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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000006_pilon:2008736..2017801- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_041640 ID=XLOC_041640|Name=XLOC_041640|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=9066bp|location=Sequence derived from alignment at sc0000006_pilon:2008736..2017801- (Clytia hemisphaerica_ch_hm2_pilon) CAAGACATATTTCAGTACAATTTTAGCCGTTCAAGATTACTTCTCTTAGT
GATAAGTACGGTAAGGTAAGTACCATCTTTTAACTTACTAAGGCTTGCTT
CAGTAGAAATGAATTCTTCACCGTTTTACGAATCCTGTATTCGTGAATAC
TCCAAAAAGAAAATTTGCAACAGTTGTATACATTTTAGAAGCAGTTTTAG
CATTCGTCACACAGATGAACTTGTAACTCATTTTTCATCGAATAACAAAT
GATTATTTACTACACTCCTCACAGACCCACTGAAAAAAATTGTCAAAATA
TCGTCCCCGGTGGCAAATTATCCTCCAATTTTCGTCCCCACTGAAAATAA
TCAAATAATCCTATCCTCACTGCAAAATATCATGCTATTGTTCCCATCCC
CACTGAATTATCTCTGACTTGAAAACAAAAGAATTGAAATCCCCAGCCAT
TAAAAATATTGGAATATCAATCCCCATCGAGTTTCACCAGTCTGTTATTT
TCATCCCCACTGGCTGAAAAAATCCTACCGGGTCTGTGAGAACGGGGTGT
TCATTTACTACACTTTACTTCCCACTGGAAAACCTTTTCAAAAAAGATTT
TCAGAGTTAGTATTGGTTTTGTATTTATGTATTAATTCTCTGTTTTTCAG
CAATAATTTCTCTTTAGCAATGAAGATCTGTTTTGCTGTGTTATTGATAT
TGGCTGTCTTGGCCATCGTTGAATCAAGGTGGCGGTAAGTGGTTCACTTT
TAAGCCTCAAAATGACCATGTCTTTACTTGTAGCAACTACTTTCTTGAAT
ATCGTTTAAAGTTAGTCTTTTCAAGGTTGAAGTTGCGTGAGAGCGTATAC
GACTAACAAGGGTATTAACAAAAGGTGTGACCAGTGTGATCAAACCAGAT
GGATGGTTTAACAATATGTAAAATCGGCATTTATAAATTCGATTGGGTCA
ATAAACCTTGTCGGAGTTTTTGATTTTTCAAAAAGCGATGCATTGTGGGA
TTGTTTTGGGGGTATTACAATAGAAATCTCTTAGGAATTCCTCGAGGGAA
TTCTACTGTAATACTCCCGAAACAATCCCACAATGCATCGCTGTTTTAGA
AAAATAAAAAACTCCGATAAGGTCTATTGGCTTGATAGGACAGTTAAGAT
TCGAGATTTTCACTTATTTTCATCTCTACTAGGAGACATAGACGTCATCA
CCATTCAAAACATCACCATTCAAAACATGGCTCATCCAAACAGGTTTCTA
CAGGCAGTCAAGGAGGAAACCATGATATGAATAATTGGGATTTCTTCATG
TTAGTGCAACAATGGCCTCTTTCATCATGCGAGAAAGAAAATGTAAGTTA
TTTTAGAACAAACCATTATAAAAATAAAAAGCTTTAATGACCAGAATTTT
AAGAATATTTTGCTTTGCGGACTTTAAAACACCGAGATTTGTTGGGAAAA
TGGACAAAATAAAACATTGTTAAGAACACCTTTAGCCTTAAAACTCAAAA
AGTTAAAAACATCCGAAGGCTTCAAAAATTAATGTGTTCTTATAAAAAAA
CGTGTATTTGCGTATTAAATCTATGTAGAGAGTACAGTATTAGCCATCAA
AAGTTATGCGTTAAAGAATCTTTCCTTTCCCGGCTAATAAAGAACCTTCC
TCTAAGATATCACAGGTTCTTGAGTTAGCTTTCTCACGAAACGTAATAGT
TATCGGACATTTGCGAGTACAATATGAGAAATATTTTACGAGTTCCGAGA
TTTTTCCGTACAATATTTTCCGAGCCTGTAGGCGAGGAAAATATACGGAA
AATCCGGAACGAGTAAAATATTTCCATATTGTACGAGCAAATGTCTGATA
ACTGGTCTATCGGTGACCCAAAAAATGCACTTTTTGTGTTGGAAAAAAGC
GCAGGGCACTTTCGTAGCAAAGTGACGTTAGATTGCTGCTACCGCTACAA
TGCAACAATATCTTTTCGTCAATTTATATTTTGTACATGTAAAATATAAG
ATATATTGTACTCTTTTTAACCAATCAGATTGCAGATATTTTTTGGATCG
CCGATAAAGAATTTTAAGATTTAAAGAATTCAATAATAACATAGTCAAAC
TATTCAACATAAAATTGCACGATTCTACTCAAGTTCCACTCAAGATAGGT
GCCTGAAATATAACTCACTTCTTTCTAATCTAAATCGCAGATAATTACAA
AACTGCAGTATAAGGAGCATGAATCCGTTTTAGTAGATGCCTACAGCCTA
GCTGCTTTCTATACTTTTTCCCTACTTATACTACCTAAAATGATTCCTCT
CCACTTCTCCGTTTACCACATTCTAAATTACATTATTAGGTAACACATGA
GCACACATGTGTCATCCCAAAGTATGTTGATGGCTGGACACTTCATGGTC
TATGGCCTTCAACCAATGTCGAAAAGAATTACCCAACAGAGTGTACTAAT
GAAAAGTTTGATCCCGAGGAAGTCAGGGTATAATTCATTTCATATTTTGA
CTATATTGTTTTACTCTTTATGATTAGCAAAGTCGATTGAAACCCCCTCA
TAATACTGCTATTGTATATGTCACATATGTTATGCGACCGAGAAAGACTT
GGTAGCTTTAGGAGTACAGACTAATTTTGTTTTGTTTAGGGCTGTTTGTA
GTTCTTTTAATGGTCCAACGCAAGAAGGAGCCTGAATTATAACACGCTTC
TTTCTATTGCACGAATCCTTTAGTAGATGCCAGCGGCCTTTCTTCTTTCT
ATTCTTTTGACCTACTATTCTTCACCTGAAATGATCCCTCCCCCTTACCG
TTTTAACACCCCTTCAAGAAGCTGTTTATGCTAAATGTGTGTCTTTTTTC
AGGATCTGAAGCCTCGCATGTTGAAGTACTGGCCCAACATGTTTGTAGAT
TCGGACAAGAATCATTTTTGGTAAGAATGTTGTCTGTTTTATTCGAGTGT
CTCCTTAATTCGATCAAGCTATTTTGTCTCTCTAACACGAATGTCTCCTT
AAAACTCGAACCAGTTATTTTGTCCCTTCAGTTAACAATGTCTTTTAAAC
CTTACACCGTAACTCGAGATTTCTTTAACTTTAACAAATTTGTGTTGCAT
GTGCGTGTTCGAGTTACGGTGACTCTACAACCTTTTCAAGACTAAATTAA
TACCCCTATGACACCATATTTGCAAGCTGACAATATATGCTGCAAAAATT
CGCTTTTAAGGTCACGCAATTACAATGTAGCATTAGTGGCATAATAAAGT
CTAATTAAAGGAAATACCTCACTGGAAAGATGAATTTAAGGGGATAATTT
TGATAATATTAGCGGGCCGGCTAACATTTTTTCTACGGTGCAAACAATTG
TATATGACCATGAGAAATGTAAATATCTTTTTGGACCTATCATTTTTCAA
TGATACTAATTTTGGTAGCCGGAACTTTCTAAAAATTGTCAGAACAGCCG
AGAATCGCCGGAAAACGGATTTTCTTGAATTTCTCGAGCTGTACTTGTTT
ATTTGTCATGAAATTTTGCACACTGGTGCAAAATGGCAACCTAAAATGTA
AGGGAGCCCGGTTTTCGAAAAACAATATCTTCCCTGCCGAAAATGCTAGA
AATATGCCAAAAATAACAGTTTTCATTATTGGTTTTTTGGACCTACCTGG
AGGTCCTATAAATTAACCTCTGTTCGTCCGTCCGTCCGTCTGTCCGTCCG
TCCGTCTGTTACCAGCTTTTCTCGAGATTGGCTCATTAGTTTTTTCTGGT
TTTTGGCACAAAGATGCAAAATGGCAATGCCCAAAATGTGACGGAGCCTG
ATTTTCGAGAAAAAAAAATTTTCCGGCCGAAAATGCCGGAGATATGCCGG
AAAAACCGGTTTTTTGACATTTTCTCGAGATTTCATCATTAGTTTTTTCT
GATTTTTTGCTTAAATATGCGTATTAACAATGCCCAAAACATGACTGGGT
CCGATTTTTGAGAAAAAAATTTTTCCAGCCGAAAATGCCGGAAATATGCC
GGAAATCACCGTTTTTCTGAATTTTCATTAGACTTTTTCCTTATAATTGG
TTGTTTTTTCATTCAAAAACATTTTTAATGGCAATGCCCGCCATCAAGCA
TGTTTCAATTTTCAATAAAATTGATTTTTGAAGCCGGAACTATTAAAAAA
TCGCCGGAACAACCTATATTCGCCGGAAAGACAGTATTTCTTGAATCTCT
CGAGCTATAATTTATATTTTTTTATGAAATTTTGCACACTGATGCAAAAT
GACAATACCTAAAATGTGACAGAGCCCGATTTTCGAAAAACATTTTTTTC
CGGCTGAAAATGCCGTGAATATGCCTGAAAAACCGGTTTTTTGACATTTT
CTCGAATTTTCATCCTTAGTTTTTTCTGATTTTTTGCAGAAAGATGCGTA
GGCGCAATACTCAAAACATGACAGAGTTCGATTTTTTGAGAAAATTTTTT
TTCCGGCCGAAAATGCCGGAAATCGCCGTTTTTGTTTTCTAGAAACCTTT
ATTAAGCTGTGCGTTTTTCTGATAGTGTATTGTTTTTATAAAGAAAAGCG
TTTAATAACTTATTTACTTTTTGGACCTACCTCCGGGTGCCCCGGTGGAG
GTCCTATAAATTAACCCATGTCCGTCCGTCCGTCCGTCCGTCCGTCCGTC
TGTTACCAGCTTTTCTCAGGATTGGCTCATTAGTTTTTTCTGATTTTTTG
CACAATGATGCAAAATGGCAATGCCCAGAACGTGACGGAGCCCGATTTTT
GAGAAAAAATTTATTTGGGCAAATTTGGGCCAAAAACTACCTAAAAATAG
GATTTTTTGGACTTTGTGCAAAAATCCTGTCATTACTTTTTTGATTTTTT
GTACAAAGATGGAGTGCAAGATTCTCTAAAGAATGGCTGAAGTGGTTTTT
CCCGGAAAATTCTTATTCGCCTTAAAAAGCGGATTTTTGTATTTTGGGGG
AAATTCCCTTTAACCAAATAAGAAAATATAGCTTTTCTCAATGTTGACTC
ATAATTTTTTTCTGATTTTTTGCACAATGATGCAAAATGGCAATGCCTAA
AATGTGTCGGAGCCCGATTTTCGAAAAAAAATATATTTGGGCAAATTTGG
GCCAAAAACTGCCTAAAAATAGGGTTTTTTGGACTTTGTGCAAAATTCTG
TCATTACTTTTTTCTGATTTTTTGTACAAATATGGAGGGCAAGATTCTCT
AAAGAATGGCTGAAGTGGTTTTTCCCGAAAAATTCTTATTCGCCTCAAAA
AACGGATTTTCGTATTTTTGGGGAAATTCCCTTTAACCAAATAAGAAAAT
ATAGCTTTTCTCAAAGTTGACTCATTATTTTTTTCTGATTTTTTGCACAA
CGATGCAAAATGGCAATGCCTAAAATGTGACGGAGCCAGATTTTCGAAAA
AAAATATATTTGGGCAAATTTGGGCCAAAAACTACCTAAAAATAGGGTTT
TTTGGACTTTGTGCAAAATCCTGTCATTACTTTTTTCTGATTTCTTGTAC
AAAGATGGAGGGCAAGATTCTCTAAAGAATGGCTGAAGTGTTTTTTCCTG
GAAAATTCTTATTCGCCTTAAAAGACGGATTTTCGTATTTTGGGGAAATT
CCCTTTAACCAAATAAGAAAATATAGCTTTTCTCAATGTTGACTCATAAT
TTTTTTCTGATTTTTTGCACTATGATGCAAAATAACAATGCCCAAAATGT
GACGGAGCCAGATTTTTAAGGAAAATTTTTTTGGGCAAATTTGGGCCAAA
AACAGCTTAAAAGGTTTTTTGGGTCTGAATGGTTTAAGTGATTTTCGTAT
TTGGGGACAATCCTTTTTACCATTTTACATTATTCAACACACAAGCTTTA
TTTTTCCATTCTGAATTTTTGTACAATTATTGTCACTTTTTTTCTTATTT
TCATCTGATGTTAATCATTAGGTAGGTCCATTCAGCATGTTGCTTGTTTT
TCATAAGTCTATTTCAATAGTATTGATAATTTCTACCAATAGATATGCTT
TCATTTTATATATTTTTGTATTTTGACCAGTTATGTCTTATGTGTTTCAT
TGTTTCAATGTTCATTGGTTAGTTTTGGTAACCAGGTAGGTCCATAAAAG
TATCCCTTGTTCTGATATATGTTACGATGTTATGTATTCATGTAACCATC
TCATGATGTTTTTCCGATCTGTGTTCGCTCGTTCGTTCTTTTTCCACGAT
TTTTTCCATCATTGCTTTAAACTACAACTAATCGACTTTCCATAACTGGA
ACCTCCTCAACTTGATTATCTCCATAAACGCGAAAAAAATTGAGGAGATT
CTTATGCTATTCTGCCTCTCTACAACTCAAATTTCCGTAACACAAATAAT
TTTACTAACTATCCTCTTGGTGTTCCAGCACTTGACTATGTTACACTTTC
CTACTTGCTCTACTCAGGCCCTTTAAGTGGTTCTGAAACGAAAATTCTCT
TTTCCCTCTTTTCTAAGATCTCTTCGGTACAGTCTTAAAAACACCGAGAG
AGTTGTATGTTCAATGAAAAGGCCTCACGCATCAATCAAAACTTTAATCA
TCAGGTAGGTCCAACCAGCGTTCCGTTTATGCTTATTACCTTTGAACTGG
CATCTTGATAAATGACATGGTACAGGGCAATACAAAACTTAATCTGTTTG
GTCGACAAATTTATCCTTTTTCTTTAATTAGGGCACACGAATATGAAAAG
CATGGCACATGCGCAGAAAGTGTTCCAGGCTTTAAAACAGAGCACGAATT
CTTTAATAGTGCATTGAACTTACGTGATGAACATGATATTGGAAAGTAAG
TAGTTGATTGATTATATATAGCCTGTACAAACCCGCCTGCGGGTGATTTT
TTTTCTAATTTTAATATCTTTTCGCGTTGTTTACTCCCCGTTATCTTTTT
GGTACTAAACTAATGTAATTATATCAGTGGGAATAGAAAATTTTCTCTTG
AGAATACTTCGTTTCTAACAACGATCAATGTTCAATACACGTCGCAAATG
GGAACTCTCCCAGGTTATGCAATTCTATTCTAGATGTATAGTAGGCTACT
CTTGGTACAATACGTACTTAGGGCGATGTTAAGCATAATACCATCCCGCC
CGTGTATCGAGAGAAAAGGATTGGCAGAACCTGGTACTTTTAGGTTACAA
ATAAACGAGGGGGTCGCATAAACGGGGGGAGGGGGTTGGAAAATTTTCGA
GATTTTGTTAAACGGGGGGACCTAATTGCCGATGAGGTTGGAAATTGTAC
TTCTAAAAACCAAAAAACAAGACAAATATTATTAGTTACACGGTCTTCTC
GAGGTGGGATACGGGATATACAGGGTCAGTAAAAACCGCATTGGTGGCGG
GGCTTGTCGAGTTTTTTTCTCAATCGAATGCGAGGAAGACAGATACGGTT
TATATCCCACCTCCGCGTGATGTCTTTCGACCAATGGAATCGCGAGAATC
TCACTGATGCGGGATAAAATCAGGCTATTTAGAGCAAAATAAGGGGCCCT
CTCTTTGACAGCTGAAAATATTCTTGAAAATTAATAAACGGGGAATCCTA
TAAGGTCGGGGGGGTTGGAAAATTTTCAAATTAACAAGCGGGGGGGCGTT
TATTTGGAACCTAAGAGTAAGCACGCTACTCTTTTGGTTCTGTACAATGT
AAGGTTAATCTCTCTTACTTTCTCTTCGATAGCATTCTTGCCAGTCAAGA
AATCACACCACGAGATCAACCATACGAGGTATTCTGAAATGTTCTGTTTA
AACTCTCTGACCCCCCTGTTTTTATTGTTAGTTACTCCTAAGAAGATGGT
TTATTAGCCCAAACACTGACTATATGTTATATCAACAGAGGCTAACATTT
TGCAATCTATTGCTAGAACGCGTCTTCATAAGGGAAAATTTATAAGGTTT
TTAACCCATCAAATATCACACTGTCATCATATATAGGATCGCTCAATTTT
TTCGGTCCTGAACCAGTATTTTTTATAGTTTCGGCAGGTATGCGCATTTA
AATCAATTTTTGTTTTGAAAATTTGAAGTTACAAAAGCTCTAAAAGGGAA
GGAAACGTATACTTCTGACCTACCTATCGAAAACATACTTCTTCTAGCGT
AAATTATGAAAAATATCTTTTGTAATATTTTTTTTCTTTAGGGTTCTGAT
CTGAACGATGCATTGAACAAAGAATTGGGGAAGACAGGATGTGTGCAGTG
TCAAAAGATTAAAGTAAGTTAAAACTATTCTGGTACTCCAGTTCTTTGAG
TTGAGGGGCCAAGATTCCATTAACACTTGTAGTTGGCAGCTAATCAAATT
TTCTGATATTTTACAGTATCTCTTTTATTGAGGCAGATGACGTCCTTCAT
TTTTGACTAAAGAACCTACAACACTAACAGCTCGGTTGACTTTTGAATAT
TCGGTATTGAATTTACAAGAAAACTCGAACCCAGTTCCCTCACGCTTTAA
AGGTTGTTATATGTATCATTAAATTGTCAACAAAACATCCACCAAGCGCG
TTGGAGGGCCGAAATTTTCAAATCATTTTATATCAATCCCTTTTCCCACC
TCCAAACACCCCAAGTGACATAGGCAGGCGGTATAAAAAACCCACTGAGA
ACCCTTCCTACTGGAAAAATTGTCCAAAATATCGTCCCCGTTGGGAAATT
AATTATCCTCCAATTTTCCCACTGATAATAATCAAGTAAACCAATCCTCG
CTGCAAAATATTATGCTTTTTTCACATCCCCACTGAATTTTCTGACTTGA
AAACAAAAGAATTTGAAATCCCCAGCCATAAAAAATATGGGAATATCAAT
TCCAATCGAGTTTCAGTCAATTATTTTTATACCCACTGGCTGAAAAAATT
CTATCGAGTCTGTGAGAAGGGGGTTTTTATAAAGGGTAACAGTGTTTTAA
AAGGTAACATTAAAATTAAAAATCTTTTTTATGACAGGATATTGGTTATG
TCATTTCGGCTGCCGTAGTTTGTCTGAGTAAATCAAAAGAAGTGATCGAT
TGTCCATATTGTGAACATAAATGTTTGGATGAAGACAAAGTTTACTACCA
ACCCATCCGGGGATAA Coding sequence (CDS) from alignment at sc0000006_pilon:2008736..2017801- >XLOC_041640 ID=XLOC_041640|Name=XLOC_041640|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1752bp|location=Sequence derived from alignment at sc0000006_pilon:2008736..2017801- (Clytia hemisphaerica_ch_hm2_pilon) CAAGACATATTTCAGTACAATTTTAGCCGTTCAAGATTACTTCTCTTAGT GATAAGTACGGTAAGCAAGACATATTTCAGTACAATTTTAGCCGTTCAAG ATTACTTCTCTTAGTGATAAGTACGGTAAGCAATAATTTCTCTTTAGCAA TGAAGATCTGTTTTGCTGTGTTATTGATATTGGCTGTCTTGGCCATCGTT GAATCAAGGTGGCGCAATAATTTCTCTTTAGCAATGAAGATCTGTTTTGC TGTGTTATTGATATTGGCTGTCTTGGCCATCGTTGAATCAAGGTGGCGGA GACATAGACGTCATCACCATTCAAAACATCACCATTCAAAACATGGCTCA TCCAAACAGGTTTCTACAGGCAGTCAAGGAGGAAACCATGATATGAATAA TTGGGATTTCTTCATGTTAGTGCAACAATGGCCTCTTTCATCATGCGAGA AAGAAAATGAGACATAGACGTCATCACCATTCAAAACATCACCATTCAAA ACATGGCTCATCCAAACAGGTTTCTACAGGCAGTCAAGGAGGAAACCATG ATATGAATAATTGGGATTTCTTCATGTTAGTGCAACAATGGCCTCTTTCA TCATGCGAGAAAGAAAATGTAACACATGAGCACACATGTGTCATCCCAAA GTATGTTGATGGCTGGACACTTCATGGTCTATGGCCTTCAACCAATGTCG AAAAGAATTACCCAACAGAGTGTACTAATGAAAAGTTTGATCCCGAGGAA GTCAGGGTAACACATGAGCACACATGTGTCATCCCAAAGTATGTTGATGG CTGGACACTTCATGGTCTATGGCCTTCAACCAATGTCGAAAAGAATTACC CAACAGAGTGTACTAATGAAAAGTTTGATCCCGAGGAAGTCAGGGATCTG AAGCCTCGCATGTTGAAGTACTGGCCCAACATGTTTGTAGATTCGGACAA GAATCATTTTTGGATCTGAAGCCTCGCATGTTGAAGTACTGGCCCAACAT GTTTGTAGATTCGGACAAGAATCATTTTTGGGCACACGAATATGAAAAGC ATGGCACATGCGCAGAAAGTGTTCCAGGCTTTAAAACAGAGCACGAATTC TTTAATAGTGCATTGAACTTACGTGATGAACATGATATTGGAAAGGCACA CGAATATGAAAAGCATGGCACATGCGCAGAAAGTGTTCCAGGCTTTAAAA CAGAGCACGAATTCTTTAATAGTGCATTGAACTTACGTGATGAACATGAT ATTGGAAACATTCTTGCCAGTCAAGAAATCACACCACGAGATCAACCATA CGAGCATTCTTGCCAGTCAAGAAATCACACCACGAGATCAACCATACGAG GGTTCTGATCTGAACGATGCATTGAACAAAGAATTGGGGAAGACAGGATG TGTGCAGTGTCAAAAGATTAAAGGTTCTGATCTGAACGATGCATTGAACA AAGAATTGGGGAAGACAGGATGTGTGCAGTGTCAAAAGATTAAAGATATT GGTTATGTCATTTCGGCTGCCGTAGTTTGTCTGAGTAAATCAAAAGAAGT GATCGATTGTCCATATTGTGAACATAAATGTTTGGATGAAGACAAAGTTT ACTACCAACCCATCCGGGGATAAGATATTGGTTATGTCATTTCGGCTGCC GTAGTTTGTCTGAGTAAATCAAAAGAAGTGATCGATTGTCCATATTGTGA ACATAAATGTTTGGATGAAGACAAAGTTTACTACCAACCCATCCGGGGAT AA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0000006_pilon | genome | sc0000006_pilon:2008736..2017801 - |
Properties
| Property Name | Value |
| Aaloc | 748-876:130 |
| Aaloc | 676-747:926 |
| Aaloc | 631-675:1384 |
| Aaloc | 517-627:2385 |
| Aaloc | 448-513:6215 |
| Aaloc | 310-447:6728 |
| Aaloc | 151-309:7884 |
| Aaloc | 67-147:8416 |
| Aaloc | 1-63:9067 |
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