XLOC_041640 (mRNA) -

Overview
NameXLOC_041640
Unique NameXLOC_041640
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000006_pilon:2008736..2017801-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_041640 ID=XLOC_041640|Name=XLOC_041640|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=9066bp|location=Sequence derived from alignment at sc0000006_pilon:2008736..2017801- (Clytia hemisphaerica_ch_hm2_pilon)
CAAGACATATTTCAGTACAATTTTAGCCGTTCAAGATTACTTCTCTTAGT GATAAGTACGGTAAGGTAAGTACCATCTTTTAACTTACTAAGGCTTGCTT CAGTAGAAATGAATTCTTCACCGTTTTACGAATCCTGTATTCGTGAATAC TCCAAAAAGAAAATTTGCAACAGTTGTATACATTTTAGAAGCAGTTTTAG CATTCGTCACACAGATGAACTTGTAACTCATTTTTCATCGAATAACAAAT GATTATTTACTACACTCCTCACAGACCCACTGAAAAAAATTGTCAAAATA TCGTCCCCGGTGGCAAATTATCCTCCAATTTTCGTCCCCACTGAAAATAA TCAAATAATCCTATCCTCACTGCAAAATATCATGCTATTGTTCCCATCCC CACTGAATTATCTCTGACTTGAAAACAAAAGAATTGAAATCCCCAGCCAT TAAAAATATTGGAATATCAATCCCCATCGAGTTTCACCAGTCTGTTATTT TCATCCCCACTGGCTGAAAAAATCCTACCGGGTCTGTGAGAACGGGGTGT TCATTTACTACACTTTACTTCCCACTGGAAAACCTTTTCAAAAAAGATTT TCAGAGTTAGTATTGGTTTTGTATTTATGTATTAATTCTCTGTTTTTCAG CAATAATTTCTCTTTAGCAATGAAGATCTGTTTTGCTGTGTTATTGATAT TGGCTGTCTTGGCCATCGTTGAATCAAGGTGGCGGTAAGTGGTTCACTTT TAAGCCTCAAAATGACCATGTCTTTACTTGTAGCAACTACTTTCTTGAAT ATCGTTTAAAGTTAGTCTTTTCAAGGTTGAAGTTGCGTGAGAGCGTATAC GACTAACAAGGGTATTAACAAAAGGTGTGACCAGTGTGATCAAACCAGAT GGATGGTTTAACAATATGTAAAATCGGCATTTATAAATTCGATTGGGTCA ATAAACCTTGTCGGAGTTTTTGATTTTTCAAAAAGCGATGCATTGTGGGA TTGTTTTGGGGGTATTACAATAGAAATCTCTTAGGAATTCCTCGAGGGAA TTCTACTGTAATACTCCCGAAACAATCCCACAATGCATCGCTGTTTTAGA AAAATAAAAAACTCCGATAAGGTCTATTGGCTTGATAGGACAGTTAAGAT TCGAGATTTTCACTTATTTTCATCTCTACTAGGAGACATAGACGTCATCA CCATTCAAAACATCACCATTCAAAACATGGCTCATCCAAACAGGTTTCTA CAGGCAGTCAAGGAGGAAACCATGATATGAATAATTGGGATTTCTTCATG TTAGTGCAACAATGGCCTCTTTCATCATGCGAGAAAGAAAATGTAAGTTA TTTTAGAACAAACCATTATAAAAATAAAAAGCTTTAATGACCAGAATTTT AAGAATATTTTGCTTTGCGGACTTTAAAACACCGAGATTTGTTGGGAAAA TGGACAAAATAAAACATTGTTAAGAACACCTTTAGCCTTAAAACTCAAAA AGTTAAAAACATCCGAAGGCTTCAAAAATTAATGTGTTCTTATAAAAAAA CGTGTATTTGCGTATTAAATCTATGTAGAGAGTACAGTATTAGCCATCAA AAGTTATGCGTTAAAGAATCTTTCCTTTCCCGGCTAATAAAGAACCTTCC TCTAAGATATCACAGGTTCTTGAGTTAGCTTTCTCACGAAACGTAATAGT TATCGGACATTTGCGAGTACAATATGAGAAATATTTTACGAGTTCCGAGA TTTTTCCGTACAATATTTTCCGAGCCTGTAGGCGAGGAAAATATACGGAA AATCCGGAACGAGTAAAATATTTCCATATTGTACGAGCAAATGTCTGATA ACTGGTCTATCGGTGACCCAAAAAATGCACTTTTTGTGTTGGAAAAAAGC GCAGGGCACTTTCGTAGCAAAGTGACGTTAGATTGCTGCTACCGCTACAA TGCAACAATATCTTTTCGTCAATTTATATTTTGTACATGTAAAATATAAG ATATATTGTACTCTTTTTAACCAATCAGATTGCAGATATTTTTTGGATCG CCGATAAAGAATTTTAAGATTTAAAGAATTCAATAATAACATAGTCAAAC TATTCAACATAAAATTGCACGATTCTACTCAAGTTCCACTCAAGATAGGT GCCTGAAATATAACTCACTTCTTTCTAATCTAAATCGCAGATAATTACAA AACTGCAGTATAAGGAGCATGAATCCGTTTTAGTAGATGCCTACAGCCTA GCTGCTTTCTATACTTTTTCCCTACTTATACTACCTAAAATGATTCCTCT CCACTTCTCCGTTTACCACATTCTAAATTACATTATTAGGTAACACATGA GCACACATGTGTCATCCCAAAGTATGTTGATGGCTGGACACTTCATGGTC TATGGCCTTCAACCAATGTCGAAAAGAATTACCCAACAGAGTGTACTAAT GAAAAGTTTGATCCCGAGGAAGTCAGGGTATAATTCATTTCATATTTTGA CTATATTGTTTTACTCTTTATGATTAGCAAAGTCGATTGAAACCCCCTCA TAATACTGCTATTGTATATGTCACATATGTTATGCGACCGAGAAAGACTT GGTAGCTTTAGGAGTACAGACTAATTTTGTTTTGTTTAGGGCTGTTTGTA GTTCTTTTAATGGTCCAACGCAAGAAGGAGCCTGAATTATAACACGCTTC TTTCTATTGCACGAATCCTTTAGTAGATGCCAGCGGCCTTTCTTCTTTCT ATTCTTTTGACCTACTATTCTTCACCTGAAATGATCCCTCCCCCTTACCG TTTTAACACCCCTTCAAGAAGCTGTTTATGCTAAATGTGTGTCTTTTTTC AGGATCTGAAGCCTCGCATGTTGAAGTACTGGCCCAACATGTTTGTAGAT TCGGACAAGAATCATTTTTGGTAAGAATGTTGTCTGTTTTATTCGAGTGT CTCCTTAATTCGATCAAGCTATTTTGTCTCTCTAACACGAATGTCTCCTT AAAACTCGAACCAGTTATTTTGTCCCTTCAGTTAACAATGTCTTTTAAAC CTTACACCGTAACTCGAGATTTCTTTAACTTTAACAAATTTGTGTTGCAT GTGCGTGTTCGAGTTACGGTGACTCTACAACCTTTTCAAGACTAAATTAA TACCCCTATGACACCATATTTGCAAGCTGACAATATATGCTGCAAAAATT CGCTTTTAAGGTCACGCAATTACAATGTAGCATTAGTGGCATAATAAAGT CTAATTAAAGGAAATACCTCACTGGAAAGATGAATTTAAGGGGATAATTT TGATAATATTAGCGGGCCGGCTAACATTTTTTCTACGGTGCAAACAATTG TATATGACCATGAGAAATGTAAATATCTTTTTGGACCTATCATTTTTCAA TGATACTAATTTTGGTAGCCGGAACTTTCTAAAAATTGTCAGAACAGCCG AGAATCGCCGGAAAACGGATTTTCTTGAATTTCTCGAGCTGTACTTGTTT ATTTGTCATGAAATTTTGCACACTGGTGCAAAATGGCAACCTAAAATGTA AGGGAGCCCGGTTTTCGAAAAACAATATCTTCCCTGCCGAAAATGCTAGA AATATGCCAAAAATAACAGTTTTCATTATTGGTTTTTTGGACCTACCTGG AGGTCCTATAAATTAACCTCTGTTCGTCCGTCCGTCCGTCTGTCCGTCCG TCCGTCTGTTACCAGCTTTTCTCGAGATTGGCTCATTAGTTTTTTCTGGT TTTTGGCACAAAGATGCAAAATGGCAATGCCCAAAATGTGACGGAGCCTG ATTTTCGAGAAAAAAAAATTTTCCGGCCGAAAATGCCGGAGATATGCCGG AAAAACCGGTTTTTTGACATTTTCTCGAGATTTCATCATTAGTTTTTTCT GATTTTTTGCTTAAATATGCGTATTAACAATGCCCAAAACATGACTGGGT CCGATTTTTGAGAAAAAAATTTTTCCAGCCGAAAATGCCGGAAATATGCC GGAAATCACCGTTTTTCTGAATTTTCATTAGACTTTTTCCTTATAATTGG TTGTTTTTTCATTCAAAAACATTTTTAATGGCAATGCCCGCCATCAAGCA TGTTTCAATTTTCAATAAAATTGATTTTTGAAGCCGGAACTATTAAAAAA TCGCCGGAACAACCTATATTCGCCGGAAAGACAGTATTTCTTGAATCTCT CGAGCTATAATTTATATTTTTTTATGAAATTTTGCACACTGATGCAAAAT GACAATACCTAAAATGTGACAGAGCCCGATTTTCGAAAAACATTTTTTTC CGGCTGAAAATGCCGTGAATATGCCTGAAAAACCGGTTTTTTGACATTTT CTCGAATTTTCATCCTTAGTTTTTTCTGATTTTTTGCAGAAAGATGCGTA GGCGCAATACTCAAAACATGACAGAGTTCGATTTTTTGAGAAAATTTTTT TTCCGGCCGAAAATGCCGGAAATCGCCGTTTTTGTTTTCTAGAAACCTTT ATTAAGCTGTGCGTTTTTCTGATAGTGTATTGTTTTTATAAAGAAAAGCG TTTAATAACTTATTTACTTTTTGGACCTACCTCCGGGTGCCCCGGTGGAG GTCCTATAAATTAACCCATGTCCGTCCGTCCGTCCGTCCGTCCGTCCGTC TGTTACCAGCTTTTCTCAGGATTGGCTCATTAGTTTTTTCTGATTTTTTG CACAATGATGCAAAATGGCAATGCCCAGAACGTGACGGAGCCCGATTTTT GAGAAAAAATTTATTTGGGCAAATTTGGGCCAAAAACTACCTAAAAATAG GATTTTTTGGACTTTGTGCAAAAATCCTGTCATTACTTTTTTGATTTTTT GTACAAAGATGGAGTGCAAGATTCTCTAAAGAATGGCTGAAGTGGTTTTT CCCGGAAAATTCTTATTCGCCTTAAAAAGCGGATTTTTGTATTTTGGGGG AAATTCCCTTTAACCAAATAAGAAAATATAGCTTTTCTCAATGTTGACTC ATAATTTTTTTCTGATTTTTTGCACAATGATGCAAAATGGCAATGCCTAA AATGTGTCGGAGCCCGATTTTCGAAAAAAAATATATTTGGGCAAATTTGG GCCAAAAACTGCCTAAAAATAGGGTTTTTTGGACTTTGTGCAAAATTCTG TCATTACTTTTTTCTGATTTTTTGTACAAATATGGAGGGCAAGATTCTCT AAAGAATGGCTGAAGTGGTTTTTCCCGAAAAATTCTTATTCGCCTCAAAA AACGGATTTTCGTATTTTTGGGGAAATTCCCTTTAACCAAATAAGAAAAT ATAGCTTTTCTCAAAGTTGACTCATTATTTTTTTCTGATTTTTTGCACAA CGATGCAAAATGGCAATGCCTAAAATGTGACGGAGCCAGATTTTCGAAAA AAAATATATTTGGGCAAATTTGGGCCAAAAACTACCTAAAAATAGGGTTT TTTGGACTTTGTGCAAAATCCTGTCATTACTTTTTTCTGATTTCTTGTAC AAAGATGGAGGGCAAGATTCTCTAAAGAATGGCTGAAGTGTTTTTTCCTG GAAAATTCTTATTCGCCTTAAAAGACGGATTTTCGTATTTTGGGGAAATT CCCTTTAACCAAATAAGAAAATATAGCTTTTCTCAATGTTGACTCATAAT TTTTTTCTGATTTTTTGCACTATGATGCAAAATAACAATGCCCAAAATGT GACGGAGCCAGATTTTTAAGGAAAATTTTTTTGGGCAAATTTGGGCCAAA AACAGCTTAAAAGGTTTTTTGGGTCTGAATGGTTTAAGTGATTTTCGTAT TTGGGGACAATCCTTTTTACCATTTTACATTATTCAACACACAAGCTTTA TTTTTCCATTCTGAATTTTTGTACAATTATTGTCACTTTTTTTCTTATTT TCATCTGATGTTAATCATTAGGTAGGTCCATTCAGCATGTTGCTTGTTTT TCATAAGTCTATTTCAATAGTATTGATAATTTCTACCAATAGATATGCTT TCATTTTATATATTTTTGTATTTTGACCAGTTATGTCTTATGTGTTTCAT TGTTTCAATGTTCATTGGTTAGTTTTGGTAACCAGGTAGGTCCATAAAAG TATCCCTTGTTCTGATATATGTTACGATGTTATGTATTCATGTAACCATC TCATGATGTTTTTCCGATCTGTGTTCGCTCGTTCGTTCTTTTTCCACGAT TTTTTCCATCATTGCTTTAAACTACAACTAATCGACTTTCCATAACTGGA ACCTCCTCAACTTGATTATCTCCATAAACGCGAAAAAAATTGAGGAGATT CTTATGCTATTCTGCCTCTCTACAACTCAAATTTCCGTAACACAAATAAT TTTACTAACTATCCTCTTGGTGTTCCAGCACTTGACTATGTTACACTTTC CTACTTGCTCTACTCAGGCCCTTTAAGTGGTTCTGAAACGAAAATTCTCT TTTCCCTCTTTTCTAAGATCTCTTCGGTACAGTCTTAAAAACACCGAGAG AGTTGTATGTTCAATGAAAAGGCCTCACGCATCAATCAAAACTTTAATCA TCAGGTAGGTCCAACCAGCGTTCCGTTTATGCTTATTACCTTTGAACTGG CATCTTGATAAATGACATGGTACAGGGCAATACAAAACTTAATCTGTTTG GTCGACAAATTTATCCTTTTTCTTTAATTAGGGCACACGAATATGAAAAG CATGGCACATGCGCAGAAAGTGTTCCAGGCTTTAAAACAGAGCACGAATT CTTTAATAGTGCATTGAACTTACGTGATGAACATGATATTGGAAAGTAAG TAGTTGATTGATTATATATAGCCTGTACAAACCCGCCTGCGGGTGATTTT TTTTCTAATTTTAATATCTTTTCGCGTTGTTTACTCCCCGTTATCTTTTT GGTACTAAACTAATGTAATTATATCAGTGGGAATAGAAAATTTTCTCTTG AGAATACTTCGTTTCTAACAACGATCAATGTTCAATACACGTCGCAAATG GGAACTCTCCCAGGTTATGCAATTCTATTCTAGATGTATAGTAGGCTACT CTTGGTACAATACGTACTTAGGGCGATGTTAAGCATAATACCATCCCGCC CGTGTATCGAGAGAAAAGGATTGGCAGAACCTGGTACTTTTAGGTTACAA ATAAACGAGGGGGTCGCATAAACGGGGGGAGGGGGTTGGAAAATTTTCGA GATTTTGTTAAACGGGGGGACCTAATTGCCGATGAGGTTGGAAATTGTAC TTCTAAAAACCAAAAAACAAGACAAATATTATTAGTTACACGGTCTTCTC GAGGTGGGATACGGGATATACAGGGTCAGTAAAAACCGCATTGGTGGCGG GGCTTGTCGAGTTTTTTTCTCAATCGAATGCGAGGAAGACAGATACGGTT TATATCCCACCTCCGCGTGATGTCTTTCGACCAATGGAATCGCGAGAATC TCACTGATGCGGGATAAAATCAGGCTATTTAGAGCAAAATAAGGGGCCCT CTCTTTGACAGCTGAAAATATTCTTGAAAATTAATAAACGGGGAATCCTA TAAGGTCGGGGGGGTTGGAAAATTTTCAAATTAACAAGCGGGGGGGCGTT TATTTGGAACCTAAGAGTAAGCACGCTACTCTTTTGGTTCTGTACAATGT AAGGTTAATCTCTCTTACTTTCTCTTCGATAGCATTCTTGCCAGTCAAGA AATCACACCACGAGATCAACCATACGAGGTATTCTGAAATGTTCTGTTTA AACTCTCTGACCCCCCTGTTTTTATTGTTAGTTACTCCTAAGAAGATGGT TTATTAGCCCAAACACTGACTATATGTTATATCAACAGAGGCTAACATTT TGCAATCTATTGCTAGAACGCGTCTTCATAAGGGAAAATTTATAAGGTTT TTAACCCATCAAATATCACACTGTCATCATATATAGGATCGCTCAATTTT TTCGGTCCTGAACCAGTATTTTTTATAGTTTCGGCAGGTATGCGCATTTA AATCAATTTTTGTTTTGAAAATTTGAAGTTACAAAAGCTCTAAAAGGGAA GGAAACGTATACTTCTGACCTACCTATCGAAAACATACTTCTTCTAGCGT AAATTATGAAAAATATCTTTTGTAATATTTTTTTTCTTTAGGGTTCTGAT CTGAACGATGCATTGAACAAAGAATTGGGGAAGACAGGATGTGTGCAGTG TCAAAAGATTAAAGTAAGTTAAAACTATTCTGGTACTCCAGTTCTTTGAG TTGAGGGGCCAAGATTCCATTAACACTTGTAGTTGGCAGCTAATCAAATT TTCTGATATTTTACAGTATCTCTTTTATTGAGGCAGATGACGTCCTTCAT TTTTGACTAAAGAACCTACAACACTAACAGCTCGGTTGACTTTTGAATAT TCGGTATTGAATTTACAAGAAAACTCGAACCCAGTTCCCTCACGCTTTAA AGGTTGTTATATGTATCATTAAATTGTCAACAAAACATCCACCAAGCGCG TTGGAGGGCCGAAATTTTCAAATCATTTTATATCAATCCCTTTTCCCACC TCCAAACACCCCAAGTGACATAGGCAGGCGGTATAAAAAACCCACTGAGA ACCCTTCCTACTGGAAAAATTGTCCAAAATATCGTCCCCGTTGGGAAATT AATTATCCTCCAATTTTCCCACTGATAATAATCAAGTAAACCAATCCTCG CTGCAAAATATTATGCTTTTTTCACATCCCCACTGAATTTTCTGACTTGA AAACAAAAGAATTTGAAATCCCCAGCCATAAAAAATATGGGAATATCAAT TCCAATCGAGTTTCAGTCAATTATTTTTATACCCACTGGCTGAAAAAATT CTATCGAGTCTGTGAGAAGGGGGTTTTTATAAAGGGTAACAGTGTTTTAA AAGGTAACATTAAAATTAAAAATCTTTTTTATGACAGGATATTGGTTATG TCATTTCGGCTGCCGTAGTTTGTCTGAGTAAATCAAAAGAAGTGATCGAT TGTCCATATTGTGAACATAAATGTTTGGATGAAGACAAAGTTTACTACCA ACCCATCCGGGGATAA

Coding sequence (CDS) from alignment at sc0000006_pilon:2008736..2017801-

>XLOC_041640 ID=XLOC_041640|Name=XLOC_041640|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1752bp|location=Sequence derived from alignment at sc0000006_pilon:2008736..2017801- (Clytia hemisphaerica_ch_hm2_pilon)
CAAGACATATTTCAGTACAATTTTAGCCGTTCAAGATTACTTCTCTTAGT
GATAAGTACGGTAAGCAAGACATATTTCAGTACAATTTTAGCCGTTCAAG
ATTACTTCTCTTAGTGATAAGTACGGTAAGCAATAATTTCTCTTTAGCAA
TGAAGATCTGTTTTGCTGTGTTATTGATATTGGCTGTCTTGGCCATCGTT
GAATCAAGGTGGCGCAATAATTTCTCTTTAGCAATGAAGATCTGTTTTGC
TGTGTTATTGATATTGGCTGTCTTGGCCATCGTTGAATCAAGGTGGCGGA
GACATAGACGTCATCACCATTCAAAACATCACCATTCAAAACATGGCTCA
TCCAAACAGGTTTCTACAGGCAGTCAAGGAGGAAACCATGATATGAATAA
TTGGGATTTCTTCATGTTAGTGCAACAATGGCCTCTTTCATCATGCGAGA
AAGAAAATGAGACATAGACGTCATCACCATTCAAAACATCACCATTCAAA
ACATGGCTCATCCAAACAGGTTTCTACAGGCAGTCAAGGAGGAAACCATG
ATATGAATAATTGGGATTTCTTCATGTTAGTGCAACAATGGCCTCTTTCA
TCATGCGAGAAAGAAAATGTAACACATGAGCACACATGTGTCATCCCAAA
GTATGTTGATGGCTGGACACTTCATGGTCTATGGCCTTCAACCAATGTCG
AAAAGAATTACCCAACAGAGTGTACTAATGAAAAGTTTGATCCCGAGGAA
GTCAGGGTAACACATGAGCACACATGTGTCATCCCAAAGTATGTTGATGG
CTGGACACTTCATGGTCTATGGCCTTCAACCAATGTCGAAAAGAATTACC
CAACAGAGTGTACTAATGAAAAGTTTGATCCCGAGGAAGTCAGGGATCTG
AAGCCTCGCATGTTGAAGTACTGGCCCAACATGTTTGTAGATTCGGACAA
GAATCATTTTTGGATCTGAAGCCTCGCATGTTGAAGTACTGGCCCAACAT
GTTTGTAGATTCGGACAAGAATCATTTTTGGGCACACGAATATGAAAAGC
ATGGCACATGCGCAGAAAGTGTTCCAGGCTTTAAAACAGAGCACGAATTC
TTTAATAGTGCATTGAACTTACGTGATGAACATGATATTGGAAAGGCACA
CGAATATGAAAAGCATGGCACATGCGCAGAAAGTGTTCCAGGCTTTAAAA
CAGAGCACGAATTCTTTAATAGTGCATTGAACTTACGTGATGAACATGAT
ATTGGAAACATTCTTGCCAGTCAAGAAATCACACCACGAGATCAACCATA
CGAGCATTCTTGCCAGTCAAGAAATCACACCACGAGATCAACCATACGAG
GGTTCTGATCTGAACGATGCATTGAACAAAGAATTGGGGAAGACAGGATG
TGTGCAGTGTCAAAAGATTAAAGGTTCTGATCTGAACGATGCATTGAACA
AAGAATTGGGGAAGACAGGATGTGTGCAGTGTCAAAAGATTAAAGATATT
GGTTATGTCATTTCGGCTGCCGTAGTTTGTCTGAGTAAATCAAAAGAAGT
GATCGATTGTCCATATTGTGAACATAAATGTTTGGATGAAGACAAAGTTT
ACTACCAACCCATCCGGGGATAAGATATTGGTTATGTCATTTCGGCTGCC
GTAGTTTGTCTGAGTAAATCAAAAGAAGTGATCGATTGTCCATATTGTGA
ACATAAATGTTTGGATGAAGACAAAGTTTACTACCAACCCATCCGGGGAT
AA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_041640XLOC_041640-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000006_pilongenomesc0000006_pilon:2008736..2017801 -
Properties
Property NameValue
Aaloc748-876:130
Aaloc676-747:926
Aaloc631-675:1384
Aaloc517-627:2385
Aaloc448-513:6215
Aaloc310-447:6728
Aaloc151-309:7884
Aaloc67-147:8416
Aaloc1-63:9067