XLOC_041683 (mRNA) -

Overview


Name	XLOC_041683
Unique Name	XLOC_041683
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000011_pilon:2862513..2866256-
coding sequence from alignment at sc0000011_pilon:2862513..2866256-

mRNA from alignment at sc0000011_pilon:2862513..2866256-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_041683 ID=XLOC_041683|Name=XLOC_041683|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3744bp|location=Sequence derived from alignment at sc0000011_pilon:2862513..2866256- (Clytia hemisphaerica_ch_hm2_pilon)
ATGCCAGAAAAACTGGAAATTGATGCAAAAAATGTGTTCACCCTTACTCG
TCATTATCGGTACAAAGGAAGTTTCACGCACATGATAGCCGAACTTCAAC
CAGTGTTGGATGACAAACCCATTGATTTTTATTATCTTTTGTGCCGCTGG
GGTGCTAGTATCAATGAAGAAGAAAAAGAGAGAACGTTTATCAGCAAACA
TGGCAATGCCAAAAAGCCCTTTGCAGGTATTTCTATTTTAAAAACCTAAG
GGTAGCCTAGAGACTTCAAAGATAATCCGATTTGGCTTGACTTAAGCACA
CTTGATCCTTGGGTGAATCCCTGGGATTGTTTTTTTCAGGGGCACGGTCA
TAAGTATTTGCTCTTTTGTTCTTGCATAAGATTTTCTTGATTAAACTTCA
CTTATCAATTTTGCAATTAGACCTACAAATTATGCAAATAATAAGTTGAG
CCCAGGGCGGTTAGCACGTCCAACAGTTCTGAATATTTCTCTGTTGAAAT
TCTCTTATTCACCAGATTTATTTCTTTGTTCAATTCTTTTTTTAATTTAC
AGGTGACTACCAAAGAAGACACCCAGATGTGAAAACAAATGTTGACTCCC
TACTTGCAGAAAAGGTTGCGGTGGATGAAATTTATCTCCGTGTAAATAAA
CTGAACACAACTGAAGACCCTGCAAAAATTATTGATTCAAAATATGTGCA
CAACCGAAAATATGCCTTGAAGTTGAAAGAAAACATAAATCCATTGAATC
AAGCGGAGGCTATTATAAATTCGATGCAAAAGAATAATTTCATACGCCGA
ACAACCTTCGAGGAAGATCGCTATTCAACCTTTAATTATCACGATATCAT
GATGGGGGACATTGTGAAATACTGCGTCAACGGGGAATCAATTTTTAACG
TTGACACAACGTTTGAATTGGCCGATGGGTTGTGGTTAACAGATTCGTGC
TACGAAAATCTTTCGTTGATAGACGAGCATGGTAAACACCCTTTCTTTCC
AGGCCCTAGCCGTTGGCACTTTAGAAAGGACACATCAGAATTCAGGAAAT
TTGCCACTGATATGATATCATTTGCACCAGAAACAATTGAACTGAGAAAA
CTAGGATTCGATCTTGATCAAGCCCAGTCCAAAGGATTGAAAGAGGTATT
TTTTATTCCATTTATTCCTGTACAAACTGAAGAAAATTAGGGGGGACTTA
CTATTGGTAATATTTACCTCCTGCAACATCTACAAGATATTCAACTCATC
ATTTTCCCCAAAGATTTGCAAACCTGCAGGGTTTGAATCTCAAGATTTTA
AACGTTTCTGTTACTACCTGAATGCTTACTTTCTATTCGCTACAAAGAAC
TCTTCTTTCGAGATCTGAATGTGGGTCAAAAAACTTTGTCTGCTTGCTGT
AACAACTAAGATACAAAAGTAGCATGGCTAATTCATGGTCATTTGCACCC
TTTAACTTCTTAAATTTTTATCAAATCAAAAACGGCTTTAAACAACATAA
ACATGGTAGCTTCCTGATAGTTTGTACTTTTTTCCTTGCCTGGAAAAGAT
TGAACTCCTATGACAGCTGCAATCAAAGTAGCTCAAGAGGAATTTTGTTT
GAATCTTCTTTAAATGGTACAACTACAATTGGCATATTTGGGACTAAAGA
TTTGTAAATATGGGATTTTTGTAGGGTTTGTAGGAATTAGATCTTATTTA
TTAGCACATTTTACCCCCAAGTACTAAGTCATAAGCTATGGGAAAAAGAA
AATCAAGCAGGTCTTTGTCTATAATAGTATAAAAAGAAGCATATCCCAAA
AATAAACAATTCCTTGGATTTTTAAATAAAATTTTCATTTCAACCATATA
CTAAAAACATTTCAAATGCTACAATGCTTCGACTCAATTTTCTTGTTGTT
TTTTATTTAAAAATCCAAGGAAATGTTTAATGTTTGGCTTCTTTTTATAC
TTTTTGAAATTGTCTGGCACTGTTGGATCTTTGTCTATAAGAATCACTAC
TTTTAAGCACAGTGGTCATTGTTCTTCTAAAAAGGGTAGATGTTTTTTTG
CTGATACTTTAACAGATTATCTTGGCTAAGGTTTGATTTTTGGGTTACTA
ATAATATTCCTTCTCAATTAATTGGGCCAAAGTTAACATTTTTTATAAGC
ACATCATAAATTTTATTACTTTTCCAATGTAAAAGTGTTTTTCATTGAAT
GTTCAATGTTCTCCAGAATAACCAGGTAGGTCCATAAAAGTATCACTTGT
TGTTTATTATATATACAAATGATTTTTCTTCATTTTCTTCTTTTGTTCTT
ATCATTTAGGTATTCAAGAACTCGTTTAGTTGCTGGTGTACCCATCACAT
CCAAGGAGCCTGTTCCGATAAATTATCAAAAATGAGAGTAAACTGCATTG
ATAGAATTATGGCTGACATCTTCGGCAGTCAAGTAGGTCCAGTTCAAGAG
CTGGGATTAGCAGACGCTGAAAATGTTGAAGATCTAACAGCCAAACTCAA
CTCACTTGAAGAAGATTGGCAACGAAATGCTCCAGGATTTTTTGACTATT
TTAAACAAAACCACTTCGCCCGATTTTCCGACTGCCTGGTTCAATCTGCC
AGAGATAAATTGCAGATCGATGGAAGGTATGTATGTATGGATTTATTGAG
TCTATCGTTCGATCATTAAAAAGAAATCTAACTAATCTCTGTCCTGTCGG
ACGTAGTGGTCTCGCGAACAGGTTTCTTGGTGTTTTACGAAACGTGGAAA
CTTTCTTTGTCTTCGTCTCACACATCATTGCTTCCAAAGTTGAATTCCCT
TGCATTCTCACACTTCTGTTTGATATTTTTACGTTCGCTGATGGGGAAAT
ACATTTCCATGTTTCTTTAGCTTGTGTACAATAATTCGTCCTTTCTGCTT
AACATTTCCCAATTTAACCTTAAGGTACTACAACAACAATCTTGAATTAT
TGCACAAGTTGCAGAAAAAGAAGAGAGAAGATTTGAAAATAGCTTCAAAA
GATGTCGTTGTCATGTCAGATGTTCTAAACCGATGGATCGAAGAGAATTT
TTATTCTCAAATTAGTTTGGCTATTCGCGGGAAAGGGAAATACCGCCTGG
CACCCGAATATGCAACATTTTATGTCTCCCCTTCAAGATACAGAGACATG
ACTGATGAGCAGCGAAGCAGACATATAACGAAATTCTTACAATTCATTCC
AACGCCTTCGAATACGTACAAGAAACCACAAGATTCTGGTAAGAAGAAGA
AAGTCGTCAAGCGCAGAGCGACACAAGAGGAACCAGCTCTATTTGTTGTT
CGACACGATCAAAGCACGCCTGCTATCGCTCCGGTAAAGATCAGAAAAAG
TGCTGAAAACTGGGCAATTCATGACGTCACTGACGATGATGATGCTGATG
ATGATTTCGATCCCGATCGAGATAACAGTCAACCATTTCATATTGTTGTC
CGTAGTGATGTACGCAATTGCCCAAAGCTCGTCAAAAGATGCGAGCAATG
CAGAATTCCATTTACAACTGAAAAGATTGTGGTCAGGTCTATGGGAAATC
GCCCTCACACCGATTCTAAAGGGAATGAGAAAATTAGATGGGGGAATGTT
TACTTGCATTATTTAACAGATTGTTTGAGTAAATTCAATCCAGACTTTAG
ATTCTCGAACGTAAAAATCAGCAAAGATACTGCAAAGCTGCTGACAACTA
AGAGATTGAAAAAACTTACTAATAAAGGTTGCAAGTTAGAATAG

Coding sequence (CDS) from alignment at sc0000011_pilon:2862513..2866256-

>XLOC_041683 ID=XLOC_041683|Name=XLOC_041683|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3912bp|location=Sequence derived from alignment at sc0000011_pilon:2862513..2866256- (Clytia hemisphaerica_ch_hm2_pilon)
ATGCCAGAAAAACTGGAAATTGATGCAAAAAATGTGTTCACCCTTACTCG
TCATTATCGGTACAAAGGAAGTTTCACGCACATGATAGCCGAACTTCAAC
CAGTGTTGGATGACAAACCCATTGATTTTTATTATCTTTTGTGCCGCTGG
GGTGCTAGTATCAATGAAGAAGAAAAAGAGAGAACGTTTATCAGCAAACA
TGGCAATGCCAAAAAGCCCTTTGCAGATGCCAGAAAAACTGGAAATTGAT
GCAAAAAATGTGTTCACCCTTACTCGTCATTATCGGTACAAAGGAAGTTT
CACGCACATGATAGCCGAACTTCAACCAGTGTTGGATGACAAACCCATTG
ATTTTTATTATCTTTTGTGCCGCTGGGGTGCTAGTATCAATGAAGAAGAA
AAAGAGAGAACGTTTATCAGCAAACATGGCAATGCCAAAAAGCCCTTTGC
AGGTGACTACCAAAGAAGACACCCAGATGTGAAAACAAATGTTGACTCCC
TACTTGCAGAAAAGGTTGCGGTGGATGAAATTTATCTCCGTGTAAATAAA
CTGAACACAACTGAAGACCCTGCAAAAATTATTGATTCAAAATATGTGCA
CAACCGAAAATATGCCTTGAAGTTGAAAGAAAACATAAATCCATTGAATC
AAGCGGAGGCTATTATAAATTCGATGCAAAAGAATAATTTCATACGCCGA
ACAACCTTCGAGGAAGATCGCTATTCAACCTTTAATTATCACGATATCAT
GATGGGGGACATTGTGAAATACTGCGTCAACGGGGAATCAATTTTTAACG
TTGACACAACGTTTGAATTGGCCGATGGGTTGTGGTTAACAGATTCGTGC
TACGAAAATCTTTCGTTGATAGACGAGCATGGTAAACACCCTTTCTTTCC
AGGCCCTAGCCGTTGGCACTTTAGAAAGGACACATCAGAATTCAGGAAAT
TTGCCACTGATATGATATCATTTGCACCAGAAACAATTGAACTGAGAAAA
CTAGGATTCGATCTTGATCAAGCCCAGTCCAAAGGATTGAAAGAGGTGAC
TACCAAAGAAGACACCCAGATGTGAAAACAAATGTTGACTCCCTACTTGC
AGAAAAGGTTGCGGTGGATGAAATTTATCTCCGTGTAAATAAACTGAACA
CAACTGAAGACCCTGCAAAAATTATTGATTCAAAATATGTGCACAACCGA
AAATATGCCTTGAAGTTGAAAGAAAACATAAATCCATTGAATCAAGCGGA
GGCTATTATAAATTCGATGCAAAAGAATAATTTCATACGCCGAACAACCT
TCGAGGAAGATCGCTATTCAACCTTTAATTATCACGATATCATGATGGGG
GACATTGTGAAATACTGCGTCAACGGGGAATCAATTTTTAACGTTGACAC
AACGTTTGAATTGGCCGATGGGTTGTGGTTAACAGATTCGTGCTACGAAA
ATCTTTCGTTGATAGACGAGCATGGTAAACACCCTTTCTTTCCAGGCCCT
AGCCGTTGGCACTTTAGAAAGGACACATCAGAATTCAGGAAATTTGCCAC
TGATATGATATCATTTGCACCAGAAACAATTGAACTGAGAAAACTAGGAT
TCGATCTTGATCAAGCCCAGTCCAAAGGATTGAAAGAGGTATTCAAGAAC
TCGTTTAGTTGCTGGTGTACCCATCACATCCAAGGAGCCTGTTCCGATAA
ATTATCAAAAATGAGAGTAAACTGCATTGATAGAATTATGGCTGACATCT
TCGGCAGTCAAGTAGGTCCAGTTCAAGAGCTGGGATTAGCAGACGCTGAA
AATGTTGAAGATCTAACAGCCAAACTCAACTCACTTGAAGAAGATTGGCA
ACGAAATGCTCCAGGATTTTTTGACTATTTTAAACAAAACCACTTCGCCC
GATTTTCCGACTGCCTGGTTCAATCTGCCAGAGATAAATTGCAGATCGAT
GGAAGGTATTCAAGAACTCGTTTAGTTGCTGGTGTACCCATCACATCCAA
GGAGCCTGTTCCGATAAATTATCAAAAATGAGAGTAAACTGCATTGATAG
AATTATGGCTGACATCTTCGGCAGTCAAGTAGGTCCAGTTCAAGAGCTGG
GATTAGCAGACGCTGAAAATGTTGAAGATCTAACAGCCAAACTCAACTCA
CTTGAAGAAGATTGGCAACGAAATGCTCCAGGATTTTTTGACTATTTTAA
ACAAAACCACTTCGCCCGATTTTCCGACTGCCTGGTTCAATCTGCCAGAG
ATAAATTGCAGATCGATGGAAGGTACTACAACAACAATCTTGAATTATTG
CACAAGTTGCAGAAAAAGAAGAGAGAAGATTTGAAAATAGCTTCAAAAGA
TGTCGTTGTCATGTCAGATGTTCTAAACCGATGGATCGAAGAGAATTTTT
ATTCTCAAATTAGTTTGGCTATTCGCGGGAAAGGGAAATACCGCCTGGCA
CCCGAATATGCAACATTTTATGTCTCCCCTTCAAGATACAGAGACATGAC
TGATGAGCAGCGAAGCAGACATATAACGAAATTCTTACAATTCATTCCAA
CGCCTTCGAATACGTACAAGAAACCACAAGATTCTGGTAAGAAGAAGAAA
GTCGTCAAGCGCAGAGCGACACAAGAGGAACCAGCTCTATTTGTTGTTCG
ACACGATCAAAGCACGCCTGCTATCGCTCCGGTAAAGATCAGAAAAAGTG
CTGAAAACTGGGCAATTCATGACGTCACTGACGATGATGATGCTGATGAT
GATTTCGATCCCGATCGAGATAACAGTCAACCATTTCATATTGTTGTCCG
TAGTGATGTACGCAATTGCCCAAAGCTCGTCAAAAGATGCGAGCAATGCA
GAATTCCATTTACAACTGAAAAGATTGTGGTCAGGTCTATGGGAAATCGC
CCTCACACCGATTCTAAAGGGAATGAGAAAATTAGATGGGGGAATGTTTA
CTTGCATTATTTAACAGATTGTTTGAGTAAATTCAATCCAGACTTTAGAT
TCTCGAACGTAAAAATCAGCAAAGATACTGCAAAGCTGCTGACAACTAAG
AGATTGAAAAAACTTACTAATAAAGGTTGCAAGTTAGAATAGGTACTACA
ACAACAATCTTGAATTATTGCACAAGTTGCAGAAAAAGAAGAGAGAAGAT
TTGAAAATAGCTTCAAAAGATGTCGTTGTCATGTCAGATGTTCTAAACCG
ATGGATCGAAGAGAATTTTTATTCTCAAATTAGTTTGGCTATTCGCGGGA
AAGGGAAATACCGCCTGGCACCCGAATATGCAACATTTTATGTCTCCCCT
TCAAGATACAGAGACATGACTGATGAGCAGCGAAGCAGACATATAACGAA
ATTCTTACAATTCATTCCAACGCCTTCGAATACGTACAAGAAACCACAAG
ATTCTGGTAAGAAGAAGAAAGTCGTCAAGCGCAGAGCGACACAAGAGGAA
CCAGCTCTATTTGTTGTTCGACACGATCAAAGCACGCCTGCTATCGCTCC
GGTAAAGATCAGAAAAAGTGCTGAAAACTGGGCAATTCATGACGTCACTG
ACGATGATGATGCTGATGATGATTTCGATCCCGATCGAGATAACAGTCAA
CCATTTCATATTGTTGTCCGTAGTGATGTACGCAATTGCCCAAAGCTCGT
CAAAAGATGCGAGCAATGCAGAATTCCATTTACAACTGAAAAGATTGTGG
TCAGGTCTATGGGAAATCGCCCTCACACCGATTCTAAAGGGAATGAGAAA
ATTAGATGGGGGAATGTTTACTTGCATTATTTAACAGATTGTTTGAGTAA
ATTCAATCCAGACTTTAGATTCTCGAACGTAAAAATCAGCAAAGATACTG
CAAAGCTGCTGACAACTAAGAGATTGAAAAAACTTACTAATAAAGGTTGC
AAGTTAGAATAG

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_041683	XLOC_041683-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000011_pilon	genome	sc0000011_pilon:2862513..2866256 -

Properties


Property Name	Value
Aaloc	1138-1956:820
Aaloc	820-1134:1436
Aaloc	229-819:3191
Aaloc	1-225:3745

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XLOC_041683 (mRNA) -