XLOC_041255 (mRNA) -

Overview
NameXLOC_041255
Unique NameXLOC_041255
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000382_pilon:138073..142359+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_041255 ID=XLOC_041255|Name=XLOC_041255|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4287bp|location=Sequence derived from alignment at sc0000382_pilon:138073..142359+ (Clytia hemisphaerica_ch_hm2_pilon)
AAAATGGTGGATCCTCatcaagaaaatttacaaagacTGTGTAGAATTTG
TGgggaaaatattcttaatgaTGGAGTTTTGGTGGATAGCAAATCCGAAG
ATATTTTGGAATGTTTCTACCTTAAAACTAGAAAAGATGAGGATCGTAAA
CATCCAAAATATATATGCCTCAAGTGCTGTGCCCAGCTGAATGCCATCAA
AAAGCGGGGTTCTACGGTAAAACATCAACTCATAAATTGGCCCTTGCACT
CTGATGATGGTTGTTGGGTTTGCTCAAGAGCTGATACTTCACGAAATAGT
CCAGGTCGACCAAAGAAGACCAAAAAGCAGGGTGGACGGCCATCAAAATC
GCCAGTTCCCACGATATGGACACGTAACAACATACTTGCTTTGATCCAGC
AGATTCCAGATTCTCTGAAAGAAACAGACAACAACGATATTCCTTTGACT
TCCTTTCTTCAAGATGACTTCACAGATTTGGTTAAGTGTCCAGTTTGTCA
AAAACTCTTTGATAAACCAGTTTTGGTATCATCATGTCAGCACGTAGTAT
GTTTGATGTGTCTACTGAGTCACATTGAAGGTCATGGACTTGAAAAATGC
AAATGTCCATGTCAATCATGTACTTCATTGGTCTCCCCATCAGGTGTCAT
ATTTTCTCAACAAACAATTGATATCATAAACAGATTAAAACCAGCCACAT
CAACTACTGAAATCAAACTGAAGGATGTATTCTCATTAACTACCAGTGAT
AAGGTTCCACGAGATTATGAAGAAGCTGCAGTACACATAATTAAAACCAA
ACTATCCCAATCATGTGACAAGTCAATATCATTCAACACTGATGGGTCAA
GGGTAAGCAATCTAAAAAAGAGAATGTGTTTGATAATTTAAGTTCTATTG
ATTGCAAAATTTTTGTCATGCCATGACATAAATGAGGACAAAATTTCAAG
CTTATTAAGataaagtcaaaaaatttattcaatgtGGATTGTTGTATAAT
ATagattattgttttctttttaagccTCTTGTTCTTGTATCAACCCGGTA
GCAATCAAGAAGAATGTTTGTCGTCGTGCAATCCAGTTTGGAAATGCAGC
AATTAAAACTTTACTGAGTCTTGTCAGCAATGGAGACAGCACAAATCAGA
CAGCACATTTTGTCAATTCGTTAACGTTATTTGAACAAAAAGAGATCATT
GGTAACAGAGTTTTTGATGCAAAAACAATTGTTGCTATGAAGGCTGATTT
AGAAATACCATAGGCAACACTGAGGAAATTAGCAAGGTTACAGAATTTCC
CAGTTTATTAGCATTATATATCAGTAACATTAAACAACCAGGATAGAAAT
CTGTCAGTTTACTTTAGCATATATACACATTATTTCAGTATCCCTGTTTT
TAAAGTCATGTTTAGAACATAGAGCAGATTACCCCATGGGTGCATAAAGG
TTTCAAAttgttgaattgaaaaattctggaaatattttctcaatttaaca
attaacttttctatcttttttgcttttatactGTAGGTGGATGAGGGAAA
GCAAAATAACATTTGAATCGGAACGCAAACAGAGAGAGATTATGCACACA
ATAGTAGCTGCTGTAGTGATTTGCAAGCTAGCCCCTTTCCAATTTCCAAA
AAGATGCAAGAAGACTGGGAATATTTTAAAAGGCAAATATGAACAATTGG
AAGCAGCATAGGCATACATTGATGACCTGAAAGGACACTTGTTTGCATAC
CTTGAATCTCTTGTAAGGTATGTACACCTTGGCTGTACAAAAATATCACT
TGTTTTACAAATACTAAAGTATAAAGattttagctaattctatttcaatt
taatttatattttttatttcccttttcTTCCATACAGTACATCATTATTC
GTCGAGAACCAACAATAAAAGACGAGCTTCACATAAAAATTGGAGGTGAC
CATGGTGGTGGTTCCTTCAAATTCTCCTACCAATGCTGCAATACTGATTG
TCCTAACAGCAGAAAGAATACAATCGTATTCAATACTTTTGAGGCGAAGG
ACTATCGTGTAAACATCAAATTATCAATGGATCGTTACAAAGATACAATA
GATGAAATCCAGAAAATGGAATGGAGGTGACTTACCAGATTTGTCTTTAT
TTGAGTGTATTGAAaccaaaatcatcatcatcatcagtaTGCTCATTCAA
CAcctaaataaaaacaagaattagatcattttgaattttatacgtgaaat
tttttttcgatcctaaattttcatatttttttaaacataatttATGGAAT
CACTGGAGCCAGTGGTAAGAAATTGTACCAACattaattttggtgaaaag
ttATTGTCGTttattttatgaatattttccctaaatgaaagaaatcagaa
ttttaaaggaaaaagcaAGTATCAATAAATGTTTAATCATTTAATATCCT
TTTTCAGGGCGTCAATGTTGTTTGTTTTGCAATGCAACTTactctgaaat
tcaaaaatgtccTGCAGATCAATCAAAATTAATTACAGAACGAACACTTG
AGACCTTGCGAACAAAATTAGAAGAATTTGAAGCGGCAGGTGGGATCATT
GGCAACGCAAAGAAATTTGACAATGTTATTCATGAACCCATTGTAAATAT
TCCACTTGATCAGGTATAGAATTCCAAATAATTCTATTTTCATTATAAGA
CTGATCTTTTCTAATTATTTTTTGTGGGACTGGACTTATTAGCGCAGGAA
CCGATCAACCAATGTTTATTGATAGAcgtattattttctttttttgtagg
TTGCCATTCCTGCACTCCACATCAGCCTTCGAACttatcttaaaattttc
aacatgCTTGAAGATGAGTGCAGACTGTTAGACATGGAGATCCTTGGAGA
CCTGGCAGAAAAAGACGAGAATACTGAAATCACACGTgaagatgttttga
aaaatgtggaAATCcttaagaaaatccaaaatcttGAATTTAACGCCCAA
GATTGTCATCACAAAATTTGTCTTGTCCAATAAGCAATTAGAGTAAATAT
TTGCAATAACCCTGATGAAGAAGAGAGGATTAGAACAATTTATAATGAAA
GAATAGACATGTTGAATGAAGTACTCTGTAAGAAGGTAATAAAAGCTATA
ATTATATtataacaaaacaatttttggggaattaatttttgcattttgca
cagttttattttccgaaaaaccttgaaatttgAACCAGTGAGATAAAATG
TtctgaaaattcttcaaaagccCTAGGGAAATGAAGTTGGTccgaaaaag
gtcaaaattgaaaagaattatttcctaggaaattcaattttctgattttc
ttttcaaccaCTAAAAAAGCCAGTTCCAAAAAGGTatattttaactttct
tttcagcTTGCAGAGATTGACGAGTTAGAGAATGAATTGACAATCAATGC
CAGTTGTGGTCCTTGCTACAGAAAACTTGACGAGGTTCTACAATCGTTCG
GTGTTCAAAGACAGGCATATCACGGAAGATCATTTATAGGAAACGATGTT
CATAAAATGTTGCACGTACGTATCAAAAGTCCAAGATACATTGATaaaaa
tccttttgaaaattttaaaaatgcgaaagaccgtaaaaatgctctttttt
catgaaatatacAATTTAGATATAATTACTGTGGAgcaatatcaaaaatt
ttgcttggaGCTAATTTCCATATCCTACCAAGTACCTAAAAAATTCATGA
TGTGAAGTAAgaccaaatttaatttaatccaCTTACAATGTTTAAAACTT
CTATctttcaggaaaaaaacattcgCAAGCTATGTCACAGCATTCCTAAA
CTAGTTTACGATGAATTTGGTTTGATCGACACCCCTGCCCACATACGTGC
ATGTGATATCAGCAAGAGATTTAAAGAATTGATGGATAATTATGGTGTTT
GTCATCGACTCATGAACTCATCTGATTAtttcaatgatgaaaaaattcAG
CAGCtaggtatgttttttttgtgataTCCAGTATGATTGTCTATTTTTGA
ATACCCGCTTTAAATTAAACATTCAAAATTCTGTCCGTACCAACCATAAT
GTCTCTTTGGTTGGTGATTTTAAAAAGGGGAATTAATATTGGAAATTTGT
ATAGTATAAGTTCCACTTACCAGGATCCTTGTCTTTTTCATCAGATACAG
CAATCAAAAAGTTCTTTGTGCACTACCGTGATAACTTTAAACAATCAATC
ACAATCAAACTTCATATGCtcgagtgtcacattctaa

Coding sequence (CDS) from alignment at sc0000382_pilon:138073..142359+

>XLOC_041255 ID=XLOC_041255|Name=XLOC_041255|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1956bp|location=Sequence derived from alignment at sc0000382_pilon:138073..142359+ (Clytia hemisphaerica_ch_hm2_pilon)
AAAATGGTGGATCCTCatcaagaaaatttacaaagacTGTGTAGAATTTG
TGgggaaaatattcttaatgaTGGAGTTTTGGTGGATAGCAAATCCGAAG
ATATTTTGGAATGTTTCTACCTTAAAACTAGAAAAGATGAGGATCGTAAA
CATCCAAAATATATATGCCTCAAGTGCTGTGCCCAGCTGAATGCCATCAA
AAAGCGGGGTTCTACGGTAAAACATCAACTCATAAATTGGCCCTTGCACT
CTGATGATGGTTGTTGGGTTTGCTCAAGAGCTGATACTTCACGAAATAGT
CCAGGTCGACCAAAGAAGACCAAAAAGCAGGGTGGACGGCCATCAAAATC
GCCAGTTCCCACGATATGGACACGTAACAACATACTTGCTTTGATCCAGC
AGATTCCAGATTCTCTGAAAGAAACAGACAACAACGATATTCCTTTGACT
TCCTTTCTTCAAGATGACTTCACAGATTTGGTTAAGTGTCCAGTTTGTCA
AAAACTCTTTGATAAACCAGTTTTGGTATCATCATGTCAGCACGTAGTAT
GTTTGATGTGTCTACTGAGTCACATTGAAGGTCATGGACTTGAAAAATGC
AAATGTCCATGTCAATCATGTACTTCATTGGTCTCCCCATCAGGTGTCAT
ATTTTCTCAACAAACAATTGATATCATAAACAGATTAAAACCAGCCACAT
CAACTACTGAAATCAAACTGAAGGATGTATTCTCATTAACTACCAGTGAT
AAGGTTCCACGAGATTATGAAGAAGCTGCAGTACACATAATTAAAACCAA
ACTATCCCAATCATGTGACAAGTCAATATCATTCAACACTGATGGGTCAA
GGGTAAGCAATCTAAAAATGGTGGATCCTCatcaagaaaatttacaaaga
cTGTGTAGAATTTGTGgggaaaatattcttaatgaTGGAGTTTTGGTGGA
TAGCAAATCCGAAGATATTTTGGAATGTTTCTACCTTAAAACTAGAAAAG
ATGAGGATCGTAAACATCCAAAATATATATGCCTCAAGTGCTGTGCCCAG
CTGAATGCCATCAAAAAGCGGGGTTCTACGGTAAAACATCAACTCATAAA
TTGGCCCTTGCACTCTGATGATGGTTGTTGGGTTTGCTCAAGAGCTGATA
CTTCACGAAATAGTCCAGGTCGACCAAAGAAGACCAAAAAGCAGGGTGGA
CGGCCATCAAAATCGCCAGTTCCCACGATATGGACACGTAACAACATACT
TGCTTTGATCCAGCAGATTCCAGATTCTCTGAAAGAAACAGACAACAACG
ATATTCCTTTGACTTCCTTTCTTCAAGATGACTTCACAGATTTGGTTAAG
TGTCCAGTTTGTCAAAAACTCTTTGATAAACCAGTTTTGGTATCATCATG
TCAGCACGTAGTATGTTTGATGTGTCTACTGAGTCACATTGAAGGTCATG
GACTTGAAAAATGCAAATGTCCATGTCAATCATGTACTTCATTGGTCTCC
CCATCAGGTGTCATATTTTCTCAACAAACAATTGATATCATAAACAGATT
AAAACCAGCCACATCAACTACTGAAATCAAACTGAAGGATGTATTCTCAT
TAACTACCAGTGATAAGGTTCCACGAGATTATGAAGAAGCTGCAGTACAC
ATAATTAAAACCAAACTATCCCAATCATGTGACAAGTCAATATCATTCAA
CACTGATGGGTCAAGGGTAAGCAATCTAGATCCTTGTCTTTTTCATCAGA
TACAGCAATCAAAAAGTTCTTTGTGCACTACCGTGATAACTTTAAACAAT
CAATCACAATCAAACTTCATATGCtcgagtgtcacattctaaGATCCTTG
TCTTTTTCATCAGATACAGCAATCAAAAAGTTCTTTGTGCACTACCGTGA
TAACTTTAAACAATCAATCACAATCAAACTTCATATGCtcgagtgtcaca
ttctaa
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_041255XLOC_041255-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000382_pilongenomesc0000382_pilon:138073..142359 +
Properties
Property NameValue
Aaloc865-978:4174
Aaloc1-864:1