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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000186_pilon:619874..626856+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_041317 ID=XLOC_041317|Name=XLOC_041317|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6983bp|location=Sequence derived from alignment at sc0000186_pilon:619874..626856+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCCACAAAAGTCTATTTCGTAAGTTGTGGTTATATTCTGTTTTTTATG
ATTCTTTACTATATGAGTTGATGTAACtatattcattttatttattcatt
tcattttatatattttggtttgttattttcCATCTCATATGTACAtatga
ttttattgaaattgttttgaatttatcaTCTTTTCCAGATCTTTCTTCAC
aaagaaaaaacctgaaccaaagaacaaagaagatgagaaaaagtgaGTAA
CACTAAACATCCCATCTAAACAAACATAACAATATTTAGCTAGACTGCAA
ATTAGTTAAATCGTAAACacaaaaatttaagtttttaaacCAGCGCGTTT
TCAATATGTTTTAGGTATAGCTTGCTTTGCTCTGATGGTTTTCAGAAGTG
ATAGAATGATCCTGAACAAAAATCTCCCAAGAAagacatttcaaaatttg
tcataCTACAGACATAATTCTACGCAGCCTACCTTTTCAAGGTAGGTTTG
CAAAAGCTTGTTTTGATATTGATAGGATTAGGATCAAGCCTGATAGAATG
CTGCCAAACTCCAGCAGAATGGTGGACCACTTCCAATACTAagcttttta
ttcatttatcaTGAGAATCTCCACTCTTACGTTATCTTTTGAAGGAAACA
AACAATAACTGATGGAGACTCTCCAATAAAATCAAAccgaaaaaataaca
aaaagcgCATCCTTGATGAAAGCAGTGATGAGGAAACTCCTCCGgtccaa
aataaagaaaatggtttgaataataataataatgaaacAAAAGACTCCAT
ACAACCAAAAGACAGTGGAAACCAGGATCCACCTCCTAAGCGTAAAACTG
GTAAGTTgagattttttcttgttttgggttgtgtcttattcaggggtttt
tgatttgttttgtttctgaTAGACTAGCAAATGAAAAACTCTGGTGAATT
CTAGATTTTAGGCTGGCAAATTCCTAGTAAGCAAAGTGTATTGATTCGCC
TACGTTTGTACTTGAGGTGGCGAACAAATTATTTAGACCAGcaaattata
attttctttgtgTCTTGGACAGGCGATATTCAACCTAAGTAAGACCCTTG
TCTTATTTGAGTTTGATCAAACTAAGCCAACACTTGATCTCTAGATTGTT
GTAAAGAAGACTGATATAATCTAAAAGAAGACCTATgtcagtgtttttta
cacttttggcaaaaacgtgaaaactaattttcgtcaaaaacggttTTTTC
ATTCTAAAATCGCGATTCTTGAGTATTTTAGGATGAAAACTTCCAATAAG
TTGCGAATTATAATTTCAAAtctattgaaattttttcctcGAGCATTACT
TGatgagatattccaaaaaattagattttgtgtttttctcatttgaaatt
GTTATATACAAATTTCAAAGCTCTAAATATGATTTCCTTACACCTTCATC
GccctgaatttcgaaaaacacaAGCGAAGAGCACTTTTTTATTGCTTATT
CCGTCACAAAAGTCAGTTAAAGCTAAACATAAacttttaaggttttatca
aaTGATTTTGAGTCCTATAACATCTAAACTTGGTGGAAAGTCTGCTGAGT
CGTACAAGATTACCCTAGAAAGTTTTTAGAATGATATTCCAACCCTTACA
GAGTCAATAAGTATTTGAAATTCCATTTAACTTGGACTATATGGAAGCAA
AATTATTTAACCATATTGATTATCGaacaaagaaagaatttttagcATGA
ACTCATAATACATATCAAGATAAAGTTAACGAATTTTAACAATGAATACT
AATGAAATAATCTAAAGGAGCTGAGAAAGATTAATATTCCAACAAGAAAT
ATCAGTAAAACCTAACCATAGTAAACCTCTTTGAGCTTCTTCGGACTATT
CCCAGTTTGAAAAGCTTAGAAACATAATAAGTATCAAGAACTCGAATAAT
TGTAGAAGTAAGATATTTCTAGAGTTCAGAAGGATGAAATATTCCGTTTT
TAAAGGCTTACCTAGTTCTAATAATGCAAAGAAGTCGAAGTCTACCAGTC
ACCCATGTAACATTTCGAATtccaacaaaaatatatatattttctggcat
ttttcaaaagtttcatggAATAAATAATCTTTGCACGCTCTGAACTACAA
TACTTGCGATGAAAAGTTTCTTTGTCATAATATGAAACAAGTCTGTAAAA
AGGAGCACTTTTGAACGAGAAGCTCAGATTATGGATTATAACTTGACATG
AACGTAAAGATGCTTCTGGGTAatttatttcgtatttttttaaCACAAGA
ACTAGTTAGGAATATATCAATCTTAGAAGGCTCTCTATCACAAGTAACGC
TTTATCAAGTGATTATCTAACCTTCTCTTCGAAAGGATTtgatgaaaaca
ttcgaatgtagcAAGTCATTTAGGATGAATCATTCCATCCGTGACATGca
tgattttttgtaaatttggaaTATGTCATTCTATAGAGCTCCAAATGAAT
TTATATCTTACCCTACGGATAAAGCAGGCTTTTTACTATCAGGTGGTGTA
AAATTATTCTTTACAAAAAGATACTTCTGAAATCAAATGAGACCTTTTCT
ACCaaactaataaaaaaagagtacCATGATAAAAGGGGTTatgcaaaaag
tgaaatatggaATCCCTGCATGctccatttccaaaaaaatgttaactTTT
CAATTCTAGGGATGCTTGAGATTGAACAAATGCTTGCTTGAACATGATTT
CTCAAATACTAcccaataaaattttgaatgaagttAATGATTTATCCAAC
GAAGTGGAATAACTCCTCCAGAATTGCTCTAAATGGAATAATTCTTCCTT
TTATGGATTGCGAACGCTTAAAGGCTCCTGCCTGCCAAATTTTAGCCCAA
AAGCTTAAAAACTCAATGAGCTATTGCCGATGGAATATTTCTTCCTTTTC
CCAATGGAATAAATCGAAAGATCGTTACTTTTAGTACAATAACGCTATAT
AGTTCATTTAAAAAGGAATGGaatctttaatcttttctctctccaATAGA
ACTACTAAATTGATAATGAACGAAAACTTGCTCTCTaaaatttggtttta
aaaaagtgcccaaattttcacgtttttgccaaaagtgtaaaaaacactga
cCTATATCTATTTTTgaacctaccccggtggaggtcctataaattaacct
gtgtttgttcgtccaatttgggccaaaaaacggctaaaaaacgggttttt
tagactttgtgaaaaattgggtcattaaatttttctgattttttgtatga
aagtagggtaccatctaggtaaaagatggctcaagcagatttttgcaaaa
aaattttgttggctcaaaaaacgcatgtttatctataagaatcactatta
ataagcatacatcaatgttcttagtcaaattactcatttttttttatgag
atagatgtttttttgctcatgagggcttacttttagagagtatgtgtgtt
tagacatgaaattttggttgcttagcgtgttttctggaaaaactggccaa
atttgatatttttttataagcacattatcaattacttaggtattagcttt
tctcgagattggttctttcattctttatgattttttgcacaaagatgcat
aactttaaacccttaaatgtgacggagcccgattttcgaaaaaaaatgtt
tttgggcaaattttggccaagaaacggctaaaaaagggttttttggactt
tgtgaaacattggatcattgtttttttctgattttttacatgaaagtagg
taaaagatggctcaagcagatttttgtaaaaaaagaatttttcagctaag
aaacgcatctttatttataagaatcactattaataagcataaatcaatgt
tcttagccaaaTTttaattttaatgagaaagatggtttttttttgctcac
gaagtcttgaatatgaaagattatttcaagagcatgaaattttggtttct
aaacgttttttttataagaaacaaacgactaattttaatagatcgtcact
atttgttttctgaatgattgtttaacggttatgctcacgtagatatcaat
tatatttgttaaatgcataaccaggtaggtccataaaagtatcacttgtt
tcctTTCACTTTCAGCTCGTAAATCAGTGGTGGGTCCTAcaaaaaggaaa
cttaacaatgaagaaaaacaaaatgaaccagattcaaaagtattaaaaac
TGAGGCCAAGACAGAAAGTTCCAATGTTGAAATGGAAGGTTCATCTACTg
ctgaacaaaataaaaacaaagaaatcaaagaagaagcactttcaccagaa
aaggaggaagacaatcaagaaaagactcaagaaaatgttgAAGGGTCAAA
ATCTAGTGTCATTAAAGAAACTGCTAACACTACAGAAGACGTCAAAATGG
AAACAGATTCAGAGTCAAAACCGTCTGGAGAAGATCAAAATACAACAAAA
GATATTATCAAGGctaaaaacgaaaacaaaaatgaaaacaaagactctaa
gacagaaaaacaaaaaccagCAGAATCTGGATTTTTTGGTAACAACTATT
ATTACTATCAGACTTATTATTGATGAATGAATTATTTGATCCTGTATTAG
TTTATTcccaaaatcatcagaaaattctttccattttgtgttgtaaaaat
gactaaaagacTGAGTCTGAAATGAGTTTCAGAATGACAATTGATTTTTT
AGCTTCgaagaaaacaaacaaggttaagaaagagacagaggagaaagaaa
agcaactaacaaaaacagagaaggccgacaaaaagCCCAAAGGAATGGCT
TTCTTTACCAAAACATCCAAGGATGAGTaatattttacataatttttcGA
CTAAACTTTTACTATAATGCTGAACTAGATGTATAACTCAGATAATCCTT
TTGCATCCACACAACCGAATCACTTTAGCTGATGACTCTTTTGCATCTCT
TTGACACTTGCTGAGCTTAgctactttttcattcaatattcCCCAAGGAA
ATCAATGATAAGATTTTGGTAGCAGCCACTAGGAAAACCTTTTACTCGTG
TGATTTACCCTGAAAAGCATACACATAAGCCAGTTGAACTAAAACCGCTA
GACTATTTAAATTGAATTGTATTGCCAAGTTGCACATTTAACCAACTTAC
tagtcaatgtttttttttcctcaTTAGAAGCAAACCGTCAACTGCATCAG
TAAAACCTGTTGATTATAATCCAGCACAAGATAAATATCATCCAATCAAA
CATGCATGTTGGGGAAAAGATGAACCGTATTAACAATCAATCtctaattt
ttattgttttgatcttttcttttcttttacattCTCTAAAGATTTATAAT
TACAGTGATTGAAAAATTCTAATTGTTAACTGTTATAATATTGATGacca
aatctttttgaaaacctTCTTGGAAATTTACATTGAAATAAGTTAAATTA
GTAATAcaatacaaaatatttcaagcaaaatatTGTTTTACAATGTAAGT
GCAGATCAGATAAAACTAAAGTTTTAAATGGTTAGATTCGCTCTGTGCTA
AGCAAGAATGGTTTCATTATAATAATTGTATCAAAACTTCTTATTTAGAA
CTCCCTATATGGCTTTGTCTAAAACCTTTCAACATATTGAAGAAATATCA
GCAAGGTAAgtggaaaaagatttttataatcaaaagtttcaaatccATAA
TAAAAAGATAGCctaataacaataacaaacaataGTTTGTAATAAAGACA
TAATATTAGGAATagataatataaaaaattaatttgtgtaataaggtctT
ATAAGCTTTATATGACAAGTTatattttctaatattttcttttcatttca
ggTTAAAGATTCAATCCATCTTGTCAAATTTCTTCCGTTCAGTTATTGTG
CTTTCACCTAACGATTTGTTGATGTGTGTTTATCTGTGTTTAAATAAGGT
AAGAATTTGATAAAGAGTTCAAAGTAAGATCAttccttaaaaatggtttt
gaaatttgatttgaattttcatggtcttttttacaaaaatgtgaAGCTAA
CTgaataacagctgttcataattttctaatgcaaaaattaataaattgca
atgaaaattaaccatcgcaattgaaaattaaaccatCGGAAGAAAATAGT
CAATCTATAACAAGCATCTTGTTATGTGCCTTGATGTCAAAAATTCACCT
TTTTCCTGACAACTTCGAGCTATTAttgtcagattgtttgttttcatgcA
TCCCTTTAGAGCTGTAGCGTTgtgtgcagaaaacaatgaGAATCTGATCT
CAGGCTACCCTAAAGCCAGTTGGATAATTCGCCTGGATAGGTCTCTTGGT
CATAATTAAATTCAGTTATAAAATAAACCACATATTTGAATAATTATTAA
AACTTTATGTATTATTTCTACCAGAAAAATGTATTCTTTGCAAAGTTGAA
TGCATACAACATGgctcttttgtatttttcaaaaataaaactacaATTGG
TAATAGATTTCACAGGACTAAATGTTATTTAAAGCTTTTGACTTTATTTA
TTACTTCTAAccattatcttttcaacacagctaaaattgaaaaatttcaa
tgaggctggaagaagaaaagaaaaataaccaaCTTTTCAGGGTTAGAAAT
AGCGGTCGCCTGACCCAAATAGCTCCTTTTCTGACCCAAATAGCTccttg
tccgacccaaatagctcCTTGTCCGACCAGAAAATggtaattttcaagct
aaagcaaccctgattgGACATATTGTctgacccacttgaaatcgttattt
tgaGCCTTGACCtttttttACTCCAAATATCTGCATATATTCTTACTCCA
attatgtttcttttttctctcaGCTTGCACCAGCTTATGAGGGAATGGAA
CTTGGGATTGGTGAAAATGTTTTGATGAAAGCC Coding sequence (CDS) from alignment at sc0000186_pilon:619874..626856+ >XLOC_041317 ID=XLOC_041317|Name=XLOC_041317|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2280bp|location=Sequence derived from alignment at sc0000186_pilon:619874..626856+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCCACAAAAGTCTATTTCATGCCACAAAAGTCTATTTCATCTTTCTTC
ACaaagaaaaaacctgaaccaaagaacaaagaagatgagaaaaaATCTTT
CTTCACaaagaaaaaacctgaaccaaagaacaaagaagatgagaaaaaGA
AACAAACAATAACTGATGGAGACTCTCCAATAAAATCAAAccgaaaaaat
aacaaaaagcgCATCCTTGATGAAAGCAGTGATGAGGAAACTCCTCCGgt
ccaaaataaagaaaatggtttgaataataataataatgaaacAAAAGACT
CCATACAACCAAAAGACAGTGGAAACCAGGATCCACCTCCTAAGCGTAAA
ACTGGAAACAAACAATAACTGATGGAGACTCTCCAATAAAATCAAAccga
aaaaataacaaaaagcgCATCCTTGATGAAAGCAGTGATGAGGAAACTCC
TCCGgtccaaaataaagaaaatggtttgaataataataataatgaaacAA
AAGACTCCATACAACCAAAAGACAGTGGAAACCAGGATCCACCTCCTAAG
CGTAAAACTGCTCGTAAATCAGTGGTGGGTCCTAcaaaaaggaaacttaa
caatgaagaaaaacaaaatgaaccagattcaaaagtattaaaaacTGAGG
CCAAGACAGAAAGTTCCAATGTTGAAATGGAAGGTTCATCTACTgctgaa
caaaataaaaacaaagaaatcaaagaagaagcactttcaccagaaaagga
ggaagacaatcaagaaaagactcaagaaaatgttgAAGGGTCAAAATCTA
GTGTCATTAAAGAAACTGCTAACACTACAGAAGACGTCAAAATGGAAACA
GATTCAGAGTCAAAACCGTCTGGAGAAGATCAAAATACAACAAAAGATAT
TATCAAGGctaaaaacgaaaacaaaaatgaaaacaaagactctaagacag
aaaaacaaaaaccagCAGAATCTGGATTTTTTGCTCGTAAATCAGTGGTG
GGTCCTAcaaaaaggaaacttaacaatgaagaaaaacaaaatgaaccaga
ttcaaaagtattaaaaacTGAGGCCAAGACAGAAAGTTCCAATGTTGAAA
TGGAAGGTTCATCTACTgctgaacaaaataaaaacaaagaaatcaaagaa
gaagcactttcaccagaaaaggaggaagacaatcaagaaaagactcaaga
aaatgttgAAGGGTCAAAATCTAGTGTCATTAAAGAAACTGCTAACACTA
CAGAAGACGTCAAAATGGAAACAGATTCAGAGTCAAAACCGTCTGGAGAA
GATCAAAATACAACAAAAGATATTATCAAGGctaaaaacgaaaacaaaaa
tgaaaacaaagactctaagacagaaaaacaaaaaccagCAGAATCTGGAT
TTTTTGCTTCgaagaaaacaaacaaggttaagaaagagacagaggagaaa
gaaaagcaactaacaaaaacagagaaggccgacaaaaagCCCAAAGGAAT
GGCTTTCTTTACCAAAACATCCAAGGATGACTTCgaagaaaacaaacaag
gttaagaaagagacagaggagaaagaaaagcaactaacaaaaacagagaa
ggccgacaaaaagCCCAAAGGAATGGCTTTCTTTACCAAAACATCCAAGG
ATGAAAGCAAACCGTCAACTGCATCAGTAAAACCTGTTGATTATAATCCA
GCACAAGATAAATATCATCCAATCAAACATGCATGTTGGGGAAAAGATGA
ACCAAGCAAACCGTCAACTGCATCAGTAAAACCTGTTGATTATAATCCAG
CACAAGATAAATATCATCCAATCAAACATGCATGTTGGGGAAAAGATGAA
CCAACTCCCTATATGGCTTTGTCTAAAACCTTTCAACATATTGAAGAAAT
ATCAGCAAGAACTCCCTATATGGCTTTGTCTAAAACCTTTCAACATATTG
AAGAAATATCAGCAAGgTTAAAGATTCAATCCATCTTGTCAAATTTCTTC
CGTTCAGTTATTGTGCTTTCACCTAACGATTTGTTGATGTGTGTTTATCT
GTGTTTAAATAAGgTTAAAGATTCAATCCATCTTGTCAAATTTCTTCCGT
TCAGTTATTGTGCTTTCACCTAACGATTTGTTGATGTGTGTTTATCTGTG
TTTAAATAAGCTTGCACCAGCTTATGAGGGAATGGAACTTGGGATTGGTG
AAAATGTTTTGATGAAAGCCCTTGCACCAGCTTATGAGGGAATGGAACTT
GGGATTGGTGAAAATGTTTTGATGAAAGCC
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000186_pilon | genome | sc0000186_pilon:619874..626856 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1081-1140:6924 |
| Aaloc | 985-1080:5903 |
| Aaloc | 928-981:5650 |
| Aaloc | 829-924:5229 |
| Aaloc | 706-825:4755 |
| Aaloc | 283-702:4168 |
| Aaloc | 76-279:646 |
| Aaloc | 22-72:190 |
| Aaloc | 1-18:1 |
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