTTCTAATTTAGAATTTTGTAATCCTCAACTTGTGTATGG
AGGAATACCCTTTCATTTGTCAGATTCcaacttttttgtttcgatttatt
TTCAGATCTTCCTcatcaaagtcaaaaaattctgGGATGTCATTTCAGGT
ACAGTTTTAACATTTTGTATTCAAAATTCAACTGAAAgcaaaaaatactt
gcaatgtTTGTTTATCCTTGCAAAAGTTTGCATTCTTTATGGCCTTGTTG
TATTTTTTACCCTTGCCCTTTCTGGTTCCCCGAATTACTAGTGGTTCCCT
ATTGAGCGTCCCCGGgtatttgattttattaagaTTTCAACCCGGGACTT
TATTTTCCGATTCCCCGCTTATAAAAATTCGAGATTTTTCCATCCCCGCT
TATACCAATAGTTACCGGAGATTAGCTTTCAATGAGTAATGACGTATAGA
ACTGTTCCCTTCATGAAATGTTTTACTAGTTTACCTAATTTTTGTATCAG
GGTTTTGATTCGTCGAAAGGTGGTCGACCAGATGGAGAGGATCAGGATGA
AAGGTAAAATAActttattttcctttaaaacttttaaaaattgtagTGTG
CTAcgtaaaaatcagaaaattataCCAAAAGGTACTTCTGAGTGCTGGAA
AAACCTTTTAGAATTAGGCAGATTTTCTACCAATAATAGACAAACAAAAA
AGTCCGTTATGCGttctcatttattttttttcattttcaacgaCAAACAT
CCGGTACCGGTTTCATACGGAGATATTCGTGACATTAGTCAgtgtttctt
ttttcttgttCAGCGGCTcttcaaagaagaagaaacgtaagaaagaaaag
aagtcgaagaagaaaaagaagaaacatcaCAAACAAACATCCGATACCGA
CCAAAGCTCCGACCATGATGATCGCAAGCAGAATTCCCGACGTCGCTCCT
CTGATCGTGGCGAACATTCCCGACATAAATATGACAATTCTCGTCATAGA
AATGATAATTCTAGCTATAGAGACGAAAGTCCTCGACGCAGAGACGATAA
TCGAAGTTATAGAGACAAAAGCCCTGCTCAACGTATGAGCGAAAATTCTC
GGTATAGAGACGATAATGCTCGAAGGTCACGTAACCAAAACGAAGATAAA
CCTTTTCATCGTCGACATGATAGACGTTCAGAGACAAACGATAAACGATC
TCGTCGTAAATCGAGAAGTCGTTCTCGTTCTCGCTCAAACGAGAGGACCC
GTTTTCGTAAAAACGAGGAAAAACGAGGACGCCGTAGACACGATAGTTCT
TCCTCAAATGACGGTCGCTAG Coding sequence (CDS) from alignment at sc0000035_pilon:154620..160490+ >XLOC_041834 ID=XLOC_041834|Name=XLOC_041834|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2070bp|location=Sequence derived from alignment at sc0000035_pilon:154620..160490+ (Clytia hemisphaerica_ch_hm2_pilon)
aatttgaagacaataacaatatataatagacaataacaataacacaTGGC
TGGAATATATCATCCATCTCGCGGTGGAACTCGTGGCGGTAAAGATCAAT
TCAACTGGGATGACGTCAAAGGAGATAAAGAACGTGAAAACTATCTAGaa
tttgaagacaataacaatatataatagacaataacaataacacaTGGCTG
GAATATATCATCCATCTCGCGGTGGAACTCGTGGCGGTAAAGATCAATTC
AACTGGGATGACGTCAAAGGAGATAAAGAACGTGAAAACTATCTAGgTCA
TTCTGTAATGGTACCTACAGGAAAATGGCAAGAAGGAAAAGACTTGATAT
GgTCATTCTGTAATGGTACCTACAGGAAAATGGCAAGAAGGAAAAGACTT
GATATGGTACACACGAGATAACAATAAATCGCAGACTGAAaaagaattaa
agaaaaaacagGTACACACGAGATAACAATAAATCGCAGACTGAAaaaga
attaaagaaaaaacagGAATTGAAAGCTGTGAAAGACTTAGAAGCTCGTG
CTATGGCGGCCGCTTTGAATTGAAAGCTGTGAAAGACTTAGAAGCTCGTG
CTATGGCGGCCGCTTTaGGTCACAAGTCATTTTCAACAGGTACAACATCA
TTAACAGCTAAGaGGTCACAAGTCATTTTCAACAGGTACAACATCATTAA
CAGCTAAGGAACTGCAAGAAGTTTTATCACGTGGCAAAACAGAGCACGGT
GGTGGTGAACGGATACAAGGTGTTGGACATAAGAAGAACTGCAAGAAGTT
TTATCACGTGGCAAAACAGAGCACGGTGGTGGTGAACGGATACAAGGTGT
TGGACATAAGAAATCTTCCTcatcaaagtcaaaaaattctgGGATGTCAT
TTCAGATCTTCCTcatcaaagtcaaaaaattctgGGATGTCATTTCAGGG
TTTTGATTCGTCGAAAGGTGGTCGACCAGATGGAGAGGATCAGGATGAAA
GGGTTTTGATTCGTCGAAAGGTGGTCGACCAGATGGAGAGGATCAGGATG
AAAGCGGCTcttcaaagaagaagaaacgtaagaaagaaaagaagtcgaag
aagaaaaagaagaaacatcaCAAACAAACATCCGATACCGACCAAAGCTC
CGACCATGATGATCGCAAGCAGAATTCCCGACGTCGCTCCTCTGATCGTG
GCGAACATTCCCGACATAAATATGACAATTCTCGTCATAGAAATGATAAT
TCTAGCTATAGAGACGAAAGTCCTCGACGCAGAGACGATAATCGAAGTTA
TAGAGACAAAAGCCCTGCTCAACGTATGAGCGAAAATTCTCGGTATAGAG
ACGATAATGCTCGAAGGTCACGTAACCAAAACGAAGATAAACCTTTTCAT
CGTCGACATGATAGACGTTCAGAGACAAACGATAAACGATCTCGTCGTAA
ATCGAGAAGTCGTTCTCGTTCTCGCTCAAACGAGAGGACCCGTTTTCGTA
AAAACGAGGAAAAACGAGGACGCCGTAGACACGATAGTTCTTCCTCAAAT
GACGGTCGCTAGCGGCTcttcaaagaagaagaaacgtaagaaagaaaaga
agtcgaagaagaaaaagaagaaacatcaCAAACAAACATCCGATACCGAC
CAAAGCTCCGACCATGATGATCGCAAGCAGAATTCCCGACGTCGCTCCTC
TGATCGTGGCGAACATTCCCGACATAAATATGACAATTCTCGTCATAGAA
ATGATAATTCTAGCTATAGAGACGAAAGTCCTCGACGCAGAGACGATAAT
CGAAGTTATAGAGACAAAAGCCCTGCTCAACGTATGAGCGAAAATTCTCG
GTATAGAGACGATAATGCTCGAAGGTCACGTAACCAAAACGAAGATAAAC
CTTTTCATCGTCGACATGATAGACGTTCAGAGACAAACGATAAACGATCT
CGTCGTAAATCGAGAAGTCGTTCTCGTTCTCGCTCAAACGAGAGGACCCG
TTTTCGTAAAAACGAGGAAAAACGAGGACGCCGTAGACACGATAGTTCTT
CCTCAAATGACGGTCGCTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000035_pilon | genome | sc0000035_pilon:154620..160490 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 541-1047:5365 |
| Aaloc | 487-537:5051 |
| Aaloc | 445-486:4657 |
| Aaloc | 367-441:1707 |
| Aaloc | 322-366:1416 |
| Aaloc | 271-318:1173 |
| Aaloc | 217-270:995 |
| Aaloc | 163-213:616 |
| Aaloc | 13-159:1 |
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