|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000542_pilon:85140..88589- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_041572 ID=XLOC_041572|Name=XLOC_041572|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3450bp|location=Sequence derived from alignment at sc0000542_pilon:85140..88589- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCTGCATTACACAGACGAGCACTTGTAAGTAGATACATTTAACTTTT
TGATGCACGATTTTTGACGTTTCATAGAATTTTTTATTAGTTCCAGAGCT
ATTGTATGTTTGTTCTATCATATTTGAAAATATCTGAGTTGTACACTCTA
TTTGTCTAATTATGGAAACAAATGGCATTAGTCTCACCTACCTAGTGTTT
CAAGATCCGAACTTAACAGTGTAAAATGTTTTTTGAATATGTCCATTTTA
TTAAATAAAGGTTGGGATCAGGCTGGATCTTGACCTGAATTTTGTTGCCG
GCTCGTAAAAAATATTTTATAGTTCCTGTCACCTGATCAACCCTGATTTT
CAGCCCTGGGTTGGGGGGTACTAGGTATTTTTACGGTACACATGTATTTT
TACAACCGCTGCAATGCAAACAGAGCAATTTTTTGGATGGCTGCCTAAGA
GATGTTGAATACCATGTGATCAACTATTGCCAAAAACAGCAATTTTCATT
TATTTTCTGCTGACTTTGCATTTCGTCGTAAAGTATTTCCCTCTTCGGCA
ACATTATTTGCTGATAAAAGAGCAATTTAAATGATATTTTTGTCTAAAAC
AGTGACTCTAAAATACTCCACGGTAAGGTTTGGTTAGCTGTATATTGACA
TTTCCAACACTTTCTTACCTGGAGAGAATATATTTGAATAATTTATTTTC
CAGGACAACCTCCGAAGTGAGAATGCAACATTAAAACAAGGACAAGTTAA
AGCAACCAAAAACACTTTAAATCGACCAGCTCTTGCAAATATTTCTAATA
TTCAACGAAGACCTGCACTAGGAACCAAGAAGGTATGTATTTCAAAATAT
ATTTCACTTCTCAAATTATGTAAACTAACACATACCTTCCAAAAAGTTGA
AGAAGGGGGAGGTCAGAAATCTTTATGAAAAAGGGGGGATAGCAAGGAAG
GGGGGACAGTTTAAGAAGGGGGGCTTACATATATATTGTAGAATATTTTC
AAGCATTGGTTATAAAATTTGGTTAGGGGATGCCAAGAAGGGGATCAGAC
CCCTTTCCGCACTTATGTAAGATAATGTTCGACAAACAGTTTCATACTAT
TCCATTAATTGAATCATGACCAAAAGGGACATTTCACCCAGTTCTGCCCA
GTTGACAAAGTAAATTCTTTCACTTTGACAATTGCACAGTTTCTATGAAA
CATGTCAGGCCATTTTCTAGAAAGACAAGGAAGCGTCAGCTTGGAACCAA
AAAGGGCACTTTTTCTGGTGATTTTCTAACAAAACTAATTACTACTAATT
TCCACATATTTGTAACTTTTTGTTGGGGCAGCGTCTGATAATCGGACCCT
TAAAAGGCATAAAAAATGTTATAAAACTCTTCAGTGATTGCCTTTCCATT
ATTAAAGCTTGAATATTTGGACGGGTCACAGGCAAGAAGCAACAAAAATT
ATATAAAAAAATAAAAAATGGCCTGCATGATTTATAAGACAGTGCTTGAT
TGAAATTGTCTTAACTCTTTTTTTCAGAAGGATGAACATAAAGAGATAAC
AAAAGGTCTCACTAGACATAAGGCATCAACACATCTCACAGCTACTGAGA
AAAAGGATGTCTTCATTTTCCAAGATGATAGTGAAGAAGAAACAAGACAA
TTTGAGAATGATCAAATAGCAAAACTGACAGAACAAATGGCAGAGATTGA
TGTTGAAGATATTGATGCTGATGATTTGACCAACCCCTCACTCTGTGCAG
AATATGTTAAAGATATCTACAAATATATGCATGTCCTTGAGGTAAGTATT
TTACTATATGCACCCTTCACAAGATTCTAAATGAATTGCTGTTAAGAATT
ATTGTTCTATGTGACTATTCAAGTGATTCAAAGGACATGAAATTCTTAAT
ATGTTACCTTCAAATTGCTGGCTTTTTTCTTTGTTATCAGCAAAGTGTTC
AATGGGCAAGCCTATTTTCTTTAAATACGATTTTGACGTCAAACTGTCTT
CCACCTTCTGGTTGCAATTGATGGATTGCCTGGCTGAATAAAAGTATTGC
CAGTAAGATGCTGATAGATTTGCTTGTATTAGTTGGAAGAATTCTTCACG
TGGTTAAAATCCCTTGGAGATTCAAATCATATAACTTTATTGCTTGCCAG
TCTTATATTTTGGTTATCTAATTTTTCAGAAAAAACTTCAACCTAAAGAT
TACATGTCACGTCAAACGAATATCAATAAAAAGATGAGAAGCATTTTAGT
TGACTGGCTCATTCAAGTACAATCCAGATTTAGACTCCTCCAAGAAACTT
TATATTTGACAATCTACACAATCGACAGATTTCTTGCTGTAAGTCTATTT
TTTCTTCATAAGTTGCATAGCAAGTGCCCAAAAACAATTCCAAAGTTAAT
TCAAAAAGATAATTTTATTGCTTGTATTTTGTACATTAAACTCTATGTTA
AGAACGGAAGTTGAATTGGATCAAACATTGTGTTTATAGATAATATCTTT
CAAGCTTTTTTACTTAAAATCCCTTTCCATATTATCATATTATCAGAAAT
GTGATGTCAGTCGATCAGAACTTCAACTGGTTGGTGTGACAGCTATGCTT
ATTGCATCCAAATATGAAGAAATGTATGCTCCCGAAATCGGTGACTTTGT
TTACATCACAGACAATGCATATTCCAAGGTGAAAATCAGAGCAATGGAAC
AGAAAATGTTGAAAGCTTGTGAATTCGACTTCAGCAACCCACTTGCCCTG
CATTTCCTGAGAAGAAATTCAAAGGCTGGAGCTGTAAGTATATAGTATAG
ATTTGCTTGATATACATGAACTCAGGCATTATATTGTCCTACTGGAGACG
GTCATAGTTTTCTTAACAACGTAGTAAAGTCCATACATTTTCTCAACTTT
TCTTTTCACAACAAACAGGTTGATGCCACAAAACACACAATGGCAAAATA
TTTAATGGAATTAACACTAGTTGACTATGATATGGCAACTTTGTTACCGT
CACAAATCGCTGCAGCTGCCAGCTACTTATCCACACAATTACTGGACAAA
GAGAAGGCTGAATGGGTAAGACTTTCCTTTTCCATTTTAGAGCAGCGTTT
CTTGTTTTTCCCACAGGGGCAAACCTGGAAACCAAACTGCTACAGGTCCA
AGGTCTAAGTCGGGCATAAATTGATTTTCACAATAGTCGATTATTTCAAT
GTGATATTACAAATCTTTATTTTCTTTATAGACTCCAACGTTAGCACACT
ATAGCACTTATTCAGAAGCAGCCATCTTCCCAATCGTTTGTCAAATGGCT
AAGCTTGTGTTGACCATGAACATGGAAGGTTCGAAATATCAAGCAGTCAA
AAGTAAATACGCTGAAAGCAAATTTATGAAAATTAGCCGATACCCTGTAC
TGGTTGGACCTTACATGCGCGAATTGGCAGACCAAGTCGACAATGCTTGA
Coding sequence (CDS) from alignment at sc0000542_pilon:85140..88589- >XLOC_041572 ID=XLOC_041572|Name=XLOC_041572|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2364bp|location=Sequence derived from alignment at sc0000542_pilon:85140..88589- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCTGCATTACACAGACGAGCACTTATGGCTGCATTACACAGACGAGC
ACTTGACAACCTCCGAAGTGAGAATGCAACATTAAAACAAGGACAAGTTA
AAGCAACCAAAAACACTTTAAATCGACCAGCTCTTGCAAATATTTCTAAT
ATTCAACGAAGACCTGCACTAGGAACCAAGAAGGACAACCTCCGAAGTGA
GAATGCAACATTAAAACAAGGACAAGTTAAAGCAACCAAAAACACTTTAA
ATCGACCAGCTCTTGCAAATATTTCTAATATTCAACGAAGACCTGCACTA
GGAACCAAGAAGAAGGATGAACATAAAGAGATAACAAAAGGTCTCACTAG
ACATAAGGCATCAACACATCTCACAGCTACTGAGAAAAAGGATGTCTTCA
TTTTCCAAGATGATAGTGAAGAAGAAACAAGACAATTTGAGAATGATCAA
ATAGCAAAACTGACAGAACAAATGGCAGAGATTGATGTTGAAGATATTGA
TGCTGATGATTTGACCAACCCCTCACTCTGTGCAGAATATGTTAAAGATA
TCTACAAATATATGCATGTCCTTGAGAAGGATGAACATAAAGAGATAACA
AAAGGTCTCACTAGACATAAGGCATCAACACATCTCACAGCTACTGAGAA
AAAGGATGTCTTCATTTTCCAAGATGATAGTGAAGAAGAAACAAGACAAT
TTGAGAATGATCAAATAGCAAAACTGACAGAACAAATGGCAGAGATTGAT
GTTGAAGATATTGATGCTGATGATTTGACCAACCCCTCACTCTGTGCAGA
ATATGTTAAAGATATCTACAAATATATGCATGTCCTTGAGAAAAAACTTC
AACCTAAAGATTACATGTCACGTCAAACGAATATCAATAAAAAGATGAGA
AGCATTTTAGTTGACTGGCTCATTCAAGTACAATCCAGATTTAGACTCCT
CCAAGAAACTTTATATTTGACAATCTACACAATCGACAGATTTCTTGCTA
AAAAACTTCAACCTAAAGATTACATGTCACGTCAAACGAATATCAATAAA
AAGATGAGAAGCATTTTAGTTGACTGGCTCATTCAAGTACAATCCAGATT
TAGACTCCTCCAAGAAACTTTATATTTGACAATCTACACAATCGACAGAT
TTCTTGCTAAATGTGATGTCAGTCGATCAGAACTTCAACTGGTTGGTGTG
ACAGCTATGCTTATTGCATCCAAATATGAAGAAATGTATGCTCCCGAAAT
CGGTGACTTTGTTTACATCACAGACAATGCATATTCCAAGGTGAAAATCA
GAGCAATGGAACAGAAAATGTTGAAAGCTTGTGAATTCGACTTCAGCAAC
CCACTTGCCCTGCATTTCCTGAGAAGAAATTCAAAGGCTGGAGCTAAATG
TGATGTCAGTCGATCAGAACTTCAACTGGTTGGTGTGACAGCTATGCTTA
TTGCATCCAAATATGAAGAAATGTATGCTCCCGAAATCGGTGACTTTGTT
TACATCACAGACAATGCATATTCCAAGGTGAAAATCAGAGCAATGGAACA
GAAAATGTTGAAAGCTTGTGAATTCGACTTCAGCAACCCACTTGCCCTGC
ATTTCCTGAGAAGAAATTCAAAGGCTGGAGCTGTTGATGCCACAAAACAC
ACAATGGCAAAATATTTAATGGAATTAACACTAGTTGACTATGATATGGC
AACTTTGTTACCGTCACAAATCGCTGCAGCTGCCAGCTACTTATCCACAC
AATTACTGGACAAAGAGAAGGCTGAATGGGTTGATGCCACAAAACACACA
ATGGCAAAATATTTAATGGAATTAACACTAGTTGACTATGATATGGCAAC
TTTGTTACCGTCACAAATCGCTGCAGCTGCCAGCTACTTATCCACACAAT
TACTGGACAAAGAGAAGGCTGAATGGACTCCAACGTTAGCACACTATAGC
ACTTATTCAGAAGCAGCCATCTTCCCAATCGTTTGTCAAATGGCTAAGCT
TGTGTTGACCATGAACATGGAAGGTTCGAAATATCAAGCAGTCAAAAGTA
AATACGCTGAAAGCAAATTTATGAAAATTAGCCGATACCCTGTACTGGTT
GGACCTTACATGCGCGAATTGGCAGACCAAGTCGACAATGCTTGAACTCC
AACGTTAGCACACTATAGCACTTATTCAGAAGCAGCCATCTTCCCAATCG
TTTGTCAAATGGCTAAGCTTGTGTTGACCATGAACATGGAAGGTTCGAAA
TATCAAGCAGTCAAAAGTAAATACGCTGAAAGCAAATTTATGAAAATTAG
CCGATACCCTGTACTGGTTGGACCTTACATGCGCGAATTGGCAGACCAAG
TCGACAATGCTTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000542_pilon | genome | sc0000542_pilon:85140..88589 - |
Properties
| Property Name | Value |
|---|
| Aaloc | 964-1182:220 |
| Aaloc | 817-963:533 |
| Aaloc | 580-816:905 |
| Aaloc | 421-579:1272 |
| Aaloc | 157-420:1924 |
| Aaloc | 28-156:2748 |
| Aaloc | 1-27:3451 |
|
