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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000090_pilon:1158899..1164902+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_041464 ID=XLOC_041464|Name=XLOC_041464|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6004bp|location=Sequence derived from alignment at sc0000090_pilon:1158899..1164902+ (Clytia hemisphaerica_ch_hm2_pilon) ATGCGAGTAGAAGGTAAAAATGACCAATCGCATTTGTACACGGACACTAA
ATCGCATCATTTAAACGGAGGTGAAAATAGAGGGAAAATCATGTTCCCTT
ACAAGCAAAGACATCCAAGTGAAGAAGTTGGTGACCATAATATCAATCCG
AGAGATATGACTTATCACCATACACCAAGGAGACACTGTaggttcaattt
ttcatttttgtaattcctaattggaaatttgaacccaaatatttttttta
tgattgaaacaataatttcatactattgaaaaaatcttgaagttTTATTT
TGGATAAGTTTGGTAGCAATTTATAATGGTTTCCTGCTATTCTAtctatt
tttgggaaaaaaataccCAACCAAAAAGTGAGAACAAGACTTGTTTTCTT
CTTCCAAGGTCTGATTCATTATCattctatctttcttcttttctattTGA
AGTATCTGACTCAAGACCAATAGGTGTGGATCCCGTAGCGTTCGATAAAC
TTGCGCGAAAAGTTGATTGGCTTTACGAGGAAGTTCGTTATATTCGCCAT
TCACTAGAAGCTTTGAGAGGTCAACAACATGCAACACCTTCCGGTATAGA
CCGTCACCGTCCGCTCCGTGGCTACCCACCACCTTCTGCTACCGAATCAT
GGGAACGGTCCCATCCTTTACCGagcttcaaagttgaaataccaAAACCA
CCATCTAGCTACTACTCGTCTATCAGCCGAGAGTTACCTCGTAGTTTACC
CCATCATGAGCCATCTATTTCCCTATCTTCATCTAGAAGCATCTTATCTC
CTAGCAGGCTGCAACCCTATCCTGCACCGATGACTACCGCTACTTCTTCG
GCTTCCACCAGTAAGGGACCGGTCTACTCCCCTCAGCATCTACCGCTACA
GAAGCAATACAAACAGGAACGAGAACCAGTAGTTCAGTACGACCTTGACT
CCCCTTCCTCTTGCCCAACCTCAAGAGGTAGCCAGAAGCCTCCCATATCA
CCCGTCATTCCTCAGGATTTGACCATTCTTGAAGTCATTGAACTGTGGGA
GAAAGGTTTGAACGATATCCCTCCTATCTTGGATTGGGAcgttgaagaaa
aaattcaataccGATCCAAACTAGAGGATATTTTCAAAGTGTATTACACA
TATCGTCATTTGTGTAGCTCAGATCTTCAACAGTTTGCATCAACATATAC
AGACAGTAtctcaaaagaattgaaaagtgTTTCTTATCTTGTTTCAATTT
GTCCTCCAGAAGCGAAAGAAGATTTCGAGGTCTTTTTACAGACCTCTAAA
AGTAGCTCTGGATCGGAATCACAGGAAAAGGTATTCACGTTACCACGTAA
AATTGCCGGCCGTAAAGTTTCTGCGCGAGACGTGATCCAGTTATGGGAAT
ACGGGATGGGGGAAGTCCCTCCCATTAAATCCTGGACCAAAACCCAAAAA
TTTAAGCAACAATCAAAGATTTCACGATGGAAGAAAattgttgatatttt
caaatatcAATGTAATAGCGATATGAGACGTTTTGAAGAAATTTACGCGG
ACGGTCACGGTTGTTTGCTTCCCGTCGCCGCAATTACGAACCGTTTTGAA
ACGCTTTACGGAGATGAGTTGAACATTACGAGTAAATTGATGACGGTCCC
TACACCGACTGAAACGTCAATCATCTCCAATATGTCGGCTGCCGTAACAA
TTTCGGGTTATCAGCATCCCGGTATATCACGTAAACGGAACTTGACGGAC
GATTCTGCGTCAGATGATGGTAATACGGAAGAACAATATCCCTCACAACA
TCGACCGTATTATGAAAGTGGCTCCAAGACGCCACCTCCGCCGCTTTTGG
TGCCAGTAGGAAGTCCTCCATTGAAACAAGTCAAAATAGAAGGTAAGCAA
TTTCTTTTTCTTCGTTTAAGAATAATCATCAATTTTGGCCCTTGACTGTT
CTCTTTAAGTGTCATACCAGGTTAATTATAGTAATGATATGAAATTCGCT
TGAGGGTGGTTTCCTCGTAGCAAGCGAACGGACTTAAGTTTCAGAAAACT
TAAAGAAGAAGCTGTGAAGAATTCGCCTAATtgcaaagaagaaaaattga
gaacGCAAGCTCCGAAACTTTTAGTTATTTCTCAAAACTACCGTTATAAG
GATTACAAAATAACTATGGTTTTAAAGCAACCATTGATGGTCTCGAAAAA
AGGGTGGTTGATTTGCAATAAGAATAGGAACCCCCAGGGGAAAGtttttt
tGTGAGTTAATGTTGGCGCCATTAACTTTCCCAGCTggaacacaacgttg
tttcaacgttcatctaacgttatatggacgttgtgaacgttagatgaacg
ttgaaacaacgttgtgtgccagctgggttgtttAACGAAATTTTATGACG
GagatttttttatacaaaagaaATCATAAGGACCACACTCCTTTTACTTC
CTGCCCTCAAAATATCGCGCTACACTCTAATTAGAAGATATCTAAATGAA
GAAGTTTCATAAAATCTTAATCTTAGATAAGAAGGGCTTATCATTGAGAT
CTGGAGATTAAAAAGCAACGAACAGTGTAAGAAGGTCCCATGCgcaattt
tctatttcgcaaTCTTTTTCTTTGCCCACGTTGTATCGCCTTTGTGGTCT
AGATGaaatatagcctggatatccgggctgtaaacttttttcatattttt
ttcgatgtttCTGGTTTACTACCTAGTTTCCCGGCAATTTGCATttcatt
accgagtttatgtatgtgtgtttttcagcgacggagacgataaggttcta
atttgactagatcatgaccaactgaggacgacggtaaatcagcactttaa
ccgtcctcgattttgcgggtcagaactacgggctattccaaatcgcttca
gtcagtTTACCATCCTCAAAAGCGCAattacataaactcgctactatCAG
AAGGCAGCGCATATGTACTCTGTCCATACAcaaatttcctattagcagat
tcatataAGAAACTGACGAAAGACATGCAAAGACTACCTCATgctctgga
cattttgaaaaaaagatatgATTATGTGTTTCGAtctttttcgtgacttt
tgacATAAATTTGCTAATAGGGAATACGTGTATTGAAATATTGCGCTAAG
CTAAGAATTGCATCGACCCTGGGTTTACAAGCATCTAAGGTAGGTACACC
AAGCTGTAagcagaaacatcaaaatagaaaaatagttTACAActtggatc
tccaggctagatGGAATACCCAGTCACTGCCCTTACAGTTTAATACTGAG
GTTAACTATACCAGGATAaacacgacgacggacgaaaaatgtaataggct
agtgaaaatacgaaacttgattggttgaaactctctagcctgttaaattt
tcgttcgtcgtcgtgattttaccgatttacttaacttcactaaTATTGGG
TAGtcattttgaaagtttcaatttcCATAGACGACGTTCACACTAAAGAA
GACAGAGGTGTTGTCCAATCTAATGGTCATAACAATGCAACAACGCCCTC
ACACGCGCAATCAACAAACTCTTCCACGTTGAATCGTACCTTGATGGGAC
CGCCCTCGTTAGGGGCGGAAAAACAAGTAACGCCACACAATAACTCGACA
ATCGCTGGCATCTTTGGGAATTCACAATCCCCTGAAAGCAGTATAGGTAT
GCCACACCCctttcaatacacctttcccaagTTTATCGATTTTTTCGACC
TCTCCAATTTGAAACGAGAACTTGATACTTTTGAAGCGTTTGGTGATACA
AAGtcattctgaaaatttgagatcaaaagCTTTTTCTGTTCCTTTTTATG
GCTGTTTTTATGGTCAAACCTCTCTTGaaagaaagatattttatcCTACC
GGGCCTCGTTTCTttactttaaaattgaaatatctcaagaaccgGAAGAG
CTTTAAacacaattctttttttgttgattttgtatttcGTAGTAGAATCT
TTCTTAATTAAATGCAAGTAGAGCAGGGTTTTGGAATAgcgtttttcaaa
aaagtcgaaatataagctcgggaaaggtgtattttgtTCCTCTTATATCA
AAAGGTTTGAGATTTTAAAGTGCGTACGTTTAATGAAAATCCGGTTTAAG
AGTCATCCCAGCATACTAGAcgactagatttaaaaaaaatgtagtgtatG
TTGAGGAAAACATAAGAGATGTTATTATACAAACTTTTATGATGTTATCG
TATAACACCCATATCACCTGTATTACTGTAACAACTTCAGAATATAAGGT
CAGGTTTTGTTGCCATTATTATCGCAATTCGTTATTGCAGAAGATGCTCT
CTCTCACATTCACTAGCAGTTTAAAACTATGAAAAAGCAGTTTAGATTTc
cattagcctatttcataggattcgctTATCTGTTATATGCTATTTTCTAC
TCAATTGAGGGGGGAAATGCATAAATTTGTGCagattaccttaagggaac
tatttttttgcgggaactaatttttgcggttcgcagttcaagatttaata
taaaaatttgcgggaacttaattttgtgGATTTCTCACTTGAATGAAAAT
TAGAGCCGTACTGTGAATTATTCgacctttgttttttttgcatttgaaaa
attttgcgggaacttaattttgcggtttgggcctaaatccgcaaaaactg
caaaatttagttcccgcaaaaattagttcccttaaggtatttccCTTCGA
GAATAACGCTGACAAgatatcccagctggcacacaacgttgtttcaacgt
tcatctaacgttatatggacgttgtgaacgttagatgaacgttgaaacaa
cgttgtgtgccagctgggtatgtTTGTATTAATACCAAGTACTAAACACG
AATCCTTGAAATAGGCTGAttgaaaaacacaaacacaCAAACTTGGTAAT
AATTTCGACCAAGAAGTAGTTGAAAAACTAATgcgttaaggccggtctcc
acttgcgcgcgctttgatcgtaatcttttttccaagcaaaaaggattgaa
gcccaaAAGTGCGATcgtagcgcgcgcaagtggaaaccggcctttaCTTC
TTAATAGTTGATAGATGATTCCATCAAAGAGTGCTCGATGATCGGGACCA
GAGCTTCATACCGTGTACAAGAAAGAAACAAAGTTGAATTACGAtagtac
tttaagtttcatcTTTATTGAATCGTCAGCTTTTCTTCTAATTCATTTTT
TCCGTATTCCTTTTCAGCtgaaagtgatgacgtcacagaaGACTCTAACT
CCGCAACAGTACCTCAACTTCGCCGAATGTCTTCCATCATATACATCTTA
CCTGACACTATGACCATACGTGAAGCAATCACTTTCTGGGAGAAAGGCTC
TAACGAATTCCCGCCCGTCCGCACTTGGACCAGACCTCAAAATTCTATTC
AAACAGATTTAGTGATAAAGCTTGAACGGTTATACTCTATCTACACGGAA
CGTTTCCATAGTGACATAGACGCGTTATTAGTGAGTGCCTTGGATGAGGA
TAAACGAGAACTACCTATTGATAAGCTCATTTCGAAACATCAAGACGTGA
AATTCAGTCAAACGCCTACAAATACCTCATCCATGACTTTCGATTTTTCA
CATCACAAAACAATATCGCAAAGTAGCGAATCCTTGTATTTATTACCGCG
TAAAATAAACGGTCGTAAAGTAAGCGCGAAAGATGTTTTACAATTATGGT
ATCACGGATTAAATAAAATCCCACCTGTTAAATTATGGTCACCCCAACAA
AAAGCTGTTCAACAGAGTAAAATTTCACGGTGGaaaaaaaTTGTGGAACT
TTTTGAGCAGGAGTTTAACGGTGACTGGGAGATGTTTTACAAACATTTTT
CGAACAGTCTTGGTCAACTGTTACCAATCACAGCCATTATTGCAAAACAT
GAAGAAGAGACGCGATCGATGACTGAAAGTGCTATTTTACAACAGTTgaa
ataa Coding sequence (CDS) from alignment at sc0000090_pilon:1158899..1164902+ >XLOC_041464 ID=XLOC_041464|Name=XLOC_041464|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5160bp|location=Sequence derived from alignment at sc0000090_pilon:1158899..1164902+ (Clytia hemisphaerica_ch_hm2_pilon) ATGCGAGTAGAAGGTAAAAATGACCAATCGCATTTGTACACGGACACTAA ATCGCATCATTTAAACGGAGGTGAAAATAGAGGGAAAATCATGTTCCCTT ACAAGCAAAGACATCCAAGTGAAGAAGTTGGTGACCATAATATCAATCCG AGAGATATGACTTATCACCATACACCAAGGAGACACTATGCGAGTAGAAG GTAAAAATGACCAATCGCATTTGTACACGGACACTAAATCGCATCATTTA AACGGAGGTGAAAATAGAGGGAAAATCATGTTCCCTTACAAGCAAAGACA TCCAAGTGAAGAAGTTGGTGACCATAATATCAATCCGAGAGATATGACTT ATCACCATACACCAAGGAGACACTTATCTGACTCAAGACCAATAGGTGTG GATCCCGTAGCGTTCGATAAACTTGCGCGAAAAGTTGATTGGCTTTACGA GGAAGTTCGTTATATTCGCCATTCACTAGAAGCTTTGAGAGGTCAACAAC ATGCAACACCTTCCGGTATAGACCGTCACCGTCCGCTCCGTGGCTACCCA CCACCTTCTGCTACCGAATCATGGGAACGGTCCCATCCTTTACCGagctt caaagttgaaataccaAAACCACCATCTAGCTACTACTCGTCTATCAGCC GAGAGTTACCTCGTAGTTTACCCCATCATGAGCCATCTATTTCCCTATCT TCATCTAGAAGCATCTTATCTCCTAGCAGGCTGCAACCCTATCCTGCACC GATGACTACCGCTACTTCTTCGGCTTCCACCAGTAAGGGACCGGTCTACT CCCCTCAGCATCTACCGCTACAGAAGCAATACAAACAGGAACGAGAACCA GTAGTTCAGTACGACCTTGACTCCCCTTCCTCTTGCCCAACCTCAAGAGG TAGCCAGAAGCCTCCCATATCACCCGTCATTCCTCAGGATTTGACCATTC TTGAAGTCATTGAACTGTGGGAGAAAGGTTTGAACGATATCCCTCCTATC TTGGATTGGGAcgttgaagaaaaaattcaataccGATCCAAACTAGAGGA TATTTTCAAAGTGTATTACACATATCGTCATTTGTGTAGCTCAGATCTTC AACAGTTTGCATCAACATATACAGACAGTAtctcaaaagaattgaaaagt gTTTCTTATCTTGTTTCAATTTGTCCTCCAGAAGCGAAAGAAGATTTCGA GGTCTTTTTACAGACCTCTAAAAGTAGCTCTGGATCGGAATCACAGGAAA AGGTATTCACGTTACCACGTAAAATTGCCGGCCGTAAAGTTTCTGCGCGA GACGTGATCCAGTTATGGGAATACGGGATGGGGGAAGTCCCTCCCATTAA ATCCTGGACCAAAACCCAAAAATTTAAGCAACAATCAAAGATTTCACGAT GGAAGAAAattgttgatattttcaaatatcAATGTAATAGCGATATGAGA CGTTTTGAAGAAATTTACGCGGACGGTCACGGTTGTTTGCTTCCCGTCGC CGCAATTACGAACCGTTTTGAAACGCTTTACGGAGATGAGTTGAACATTA CGAGTAAATTGATGACGGTCCCTACACCGACTGAAACGTCAATCATCTCC AATATGTCGGCTGCCGTAACAATTTCGGGTTATCAGCATCCCGGTATATC ACGTAAACGGAACTTGACGGACGATTCTGCGTCAGATGATGGTAATACGG AAGAACAATATCCCTCACAACATCGACCGTATTATGAAAGTGGCTCCAAG ACGCCACCTCCGCCGCTTTTGGTGCCAGTAGGAAGTCCTCCATTGAAACA AGTCAAAATAGAAGTATCTGACTCAAGACCAATAGGTGTGGATCCCGTAG CGTTCGATAAACTTGCGCGAAAAGTTGATTGGCTTTACGAGGAAGTTCGT TATATTCGCCATTCACTAGAAGCTTTGAGAGGTCAACAACATGCAACACC TTCCGGTATAGACCGTCACCGTCCGCTCCGTGGCTACCCACCACCTTCTG CTACCGAATCATGGGAACGGTCCCATCCTTTACCGagcttcaaagttgaa ataccaAAACCACCATCTAGCTACTACTCGTCTATCAGCCGAGAGTTACC TCGTAGTTTACCCCATCATGAGCCATCTATTTCCCTATCTTCATCTAGAA GCATCTTATCTCCTAGCAGGCTGCAACCCTATCCTGCACCGATGACTACC GCTACTTCTTCGGCTTCCACCAGTAAGGGACCGGTCTACTCCCCTCAGCA TCTACCGCTACAGAAGCAATACAAACAGGAACGAGAACCAGTAGTTCAGT ACGACCTTGACTCCCCTTCCTCTTGCCCAACCTCAAGAGGTAGCCAGAAG CCTCCCATATCACCCGTCATTCCTCAGGATTTGACCATTCTTGAAGTCAT TGAACTGTGGGAGAAAGGTTTGAACGATATCCCTCCTATCTTGGATTGGG AcgttgaagaaaaaattcaataccGATCCAAACTAGAGGATATTTTCAAA GTGTATTACACATATCGTCATTTGTGTAGCTCAGATCTTCAACAGTTTGC ATCAACATATACAGACAGTAtctcaaaagaattgaaaagtgTTTCTTATC TTGTTTCAATTTGTCCTCCAGAAGCGAAAGAAGATTTCGAGGTCTTTTTA CAGACCTCTAAAAGTAGCTCTGGATCGGAATCACAGGAAAAGGTATTCAC GTTACCACGTAAAATTGCCGGCCGTAAAGTTTCTGCGCGAGACGTGATCC AGTTATGGGAATACGGGATGGGGGAAGTCCCTCCCATTAAATCCTGGACC AAAACCCAAAAATTTAAGCAACAATCAAAGATTTCACGATGGAAGAAAat tgttgatattttcaaatatcAATGTAATAGCGATATGAGACGTTTTGAAG AAATTTACGCGGACGGTCACGGTTGTTTGCTTCCCGTCGCCGCAATTACG AACCGTTTTGAAACGCTTTACGGAGATGAGTTGAACATTACGAGTAAATT GATGACGGTCCCTACACCGACTGAAACGTCAATCATCTCCAATATGTCGG CTGCCGTAACAATTTCGGGTTATCAGCATCCCGGTATATCACGTAAACGG AACTTGACGGACGATTCTGCGTCAGATGATGGTAATACGGAAGAACAATA TCCCTCACAACATCGACCGTATTATGAAAGTGGCTCCAAGACGCCACCTC CGCCGCTTTTGGTGCCAGTAGGAAGTCCTCCATTGAAACAAGTCAAAATA GAAGACGACGTTCACACTAAAGAAGACAGAGGTGTTGTCCAATCTAATGG TCATAACAATGCAACAACGCCCTCACACGCGCAATCAACAAACTCTTCCA CGTTGAATCGTACCTTGATGGGACCGCCCTCGTTAGGGGCGGAAAAACAA GTAACGCCACACAATAACTCGACAATCGCTGGCATCTTTGGGAATTCACA ATCCCCTGAAAGCAGTATAGACGACGTTCACACTAAAGAAGACAGAGGTG TTGTCCAATCTAATGGTCATAACAATGCAACAACGCCCTCACACGCGCAA TCAACAAACTCTTCCACGTTGAATCGTACCTTGATGGGACCGCCCTCGTT AGGGGCGGAAAAACAAGTAACGCCACACAATAACTCGACAATCGCTGGCA TCTTTGGGAATTCACAATCCCCTGAAAGCAGTATAGCtgaaagtgatgac gtcacagaaGACTCTAACTCCGCAACAGTACCTCAACTTCGCCGAATGTC TTCCATCATATACATCTTACCTGACACTATGACCATACGTGAAGCAATCA CTTTCTGGGAGAAAGGCTCTAACGAATTCCCGCCCGTCCGCACTTGGACC AGACCTCAAAATTCTATTCAAACAGATTTAGTGATAAAGCTTGAACGGTT ATACTCTATCTACACGGAACGTTTCCATAGTGACATAGACGCGTTATTAG TGAGTGCCTTGGATGAGGATAAACGAGAACTACCTATTGATAAGCTCATT TCGAAACATCAAGACGTGAAATTCAGTCAAACGCCTACAAATACCTCATC CATGACTTTCGATTTTTCACATCACAAAACAATATCGCAAAGTAGCGAAT CCTTGTATTTATTACCGCGTAAAATAAACGGTCGTAAAGTAAGCGCGAAA GATGTTTTACAATTATGGTATCACGGATTAAATAAAATCCCACCTGTTAA ATTATGGTCACCCCAACAAAAAGCTGTTCAACAGAGTAAAATTTCACGGT GGaaaaaaaTTGTGGAACTTTTTGAGCAGGAGTTTAACGGTGACTGGGAG ATGTTTTACAAACATTTTTCGAACAGTCTTGGTCAACTGTTACCAATCAC AGCCATTATTGCAAAACATGAAGAAGAGACGCGATCGATGACTGAAAGTG CTATTTTACAACAGTTgaaataaCtgaaagtgatgacgtcacagaaGACT CTAACTCCGCAACAGTACCTCAACTTCGCCGAATGTCTTCCATCATATAC ATCTTACCTGACACTATGACCATACGTGAAGCAATCACTTTCTGGGAGAA AGGCTCTAACGAATTCCCGCCCGTCCGCACTTGGACCAGACCTCAAAATT CTATTCAAACAGATTTAGTGATAAAGCTTGAACGGTTATACTCTATCTAC ACGGAACGTTTCCATAGTGACATAGACGCGTTATTAGTGAGTGCCTTGGA TGAGGATAAACGAGAACTACCTATTGATAAGCTCATTTCGAAACATCAAG ACGTGAAATTCAGTCAAACGCCTACAAATACCTCATCCATGACTTTCGAT TTTTCACATCACAAAACAATATCGCAAAGTAGCGAATCCTTGTATTTATT ACCGCGTAAAATAAACGGTCGTAAAGTAAGCGCGAAAGATGTTTTACAAT TATGGTATCACGGATTAAATAAAATCCCACCTGTTAAATTATGGTCACCC CAACAAAAAGCTGTTCAACAGAGTAAAATTTCACGGTGGaaaaaaaTTGT GGAACTTTTTGAGCAGGAGTTTAACGGTGACTGGGAGATGTTTTACAAAC ATTTTTCGAACAGTCTTGGTCAACTGTTACCAATCACAGCCATTATTGCA AAACATGAAGAAGAGACGCGATCGATGACTGAAAGTGCTATTTTACAACA GTTgaaataa
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0000090_pilon | genome | sc0000090_pilon:1158899..1164902 + |
Properties
| Property Name | Value |
| Aaloc | 1846-2580:5270 |
| Aaloc | 1630-1842:3483 |
| Aaloc | 190-1626:455 |
| Aaloc | 1-186:1 |
|