XLOC_041569 (mRNA) -

Overview


Name	XLOC_041569
Unique Name	XLOC_041569
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000649_pilon:3624..8387+
coding sequence from alignment at sc0000649_pilon:3624..8387+

mRNA from alignment at sc0000649_pilon:3624..8387+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_041569 ID=XLOC_041569|Name=XLOC_041569|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4764bp|location=Sequence derived from alignment at sc0000649_pilon:3624..8387+ (Clytia hemisphaerica_ch_hm2_pilon)
gtagacTTGCTACCTACCTTCCTAGGTCAGACATTTCGTCTGGAGCTTTT
CGCCAGACGGTACGGTGTTCAAAATTTCGATTGAACAAAATATGGAGAAA
GAAGCTGCAACCACAAACTTGTCACCCAGTATTTTCTTGACAGGTATATG
ATAATTCTTATATCCACATTCCACAagcttttttcttcattatcatTAAT
Ttgatattgggccattccagaaaaaaaacattaccccctaattaatggat
gacatcaatttttgaaataaattttggcacggaattccaggcaaacttta
aagagaaagtatcggaattcctgaattttacttaattttgcattaaagta
ttggaattccatgatttttttaggttacagtaacggaattccacgATTTT
GATACTgtaggtattttgtaaatttgttacggaaattctGGACTTTCCTG
ctgaaagcaatttgctacggaaattccatgtcttccattggggggggggg
ggtaacgaataaaaactggaatggcccattgttgTTACAGTCTTCATACT
TTTAAAACTTACCTATTCTTGCAATCtgtcaaaactttgtttttgtgttt
caaCAAAATTGCAAACTAGTCCAACACTTTCTAGTTCGATGACAAAACAG
TCCAAATCCAGCTGAAATGTAATCAGCTCGCGAGTATGTATCTATTCTTG
TCTGAAAATAGAGGCTGATagtcccatgttcaatgttctTTTATCAATGA
CGTGCtttttttCCTTCTGGTAGTGTGGCcataaaatggccaaaaataac
CTTTTCCTACTTTTCACTAGCTAATCAGTAGACTCTCTCCTTCCCACaac
aaaatgtattttttattttcatatttgactaaagaacaaatttattttat
atatatatatacaagCCATTTTTAAACAAGTCTGTGTGTAACAGACATGC
AGGCTTATTACCTGCATTATTTcagaattttgatattctttccTCTGACa
aaaaaaTATGACCATTGATGGTACTGTTTAAAATAGAATTTCATGATTTG
CTGCCATTTTTGTACAGATGTGTCTGTGGTCGAATccttcagttagggaa
accatcaaggatcctgccattctgtaagccagcaaaaactaaatgacacc
aGTAAACTTAACTTTCTTatcattttccatcgaaaacaactaaaaacatt
gctacttcccaaagccgaagaccaaaacaaattatcttccaagattatgg
cactcttttggatctattgttaaggccatctaaaatggtggaaagagttg
cggaaaaacaaaggcgcccgctgcttcgagggtggtaacgccaaaacggc
caatatgatcttccaacagaaggcgagttagtcgCTGcacgagttacgtc
atgcactccaccgcagcccacaacgaagcgtgtttcaatgaatatcatta
attataagaatatcttatgtgcttaccttcagtaaactttgtgcttcatt
gaaaatgaagaaggtaagaagataaaaaatgtgcaACAGTTCagtcaatc
atcgctgaaagtttgaaaaagtttttccaacgcaaaaaaaaatttcagcc
aattaaaagcacagtgtgcttatacttactatgtttgctacatcgtctag
gctaaaaaaagtgcaaaaagacatgaacgccattttttaatgagtgatgt
tatgagttttttgattgcggccgcatacaggaactcgccaaatgctccta
aCTGTTAGCGTTCTATTTGTTCTTGTACATCTATAATATTGTATGACCTT
TCTAGCTTTGAAACACATTTCGTGGAAGTAGACAgtgatgattttgaata
atattaaagatatgtttactttgtaatttcataactctctttgtcgattc
ttttggtcagttttccaggtattgaggtttaatgtttattcaatgctgta
gttttttagtctggaaatattgatatcacgttatactttacgaaaaacgc
gaaaaacgtaTATAAAGAGTAGttttttaacatagaatctgacagggtag
gtttttcagggtAGAATCTGATAGGGTATAGGTTTTTCAtagtagaatct
gacagggtaggtttttcatcgaatttttcttctgacagggtctatttttc
atcaaatttcatttctgatAGGATCAacttttgaaactccagcggcacgt
ccccgttggttgtcaaggtcagtgcccccccccgggattttaGTACTCCC
CTTTGAAACCAGATATATTTCAAGGTATCTTTTAACTTTTCTCTGTGGCA
GCAAGTATATTTGTCTAGGATGATTCTTTATATACATGTACAttgttttt
ttcaggttttggaGCCTTTGGCGAGTATAAAACAAACCCAAGTTGGCTGG
CTGTCCAGgtttgttttatctggttttatttgtataagaaaaagtatttt
actgatttgttataattttttaaactgTTATTTGCTTTACCCCAAAAAAT
TCTTTCCACTACCCAAATGCCTCCTTGAATAAACGTCCCCTCGAATAAAT
GCCTTCCTTTGAGGAAAGATTTGTATTTGTACTCAAATATAATAAAGAAA
AGGCAAAAGTAAGGTACCATTTCACACTAATAAAATGAACTCAGTTTTAA
ACTATTTAATAAATgctcccttcttttaaacgcccctcctaaaaatcaaa
atattcaatactGTATGTCCCCTTGTTATCTGAAATACCCAAACCTATTT
GCACCATGCTTTAGTTAGATCATCATTAAAGTTACCAAGGTTAAACAGAT
CAAAGCATTAGTATTTTTCTATCATTTAATTCATTTCAAACTTTCCCCTA
ATTGTAAATTGTCTTCACAATTTCTTTAGGAAGTTTCAAAGATCTGGCCT
AACAAAGGAGAGATACACATTAAAGAAATTCCAGTAGAATATAAATATGT
AGAAGAAAATgtaccaaaatatttggaagATATAAAGCCAAAGGtatatg
atttattatttttattttatattataagaTTACAGACTATTAATAAGTAA
TAAAGCTTCTATTAAGTAATTTATTATATTTAAGCTCTTTATTCATTCAT
AATATGATTTTATATAGATTTCAGTCAATGTTGGTGTATCAGGCCTTGCA
GAAGATAAACTTCAATTGGAATATTGTGCCCACTCGTCAGATTATGTGAA
GCCAGATATCGATGGATGTATTGGCCCAGATTGTTCGAAGGATGGTGAGT
CCTCTTTTTCGTTATCATGATCTATAAAATCATTACCGTGTTAAAATGTT
TTAATGTCTAATAACTACagcaattattttgaaaagaacTGTATATCTAA
TTCcagttggcaaaaagaaaaaatatttgcaaatCTTGGGTCGGCGGCTG
CTTCTGTGAAACATACACATTGTTTTGCTCTTATAACCTTATAGAAGCAT
ATTATCTAGATTCAATGGAAAGCGCCTCGAAGATGGCTCCATCTCGTTTA
CAAGTGACGCAATCTTAACTATATATAATCCGAGCAAAGAGAACAAAATT
ACTTTCTTTTAGTGTGTTTGACTACAAAGTTCGATCTTAAAAAATTGATT
GCTTGTTGTACTGGCAGTGCTTTACCAGTAGAAAGATCAGACAACGCGGG
AAGGTGAGTtgattttataatattttcttttactaGTAAGCATTTATTCT
TTTAAACATAAAACGGCTTTTTTCAAGCGTATACTTCCCAGCTGTCGTCT
ACCTTTAAATGTGTTAAcgtttatttcaaaattgtattttgaaaatgaac
ctAAAGTCtatctcaatataatttgcagcggagacaaaaaaagctgtaac
ttttgatagaattcaaatTAGAAAACGGTTTTATGCTCGTTTAAAAGATA
ATCCAAGAGGACtattatcaacaaaaaaaaaatttaaaaatggaaaaatg
aagatgaataatgaagaataagaaaatcaacttcttatAGAAAATGCtct
gatcttcatttttatatcagagattcttcaatcttagaacgtcataaatg
gggaaaaaattcaaaaaatatttattcagtcaaaaaatacagcttaaagc
tttgccctggttgacttaaaaatgggctcttttttgttgtgttttggtgg
tttttgAAGCCATTTAGTGAGAAGCTTTGGACTATATCTTtcgattgaaa
aaagttttttgaaagattttttcacattgatgatattgatgttctaagat
caaagaatcttacgtgtgaaaatgatgattatagcacaattattgaagaa
gttgattttcttcttcattttcaatcatcatttttcgattttttttgaat
ttttgttgttgataatattccactcatgtttgtcttttcaacaagcacaa
caCCTAAttctatctaattcgaattctatcaaaagttacagccttttttg
tctccgctgcaaattatattgagacagactttagacaCTTTATTTCGATC
AAGCCACTTCCCTAAAAAACTTCAAGCTGATGAGAACTATAAAGTTCGTA
CATACTGAGGAGGTGTAAATCCTTAATGGTTCAACATATACAAAGTAAAT
CGATTTTCAGGTATTTATGTGAATTCATTTACTACACATCAATGAAGACG
GACGAATGTCCATCGCTATTTGTTCACGTTCCTGTCATCACTGAAGAAAT
TACATTGGAGAAAATTACAAAGACTTTAGAAAGTATTATAAAGGCGTGCA
TACAACAGGTGTAG

Coding sequence (CDS) from alignment at sc0000649_pilon:3624..8387+

>XLOC_041569 ID=XLOC_041569|Name=XLOC_041569|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1364bp|location=Sequence derived from alignment at sc0000649_pilon:3624..8387+ (Clytia hemisphaerica_ch_hm2_pilon)
gtagacTTGCTACCTACCTTCCTAGGTCAGACATTTCGTCTGGAGCTTTT
CGCCAGACGGTACGGTGTTCAAAATTTCGATTGAACAAAATATGGAGAAA
GAAGCTGCAACCACAAACTTGTCACCCAGTATTTTCTTGACAGgtagacT
TGCTACCTACCTTCCTAGGTCAGACATTTCGTCTGGAGCTTTTCGCCAGA
CGGTACGGTGTTCAAAATTTCGATTGAACAAAATATGGAGAAAGAAGCTG
CAACCACAAACTTGTCACCCAGTATTTTCTTGACAGgttttggaGCCTTT
GGCGAGTATAAAACAAACCCAAGTTGGCTGGCTGTCCAGgttttggaGCC
TTTGGCGAGTATAAAACAAACCCAAGTTGGCTGGCTGTCCAGGAAGTTTC
AAAGATCTGGCCTAACAAAGGAGAGATACACATTAAAGAAATTCCAGTAG
AATATAAATATGTAGAAGAAAATgtaccaaaatatttggaagATATAAAG
CCAAAGGAAGTTTCAAAGATCTGGCCTAACAAAGGAGAGATACACATTAA
AGAAATTCCAGTAGAATATAAATATGTAGAAGAAAATgtaccaaaatatt
tggaagATATAAAGCCAAAGATTTCAGTCAATGTTGGTGTATCAGGCCTT
GCAGAAGATAAACTTCAATTGGAATATTGTGCCCACTCGTCAGATTATGT
GAAGCCAGATATCGATGGATGTATTGGCCCAGATTGTTCGAAGGATGATT
TCAGTCAATGTTGGTGTATCAGGCCTTGCAGAAGATAAACTTCAATTGGA
ATATTGTGCCCACTCGTCAGATTATGTGAAGCCAGATATCGATGGATGTA
TTGGCCCAGATTGTTCGAAGGATGTGTGTTTGACTACAAAGTTCGATCTT
AAAAAATTGATTGCTTGTTGTACTGGCAGTGCTTTACCAGTAGAAAGATC
AGACAACGCGGGAAGTGTGTTTGACTACAAAGTTCGATCTTAAAAAATTG
ATTGCTTGTTGTACTGGCAGTGCTTTACCAGTAGAAAGATCAGACAACGC
GGGAAGGTATTTATGTGAATTCATTTACTACACATCAATGAAGACGGACG
AATGTCCATCGCTATTTGTTCACGTTCCTGTCATCACTGAAGAAATTACA
TTGGAGAAAATTACAAAGACTTTAGAAAGTATTATAAAGGCGTGCATACA
ACAGGTGTAGGTATTTATGTGAATTCATTTACTACACATCAATGAAGACG
GACGAATGTCCATCGCTATTTGTTCACGTTCCTGTCATCACTGAAGAAAT
TACATTGGAGAAAATTACAAAGACTTTAGAAAGTATTATAAAGGCGTGCA
TACAACAGGTGTAG

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_041569	XLOC_041569-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000649_pilon	genome	sc0000649_pilon:3624..8387 +

Properties


Property Name	Value
Aaloc	544-696:4612
Aaloc	454-540:3565
Aaloc	325-450:3118
Aaloc	211-324:2880
Aaloc	160-210:2358
Aaloc	85-156:71
Aaloc	82-84:67
Aaloc	13-78:1

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XLOC_041569 (mRNA) -