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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000006_pilon:1996193..2001153+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_041618 ID=XLOC_041618|Name=XLOC_041618|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4961bp|location=Sequence derived from alignment at sc0000006_pilon:1996193..2001153+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTGAGAGTTTTGATAACCATTGCTTTACTTGGAGTTGCTTCCGCAGC
TGTTTCAACCAAGATCGCCAACTGGTGGACTACATTTGATCATGGTGGTT
GGTCCAAATGTGCTGATGGCCATTTCCTGACTGGTATGTGGAGAAGTGCT
CGTCAGATTGGAGATGAAAGAATCGGCAGAATCGAAGAAGGAGATTGTAA
AAGTGCTGACAGTGCATATACCGGAGATTGCAAACAAATGGATTGCTACA
AGCTGAATATCTGGtcaattttcgacaaaaaaggTTGGGCAACATGCAAA
CCTGGCTACTTTATCCAATCCATCTTTTCCACCAAAGGAAAAAACCTTCA
CAACATCGAGGAATTCCAATGCTGTAAACCAAGATCTAAGAAAGTCAAGC
AAGGTCAATGCTACATCCAAAATGTTTGGCAATCCTTTGACAACAAAGGT
TGGTCTAAATGCAAAGCTGGATATTACATGCAAGGTATGTTCAGAAACAG
CTGTGACAAATTGTATTGTCTTGAGGAATTCAAATGCTGTAATATGGTCG
CTACAGACTCGTCTGTCTCAACCAAGATCGCCAACTGGTGGAGTACATTC
GACCATGGTGGTTGGTCCCAATGTGCTGCTGGACATTTCCTGACTGGTAT
GTGGAGAAGTCCTCGTCAGATTTTCGATGAAAGAATCGGCAGAATCGAAC
AAGGAGATTGTAAATCTGCACCAAAGAATCTTGGATCTGGACAAGAATGC
TACAAATTGAATATCTGGtcaattttcgacaaaaaaggTTGGGCAAATTG
CAAACCTGGTTATTACATGCAGTCCATTTTCTCCACCAAGGGAAAGGGCC
TTCACCACATCGAGGAATTCCAATGTTGCAGACCTAAAGGAGGGGTGACA
GTTGATGGTCAATGCTACATCCAAAATGTTTGGAAATCCTTTGACAACAA
AGGTTGGTCTAAATGCAAAGCTGGATATTACATGCAAGGTATGTTCAGAA
ACAGCTGTGACAAATTGTATTGTATCGAAGAATTCAGATGCTGCAGCATG
AAACAAAAATGTTGAGAGACATTCTGGATAAtatagaatttctttttcat
tttcaatcttatAAGGCGTTAAGGGAATGAGTATTTAGAATTTCAATAGT
CGATTTGTAGATCATTTACCAAATATTTAATCTACTTGTACTTCACTATG
AGCTTTTTTCTCACAATAGATTTACTGACTTGcatttaaaaattacaaaa
agtttctttgatACTTTTCACACCCCGCCAATACTCCaataaaaacaccc
ccttctcacagacccactgggaccccttcccacttggccaaaatatcgtc
cccttTGGAGAATTATCCTGCAATTTTTGCCCCCACTGAAATTAATCGAA
TAatccaatcctcactgcaaaatatttactatttttcccatccccactga
attttctgacttgaaaacaattgaatttaaaTCCCAACTCGTAAATACTC
GtaatatgagaatatcaatccccagcAAATTTCtatcccactggctgaaa
aagccctaccggggctgtgaaaagggggtgtataaaaaatttaaaggcAT
TAATTATGTTACAAATATGTTCAAACCATCGCGTACCATAAACTCTACTG
TTCTGATGGTTATTAATCGGAACATCAAATGTAAAGTCCTTTTCATCTTG
AAATTTCACGATCTTTTCGATACTCCGTTTGTGAGAAAACCTGTCTGCTA
AAAGCACCATCTTTTTCCGTTCGTctttgtttacaaatctttttgaGGTC
AATTCTTGGACAACTTCAAAAAATATCTACAAAATGTGTAACCGGTACAT
CATGTGCCCGAGTttaggagttgccataaagccattatggtaataaccgg
gagggcacattgctatacattgtagaAATCAtctaaattttagatttttt
ttctagatTCCTTCAcgactttcaaatttttaaagggCGCAGTAAATAAA
AAGGTGGAACCTAACCCCCaaaaaaaTCTTGACTGAAAAGTGAACGATAC
GCCAGTTATTTAAGTTTTAATTTTGAACTCCAATTtcatgcccccccccc
ggtaCAAAAGATTTCGCCTGATAAAAAATATTAGTAAGCATgctgaatga
aaatgaaaatattcaaacgAAAAAGGAAAGATAACAGCATAGCATAGAGA
AGGGTAAGCTTGAAAACATGATGAAACTTGTTTCACAATGGCTTGCCGAT
GTTTTAGGGCTAAGGAGCATTGAAATCAAACCATGACTAGTTTTAGGCAT
AAAAACACAACCCTTACGTTCCTATAAAGATAGCTTTAACTCTTTAAAGG
TAAAATCTAATGAAACTTCCACAAATCcgaaatttggcccaaatttgtct
aaacaatttcttttgaaaatctttgaagttATAAATTTTAAGGGTTACAG
TATAAATTGAAAAACACGTCGAAAATTTGGCTTcgtcactttttgggtac
tttcaTTCtgcatcactatgcaaaaaatcagaaaaaaataataggCCAAT
cacgagaaaagctggtaacagacgatcaaacgaacgaacggacgaacaaa
gcttaaattaaaggacctccgaggggTTGAGatccaaaaagaaaattagC
TCCTAGAATGGGGAAAATAGCGTAAAAGTTTCCAGTGAGGAtaggtttat
ttgattattttcagtggggacaaaaaatggagaataattttccaccgggg
atgatattttggataatttttccagtgggaaggggtctgtgagaaggggg
tgtcataATAAACAATCTGTTaacttttcattaaattttgatcaTATTAT
ATTGTTATATAAgataaagattttaagatcTTTCAGGATCGTTTCTCTTT
CGTCTTTCGATACCTAGGTATCTCTGAAAAGTGGtagacaaaattaaaaa
tagccAACATTTACTTGACGATCTCACATATTTACTGAGAAATTTCAATG
TTGACttacaaaattcacaaaaaaagtaTGGCATTCTAAttttgccattt
cttttgttttgttttttccatggtgaattttaaaatatatggctgcatga
acatataaacgactggacatccatctcctttgtatttttgaagataacac
tgctagcttcgttgccgcctcgttaaaatcatcaaacgaaacaataaatt
ctgatggtatacctcttgggaataccttgctaacaacgtcaaaatttcga
caaaagtctttgttgttctacttttctcaagtcttttatctatatcataa
caaagataacagaggcaaaatcatcgtcagcttgtcaaaactccgactaa
tatttccaaattttgacttaaaagtgtctaataattttagagagtgtcac
attctaatttcaatattcttatggcacaggctctcaactttggcaagcta
tttttttcaagtcatgaaaaaaattattggagtgacaaaagggattcaaa
agtatacacgcagttgaaattctgcatttcagagttgaaaatgttgataa
aatatattgcaaactcgtgaaaaaatttgaaaataatttttttgtgcatt
aggagtaatgtgcaagctctatcaatcattttacctaaacaattcaaaga
aataaaattacgacggaatattgtcggattttttatagcaattttgaaat
acaggcggcaacgaagctcgcttcaaagagacaataaaagatagatgtcc
agtcgtttatatgtccATGATGGCTGTAAATGACACTTTCGATATTTGGC
GTGAAAGAAAGAGTCCCATTCAATTAAAgtacatttcaaattagctggca
gtaaattttcaattgcgtattacttttgatagatttcgaattagatagcg
attttatactttttggaaaggcaatccggagtggaatattatgcgtataa
aatttttctaaaattttcaaacacaaagatgaaaaacgaaaaagaaaaaa
ttcagcTTTTTATCTAGCAATGCTATAACTACCATTTTTGGACTTGAGAA
ATTTCAATCTTTGCCCATGCCagctgtgaaaaaaaaaacaattcagtcGA
AAAGATATTGGGCACGAAAGGAGGCTAGTTAAATCTTATTTAGGGACGAG
GTTGCATAaggtttttatatattttcttttaaaacatgttgatttatgaa
aatatgaaaaaagtattggtcagattttccaaaatttagtCCGAAAGCTT
TGTTTTTCTCCCTTTTTACATACACCCTTTACGATGCACCtcggaaaacc
tgaaaaacgtAGAGTATCCTTAACGACCGCGCCTACGATatttggctttg
aaaaatattaaaaataactttaaacTTAAAGTCTAGGATTTACAATCCTG
TTGAATTGCTTTCAACCTTCATTCATGCTAATTCCAATAAGATTTGAAAT
CATAAGAAATTCTTCCCATGTGAGCGTCTTTTTggcataaaaaaaaacta
atgacaaTAAATTCGAAAGAAAGAAACTTCAGTGTATGGGTTGGTAATAA
ACAATATCGTCATCATAACATTCTCCTCTACAATAAGGACAGTTGACCAA
TTGTAAGGATTTGTTGAAACAAACGCTTGTACTCATCAATACATATCCAT
CAATACCCTAAACGAATAAAAGTAAGAGTGTTGGGAGTAGGGTGGATTTG
CATCACTATTAAACCCACTgaaaaaatttggctgaaatttcgtTCCCAGT
GGAAAAGAATGTCCTATAATTTGAATTATTTCAATGTAAAGATTGACACT
TCTAAAGCATTCCCGTTGGGTTTTTGATATTGGAACAATAGGATTTCTAT
CCATATTGAATTTCTATAGAAAGGATATTCAACCGgggcagtgagacagg
ggtgtgtaaaCCAACTTACTTTGACTCTTTTACAGGCGGCGCACCCTTTA
GCGTTCAATCC Coding sequence (CDS) from alignment at sc0000006_pilon:1996193..2001153+ >XLOC_041618 ID=XLOC_041618|Name=XLOC_041618|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2028bp|location=Sequence derived from alignment at sc0000006_pilon:1996193..2001153+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTGAGAGTTTTGATAACCATTGCTTTACTTGGAGTTGCTTCCGCAGC
TGTTTCAACCAAGATCGCCAACTGGTGGACTACATTTGATCATGGTGGTT
GGTCCAAATGTGCTGATGGCCATTTCCTGACTGGTATGTGGAGAAGTGCT
CGTCAGATTGGAGATGAAAGAATCGGCAGAATCGAAGAAGGAGATTGTAA
AAGTGCTGACAGTGCATATACCGGAGATTGCAAACAAATGGATTGCTACA
AGCTGAATATCTGGtcaattttcgacaaaaaaggTTGGGCAACATGCAAA
CCTGGCTACTTTATCCAATCCATCTTTTCCACCAAAGGAAAAAACCTTCA
CAACATCGAGGAATTCCAATGCTGTAAACCAAGATCTAAGAAAGTCAAGC
AAGGTCAATGCTACATCCAAAATGTTTGGCAATCCTTTGACAACAAAGGT
TGGTCTAAATGCAAAGCTGGATATTACATGCAAGGTATGTTCAGAAACAG
CTGTGACAAATTGTATTGTCTTGAGGAATTCAAATGCTGTAATATGGTCG
CTACAGACTCGTCTGTCTCAACCAAGATCGCCAACTGGTGGAGTACATTC
GACCATGGTGGTTGGTCCCAATGTGCTGCTGGACATTTCCTGACTGGTAT
GTGGAGAAGTCCTCGTCAGATTTTCGATGAAAGAATCGGCAGAATCGAAC
AAGGAGATTGTAAATCTGCACCAAAGAATCTTGGATCTGGACAAGAATGC
TACAAATTGAATATCTGGtcaattttcgacaaaaaaggTTGGGCAAATTG
CAAACCTGGTTATTACATGCAGTCCATTTTCTCCACCAAGGGAAAGGGCC
TTCACCACATCGAGGAATTCCAATGTTGCAGACCTAAAGGAGGGGTGACA
GTTGATGGTCAATGCTACATCCAAAATGTTTGGAAATCCTTTGACAACAA
AGGTTGGTCTAAATGCAAAGCTGGATATTACATGCAAGATGTTGAGAGTT
TTGATAACCATTGCTTTACTTGGAGTTGCTTCCGCAGCTGTTTCAACCAA
GATCGCCAACTGGTGGACTACATTTGATCATGGTGGTTGGTCCAAATGTG
CTGATGGCCATTTCCTGACTGGTATGTGGAGAAGTGCTCGTCAGATTGGA
GATGAAAGAATCGGCAGAATCGAAGAAGGAGATTGTAAAAGTGCTGACAG
TGCATATACCGGAGATTGCAAACAAATGGATTGCTACAAGCTGAATATCT
GGtcaattttcgacaaaaaaggTTGGGCAACATGCAAACCTGGCTACTTT
ATCCAATCCATCTTTTCCACCAAAGGAAAAAACCTTCACAACATCGAGGA
ATTCCAATGCTGTAAACCAAGATCTAAGAAAGTCAAGCAAGGTCAATGCT
ACATCCAAAATGTTTGGCAATCCTTTGACAACAAAGGTTGGTCTAAATGC
AAAGCTGGATATTACATGCAAGGTATGTTCAGAAACAGCTGTGACAAATT
GTATTGTCTTGAGGAATTCAAATGCTGTAATATGGTCGCTACAGACTCGT
CTGTCTCAACCAAGATCGCCAACTGGTGGAGTACATTCGACCATGGTGGT
TGGTCCCAATGTGCTGCTGGACATTTCCTGACTGGTATGTGGAGAAGTCC
TCGTCAGATTTTCGATGAAAGAATCGGCAGAATCGAACAAGGAGATTGTA
AATCTGCACCAAAGAATCTTGGATCTGGACAAGAATGCTACAAATTGAAT
ATCTGGtcaattttcgacaaaaaaggTTGGGCAAATTGCAAACCTGGTTA
TTACATGCAGTCCATTTTCTCCACCAAGGGAAAGGGCCTTCACCACATCG
AGGAATTCCAATGTTGCAGACCTAAAGGAGGGGTGACAGTTGATGGTCAA
TGCTACATCCAAAATGTTTGGAAATCCTTTGACAACAAAGGTTGGTCTAA
ATGCAAAGCTGGATATTACATGCAAGGCGGCGCACCCTTTAGCGTTCAAT
CCGCGGCGCACCCTTTAGCGTTCAATCC
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000006_pilon | genome | sc0000006_pilon:1996193..2001153 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 991-1014:4938 |
| Aaloc | 1-987:1 |
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