XLOC_041464 (mRNA) -

Overview
NameXLOC_041464
Unique NameXLOC_041464
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000090_pilon:1158899..1164902+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_041464 ID=XLOC_041464|Name=XLOC_041464|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6004bp|location=Sequence derived from alignment at sc0000090_pilon:1158899..1164902+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCGAGTAGAAGGTAAAAATGACCAATCGCATTTGTACACGGACACTAA ATCGCATCATTTAAACGGAGGTGAAAATAGAGGGAAAATCATGTTCCCTT ACAAGCAAAGACATCCAAGTGAAGAAGTTGGTGACCATAATATCAATCCG AGAGATATGACTTATCACCATACACCAAGGAGACACTGTaggttcaattt ttcatttttgtaattcctaattggaaatttgaacccaaatatttttttta tgattgaaacaataatttcatactattgaaaaaatcttgaagttTTATTT TGGATAAGTTTGGTAGCAATTTATAATGGTTTCCTGCTATTCTAtctatt tttgggaaaaaaataccCAACCAAAAAGTGAGAACAAGACTTGTTTTCTT CTTCCAAGGTCTGATTCATTATCattctatctttcttcttttctattTGA AGTATCTGACTCAAGACCAATAGGTGTGGATCCCGTAGCGTTCGATAAAC TTGCGCGAAAAGTTGATTGGCTTTACGAGGAAGTTCGTTATATTCGCCAT TCACTAGAAGCTTTGAGAGGTCAACAACATGCAACACCTTCCGGTATAGA CCGTCACCGTCCGCTCCGTGGCTACCCACCACCTTCTGCTACCGAATCAT GGGAACGGTCCCATCCTTTACCGagcttcaaagttgaaataccaAAACCA CCATCTAGCTACTACTCGTCTATCAGCCGAGAGTTACCTCGTAGTTTACC CCATCATGAGCCATCTATTTCCCTATCTTCATCTAGAAGCATCTTATCTC CTAGCAGGCTGCAACCCTATCCTGCACCGATGACTACCGCTACTTCTTCG GCTTCCACCAGTAAGGGACCGGTCTACTCCCCTCAGCATCTACCGCTACA GAAGCAATACAAACAGGAACGAGAACCAGTAGTTCAGTACGACCTTGACT CCCCTTCCTCTTGCCCAACCTCAAGAGGTAGCCAGAAGCCTCCCATATCA CCCGTCATTCCTCAGGATTTGACCATTCTTGAAGTCATTGAACTGTGGGA GAAAGGTTTGAACGATATCCCTCCTATCTTGGATTGGGAcgttgaagaaa aaattcaataccGATCCAAACTAGAGGATATTTTCAAAGTGTATTACACA TATCGTCATTTGTGTAGCTCAGATCTTCAACAGTTTGCATCAACATATAC AGACAGTAtctcaaaagaattgaaaagtgTTTCTTATCTTGTTTCAATTT GTCCTCCAGAAGCGAAAGAAGATTTCGAGGTCTTTTTACAGACCTCTAAA AGTAGCTCTGGATCGGAATCACAGGAAAAGGTATTCACGTTACCACGTAA AATTGCCGGCCGTAAAGTTTCTGCGCGAGACGTGATCCAGTTATGGGAAT ACGGGATGGGGGAAGTCCCTCCCATTAAATCCTGGACCAAAACCCAAAAA TTTAAGCAACAATCAAAGATTTCACGATGGAAGAAAattgttgatatttt caaatatcAATGTAATAGCGATATGAGACGTTTTGAAGAAATTTACGCGG ACGGTCACGGTTGTTTGCTTCCCGTCGCCGCAATTACGAACCGTTTTGAA ACGCTTTACGGAGATGAGTTGAACATTACGAGTAAATTGATGACGGTCCC TACACCGACTGAAACGTCAATCATCTCCAATATGTCGGCTGCCGTAACAA TTTCGGGTTATCAGCATCCCGGTATATCACGTAAACGGAACTTGACGGAC GATTCTGCGTCAGATGATGGTAATACGGAAGAACAATATCCCTCACAACA TCGACCGTATTATGAAAGTGGCTCCAAGACGCCACCTCCGCCGCTTTTGG TGCCAGTAGGAAGTCCTCCATTGAAACAAGTCAAAATAGAAGGTAAGCAA TTTCTTTTTCTTCGTTTAAGAATAATCATCAATTTTGGCCCTTGACTGTT CTCTTTAAGTGTCATACCAGGTTAATTATAGTAATGATATGAAATTCGCT TGAGGGTGGTTTCCTCGTAGCAAGCGAACGGACTTAAGTTTCAGAAAACT TAAAGAAGAAGCTGTGAAGAATTCGCCTAATtgcaaagaagaaaaattga gaacGCAAGCTCCGAAACTTTTAGTTATTTCTCAAAACTACCGTTATAAG GATTACAAAATAACTATGGTTTTAAAGCAACCATTGATGGTCTCGAAAAA AGGGTGGTTGATTTGCAATAAGAATAGGAACCCCCAGGGGAAAGtttttt tGTGAGTTAATGTTGGCGCCATTAACTTTCCCAGCTggaacacaacgttg tttcaacgttcatctaacgttatatggacgttgtgaacgttagatgaacg ttgaaacaacgttgtgtgccagctgggttgtttAACGAAATTTTATGACG GagatttttttatacaaaagaaATCATAAGGACCACACTCCTTTTACTTC CTGCCCTCAAAATATCGCGCTACACTCTAATTAGAAGATATCTAAATGAA GAAGTTTCATAAAATCTTAATCTTAGATAAGAAGGGCTTATCATTGAGAT CTGGAGATTAAAAAGCAACGAACAGTGTAAGAAGGTCCCATGCgcaattt tctatttcgcaaTCTTTTTCTTTGCCCACGTTGTATCGCCTTTGTGGTCT AGATGaaatatagcctggatatccgggctgtaaacttttttcatattttt ttcgatgtttCTGGTTTACTACCTAGTTTCCCGGCAATTTGCATttcatt accgagtttatgtatgtgtgtttttcagcgacggagacgataaggttcta atttgactagatcatgaccaactgaggacgacggtaaatcagcactttaa ccgtcctcgattttgcgggtcagaactacgggctattccaaatcgcttca gtcagtTTACCATCCTCAAAAGCGCAattacataaactcgctactatCAG AAGGCAGCGCATATGTACTCTGTCCATACAcaaatttcctattagcagat tcatataAGAAACTGACGAAAGACATGCAAAGACTACCTCATgctctgga cattttgaaaaaaagatatgATTATGTGTTTCGAtctttttcgtgacttt tgacATAAATTTGCTAATAGGGAATACGTGTATTGAAATATTGCGCTAAG CTAAGAATTGCATCGACCCTGGGTTTACAAGCATCTAAGGTAGGTACACC AAGCTGTAagcagaaacatcaaaatagaaaaatagttTACAActtggatc tccaggctagatGGAATACCCAGTCACTGCCCTTACAGTTTAATACTGAG GTTAACTATACCAGGATAaacacgacgacggacgaaaaatgtaataggct agtgaaaatacgaaacttgattggttgaaactctctagcctgttaaattt tcgttcgtcgtcgtgattttaccgatttacttaacttcactaaTATTGGG TAGtcattttgaaagtttcaatttcCATAGACGACGTTCACACTAAAGAA GACAGAGGTGTTGTCCAATCTAATGGTCATAACAATGCAACAACGCCCTC ACACGCGCAATCAACAAACTCTTCCACGTTGAATCGTACCTTGATGGGAC CGCCCTCGTTAGGGGCGGAAAAACAAGTAACGCCACACAATAACTCGACA ATCGCTGGCATCTTTGGGAATTCACAATCCCCTGAAAGCAGTATAGGTAT GCCACACCCctttcaatacacctttcccaagTTTATCGATTTTTTCGACC TCTCCAATTTGAAACGAGAACTTGATACTTTTGAAGCGTTTGGTGATACA AAGtcattctgaaaatttgagatcaaaagCTTTTTCTGTTCCTTTTTATG GCTGTTTTTATGGTCAAACCTCTCTTGaaagaaagatattttatcCTACC GGGCCTCGTTTCTttactttaaaattgaaatatctcaagaaccgGAAGAG CTTTAAacacaattctttttttgttgattttgtatttcGTAGTAGAATCT TTCTTAATTAAATGCAAGTAGAGCAGGGTTTTGGAATAgcgtttttcaaa aaagtcgaaatataagctcgggaaaggtgtattttgtTCCTCTTATATCA AAAGGTTTGAGATTTTAAAGTGCGTACGTTTAATGAAAATCCGGTTTAAG AGTCATCCCAGCATACTAGAcgactagatttaaaaaaaatgtagtgtatG TTGAGGAAAACATAAGAGATGTTATTATACAAACTTTTATGATGTTATCG TATAACACCCATATCACCTGTATTACTGTAACAACTTCAGAATATAAGGT CAGGTTTTGTTGCCATTATTATCGCAATTCGTTATTGCAGAAGATGCTCT CTCTCACATTCACTAGCAGTTTAAAACTATGAAAAAGCAGTTTAGATTTc cattagcctatttcataggattcgctTATCTGTTATATGCTATTTTCTAC TCAATTGAGGGGGGAAATGCATAAATTTGTGCagattaccttaagggaac tatttttttgcgggaactaatttttgcggttcgcagttcaagatttaata taaaaatttgcgggaacttaattttgtgGATTTCTCACTTGAATGAAAAT TAGAGCCGTACTGTGAATTATTCgacctttgttttttttgcatttgaaaa attttgcgggaacttaattttgcggtttgggcctaaatccgcaaaaactg caaaatttagttcccgcaaaaattagttcccttaaggtatttccCTTCGA GAATAACGCTGACAAgatatcccagctggcacacaacgttgtttcaacgt tcatctaacgttatatggacgttgtgaacgttagatgaacgttgaaacaa cgttgtgtgccagctgggtatgtTTGTATTAATACCAAGTACTAAACACG AATCCTTGAAATAGGCTGAttgaaaaacacaaacacaCAAACTTGGTAAT AATTTCGACCAAGAAGTAGTTGAAAAACTAATgcgttaaggccggtctcc acttgcgcgcgctttgatcgtaatcttttttccaagcaaaaaggattgaa gcccaaAAGTGCGATcgtagcgcgcgcaagtggaaaccggcctttaCTTC TTAATAGTTGATAGATGATTCCATCAAAGAGTGCTCGATGATCGGGACCA GAGCTTCATACCGTGTACAAGAAAGAAACAAAGTTGAATTACGAtagtac tttaagtttcatcTTTATTGAATCGTCAGCTTTTCTTCTAATTCATTTTT TCCGTATTCCTTTTCAGCtgaaagtgatgacgtcacagaaGACTCTAACT CCGCAACAGTACCTCAACTTCGCCGAATGTCTTCCATCATATACATCTTA CCTGACACTATGACCATACGTGAAGCAATCACTTTCTGGGAGAAAGGCTC TAACGAATTCCCGCCCGTCCGCACTTGGACCAGACCTCAAAATTCTATTC AAACAGATTTAGTGATAAAGCTTGAACGGTTATACTCTATCTACACGGAA CGTTTCCATAGTGACATAGACGCGTTATTAGTGAGTGCCTTGGATGAGGA TAAACGAGAACTACCTATTGATAAGCTCATTTCGAAACATCAAGACGTGA AATTCAGTCAAACGCCTACAAATACCTCATCCATGACTTTCGATTTTTCA CATCACAAAACAATATCGCAAAGTAGCGAATCCTTGTATTTATTACCGCG TAAAATAAACGGTCGTAAAGTAAGCGCGAAAGATGTTTTACAATTATGGT ATCACGGATTAAATAAAATCCCACCTGTTAAATTATGGTCACCCCAACAA AAAGCTGTTCAACAGAGTAAAATTTCACGGTGGaaaaaaaTTGTGGAACT TTTTGAGCAGGAGTTTAACGGTGACTGGGAGATGTTTTACAAACATTTTT CGAACAGTCTTGGTCAACTGTTACCAATCACAGCCATTATTGCAAAACAT GAAGAAGAGACGCGATCGATGACTGAAAGTGCTATTTTACAACAGTTgaa ataa

Coding sequence (CDS) from alignment at sc0000090_pilon:1158899..1164902+

>XLOC_041464 ID=XLOC_041464|Name=XLOC_041464|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5160bp|location=Sequence derived from alignment at sc0000090_pilon:1158899..1164902+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCGAGTAGAAGGTAAAAATGACCAATCGCATTTGTACACGGACACTAA
ATCGCATCATTTAAACGGAGGTGAAAATAGAGGGAAAATCATGTTCCCTT
ACAAGCAAAGACATCCAAGTGAAGAAGTTGGTGACCATAATATCAATCCG
AGAGATATGACTTATCACCATACACCAAGGAGACACTATGCGAGTAGAAG
GTAAAAATGACCAATCGCATTTGTACACGGACACTAAATCGCATCATTTA
AACGGAGGTGAAAATAGAGGGAAAATCATGTTCCCTTACAAGCAAAGACA
TCCAAGTGAAGAAGTTGGTGACCATAATATCAATCCGAGAGATATGACTT
ATCACCATACACCAAGGAGACACTTATCTGACTCAAGACCAATAGGTGTG
GATCCCGTAGCGTTCGATAAACTTGCGCGAAAAGTTGATTGGCTTTACGA
GGAAGTTCGTTATATTCGCCATTCACTAGAAGCTTTGAGAGGTCAACAAC
ATGCAACACCTTCCGGTATAGACCGTCACCGTCCGCTCCGTGGCTACCCA
CCACCTTCTGCTACCGAATCATGGGAACGGTCCCATCCTTTACCGagctt
caaagttgaaataccaAAACCACCATCTAGCTACTACTCGTCTATCAGCC
GAGAGTTACCTCGTAGTTTACCCCATCATGAGCCATCTATTTCCCTATCT
TCATCTAGAAGCATCTTATCTCCTAGCAGGCTGCAACCCTATCCTGCACC
GATGACTACCGCTACTTCTTCGGCTTCCACCAGTAAGGGACCGGTCTACT
CCCCTCAGCATCTACCGCTACAGAAGCAATACAAACAGGAACGAGAACCA
GTAGTTCAGTACGACCTTGACTCCCCTTCCTCTTGCCCAACCTCAAGAGG
TAGCCAGAAGCCTCCCATATCACCCGTCATTCCTCAGGATTTGACCATTC
TTGAAGTCATTGAACTGTGGGAGAAAGGTTTGAACGATATCCCTCCTATC
TTGGATTGGGAcgttgaagaaaaaattcaataccGATCCAAACTAGAGGA
TATTTTCAAAGTGTATTACACATATCGTCATTTGTGTAGCTCAGATCTTC
AACAGTTTGCATCAACATATACAGACAGTAtctcaaaagaattgaaaagt
gTTTCTTATCTTGTTTCAATTTGTCCTCCAGAAGCGAAAGAAGATTTCGA
GGTCTTTTTACAGACCTCTAAAAGTAGCTCTGGATCGGAATCACAGGAAA
AGGTATTCACGTTACCACGTAAAATTGCCGGCCGTAAAGTTTCTGCGCGA
GACGTGATCCAGTTATGGGAATACGGGATGGGGGAAGTCCCTCCCATTAA
ATCCTGGACCAAAACCCAAAAATTTAAGCAACAATCAAAGATTTCACGAT
GGAAGAAAattgttgatattttcaaatatcAATGTAATAGCGATATGAGA
CGTTTTGAAGAAATTTACGCGGACGGTCACGGTTGTTTGCTTCCCGTCGC
CGCAATTACGAACCGTTTTGAAACGCTTTACGGAGATGAGTTGAACATTA
CGAGTAAATTGATGACGGTCCCTACACCGACTGAAACGTCAATCATCTCC
AATATGTCGGCTGCCGTAACAATTTCGGGTTATCAGCATCCCGGTATATC
ACGTAAACGGAACTTGACGGACGATTCTGCGTCAGATGATGGTAATACGG
AAGAACAATATCCCTCACAACATCGACCGTATTATGAAAGTGGCTCCAAG
ACGCCACCTCCGCCGCTTTTGGTGCCAGTAGGAAGTCCTCCATTGAAACA
AGTCAAAATAGAAGTATCTGACTCAAGACCAATAGGTGTGGATCCCGTAG
CGTTCGATAAACTTGCGCGAAAAGTTGATTGGCTTTACGAGGAAGTTCGT
TATATTCGCCATTCACTAGAAGCTTTGAGAGGTCAACAACATGCAACACC
TTCCGGTATAGACCGTCACCGTCCGCTCCGTGGCTACCCACCACCTTCTG
CTACCGAATCATGGGAACGGTCCCATCCTTTACCGagcttcaaagttgaa
ataccaAAACCACCATCTAGCTACTACTCGTCTATCAGCCGAGAGTTACC
TCGTAGTTTACCCCATCATGAGCCATCTATTTCCCTATCTTCATCTAGAA
GCATCTTATCTCCTAGCAGGCTGCAACCCTATCCTGCACCGATGACTACC
GCTACTTCTTCGGCTTCCACCAGTAAGGGACCGGTCTACTCCCCTCAGCA
TCTACCGCTACAGAAGCAATACAAACAGGAACGAGAACCAGTAGTTCAGT
ACGACCTTGACTCCCCTTCCTCTTGCCCAACCTCAAGAGGTAGCCAGAAG
CCTCCCATATCACCCGTCATTCCTCAGGATTTGACCATTCTTGAAGTCAT
TGAACTGTGGGAGAAAGGTTTGAACGATATCCCTCCTATCTTGGATTGGG
AcgttgaagaaaaaattcaataccGATCCAAACTAGAGGATATTTTCAAA
GTGTATTACACATATCGTCATTTGTGTAGCTCAGATCTTCAACAGTTTGC
ATCAACATATACAGACAGTAtctcaaaagaattgaaaagtgTTTCTTATC
TTGTTTCAATTTGTCCTCCAGAAGCGAAAGAAGATTTCGAGGTCTTTTTA
CAGACCTCTAAAAGTAGCTCTGGATCGGAATCACAGGAAAAGGTATTCAC
GTTACCACGTAAAATTGCCGGCCGTAAAGTTTCTGCGCGAGACGTGATCC
AGTTATGGGAATACGGGATGGGGGAAGTCCCTCCCATTAAATCCTGGACC
AAAACCCAAAAATTTAAGCAACAATCAAAGATTTCACGATGGAAGAAAat
tgttgatattttcaaatatcAATGTAATAGCGATATGAGACGTTTTGAAG
AAATTTACGCGGACGGTCACGGTTGTTTGCTTCCCGTCGCCGCAATTACG
AACCGTTTTGAAACGCTTTACGGAGATGAGTTGAACATTACGAGTAAATT
GATGACGGTCCCTACACCGACTGAAACGTCAATCATCTCCAATATGTCGG
CTGCCGTAACAATTTCGGGTTATCAGCATCCCGGTATATCACGTAAACGG
AACTTGACGGACGATTCTGCGTCAGATGATGGTAATACGGAAGAACAATA
TCCCTCACAACATCGACCGTATTATGAAAGTGGCTCCAAGACGCCACCTC
CGCCGCTTTTGGTGCCAGTAGGAAGTCCTCCATTGAAACAAGTCAAAATA
GAAGACGACGTTCACACTAAAGAAGACAGAGGTGTTGTCCAATCTAATGG
TCATAACAATGCAACAACGCCCTCACACGCGCAATCAACAAACTCTTCCA
CGTTGAATCGTACCTTGATGGGACCGCCCTCGTTAGGGGCGGAAAAACAA
GTAACGCCACACAATAACTCGACAATCGCTGGCATCTTTGGGAATTCACA
ATCCCCTGAAAGCAGTATAGACGACGTTCACACTAAAGAAGACAGAGGTG
TTGTCCAATCTAATGGTCATAACAATGCAACAACGCCCTCACACGCGCAA
TCAACAAACTCTTCCACGTTGAATCGTACCTTGATGGGACCGCCCTCGTT
AGGGGCGGAAAAACAAGTAACGCCACACAATAACTCGACAATCGCTGGCA
TCTTTGGGAATTCACAATCCCCTGAAAGCAGTATAGCtgaaagtgatgac
gtcacagaaGACTCTAACTCCGCAACAGTACCTCAACTTCGCCGAATGTC
TTCCATCATATACATCTTACCTGACACTATGACCATACGTGAAGCAATCA
CTTTCTGGGAGAAAGGCTCTAACGAATTCCCGCCCGTCCGCACTTGGACC
AGACCTCAAAATTCTATTCAAACAGATTTAGTGATAAAGCTTGAACGGTT
ATACTCTATCTACACGGAACGTTTCCATAGTGACATAGACGCGTTATTAG
TGAGTGCCTTGGATGAGGATAAACGAGAACTACCTATTGATAAGCTCATT
TCGAAACATCAAGACGTGAAATTCAGTCAAACGCCTACAAATACCTCATC
CATGACTTTCGATTTTTCACATCACAAAACAATATCGCAAAGTAGCGAAT
CCTTGTATTTATTACCGCGTAAAATAAACGGTCGTAAAGTAAGCGCGAAA
GATGTTTTACAATTATGGTATCACGGATTAAATAAAATCCCACCTGTTAA
ATTATGGTCACCCCAACAAAAAGCTGTTCAACAGAGTAAAATTTCACGGT
GGaaaaaaaTTGTGGAACTTTTTGAGCAGGAGTTTAACGGTGACTGGGAG
ATGTTTTACAAACATTTTTCGAACAGTCTTGGTCAACTGTTACCAATCAC
AGCCATTATTGCAAAACATGAAGAAGAGACGCGATCGATGACTGAAAGTG
CTATTTTACAACAGTTgaaataaCtgaaagtgatgacgtcacagaaGACT
CTAACTCCGCAACAGTACCTCAACTTCGCCGAATGTCTTCCATCATATAC
ATCTTACCTGACACTATGACCATACGTGAAGCAATCACTTTCTGGGAGAA
AGGCTCTAACGAATTCCCGCCCGTCCGCACTTGGACCAGACCTCAAAATT
CTATTCAAACAGATTTAGTGATAAAGCTTGAACGGTTATACTCTATCTAC
ACGGAACGTTTCCATAGTGACATAGACGCGTTATTAGTGAGTGCCTTGGA
TGAGGATAAACGAGAACTACCTATTGATAAGCTCATTTCGAAACATCAAG
ACGTGAAATTCAGTCAAACGCCTACAAATACCTCATCCATGACTTTCGAT
TTTTCACATCACAAAACAATATCGCAAAGTAGCGAATCCTTGTATTTATT
ACCGCGTAAAATAAACGGTCGTAAAGTAAGCGCGAAAGATGTTTTACAAT
TATGGTATCACGGATTAAATAAAATCCCACCTGTTAAATTATGGTCACCC
CAACAAAAAGCTGTTCAACAGAGTAAAATTTCACGGTGGaaaaaaaTTGT
GGAACTTTTTGAGCAGGAGTTTAACGGTGACTGGGAGATGTTTTACAAAC
ATTTTTCGAACAGTCTTGGTCAACTGTTACCAATCACAGCCATTATTGCA
AAACATGAAGAAGAGACGCGATCGATGACTGAAAGTGCTATTTTACAACA
GTTgaaataa
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_041464XLOC_041464-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000090_pilongenomesc0000090_pilon:1158899..1164902 +
Properties
Property NameValue
Aaloc1846-2580:5270
Aaloc1630-1842:3483
Aaloc190-1626:455
Aaloc1-186:1