XLOC_041238 (mRNA) -

Overview
NameXLOC_041238
Unique NameXLOC_041238
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000446_pilon:120222..124882+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_041238 ID=XLOC_041238|Name=XLOC_041238|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4661bp|location=Sequence derived from alignment at sc0000446_pilon:120222..124882+ (Clytia hemisphaerica_ch_hm2_pilon)
GATGTTGATGAAAGTGAATGGGACTCAACTTTGGTTGAAGCAATGAAGTA
AGTATTATATTTTACAATCACCATTTACATACATATACCACTGGCATTGC
ACTGCTGCACCTGTATACATCACACCTATATAACCACGTGTAACTAATGA
AAACGAAAAATAGATTACCGAAATCATAGAATTTAACAAATTCATCAAAT
TAATTGAGAAAAAGATTGGAAATTTCGATAAGTTTGATAAGCATTCAAAA
GCTTTGTTTTGATAATCGAAGACTAATCGAAACGATTACTCTCTGGTTAG
TTTTGATGAATTCGGTTAAAAAACGAATTTGGTTACCTTCGATTGGTTAC
GCCTGGATATAATCTTACACAATTTTACTTGACTTCTTGAGAGATACAAG
CATCATTGCATCATTCAAGACATCCATGGCATTCAGAAAGGTCCACCGTG
AGATCGGTTCAGGTAATTGGGTCAGTGGAAGCCCAGTTTTCAGATCATGC
AGCCATGGCTGCTCCCAAAGAGAAATTAGTccaattgaatatattttcgc
ttcaacacagcaggataaccccttgccttacaaaaaaaaaaagatttctc
taatacaatgaacctagaagaaactgaaaaattattacagaactaaagaa
aaaatgaataaacgattatcataatattaatagtgacacaaaataatgaa
tataagaaatatttttacttttattttatgaaaatttaatagctttgccc
ctggtgccagttttgtgatcaatttcatcaaaattaagtgttgataggac
atcagatagaagattaccctggaggtacttttgaataaataagatattca
ttactttcacctgatcaaagattttgagtaatttaagctcagcaaacagg
ggagtggcagaagttcttggttcactaaaggtcatgagtcttagtgcagt
gttttgaagagtaagaattctatgtgtgacagtattgtcacacagtcccc
agagttgactagcatagcgaacatgagaagcaaaaattgcatgataaatg
ttttgaaggatgtgaattggaacatagtgacgaagtttggatattgcccc
atttgcccttctcaatgtagcagcaacgaaagaagtatgaaccttccagt
ttagatgattgtcaaggtgaacacccaaatacttcacactcttacttggt
gatagaatttttttatttttgatttttttttcagtgatatCCCACTGAGA
ctagaaaattatcaaatttttactccTGCCCTTGAAAATGGACAAACTCT
GCCCCCCTCAACCCCAAGATCTTGATCATTTCTAGAACAATCTTTGGGAC
ACACATTGATTTATTTATTCCTACTTTGCATCCCCTACTAATCTTTTGCA
TAATTTCTGAGGTTTGCTCAATACTCCTATTCATTTTGTATATcaataaa
aattctaataattttaataaaatttgtatatatagtcatctggggtaatt
acgggacagtTAAAATTAAGGAGTAAATATGGGACACCCCTAAAAATGGT
GCTATTATTATAAATTTGGATTCAGATGGAGTGGATTTTGGAGATAGTCA
TTCTAGCTGCTAGAAAAATGTCTGGTTAGATTATTCTAACATATACTTTG
ATGATTCGACAAAAGTTTCACATGTCACCATAAATATAGATTTTCGAAGT
TTTATAAGGAACTTTTCAAGCTTTAGTGTCAGGAAGAACTGCAAtcactt
tgattatattttgactgaattctgACATCAAGATACTATGGTTTGAAATC
ATAATAGTCACATTATCAAACAAGGCACCTTATCTCTAAAAAGTGTGTCC
CATATTCACCCCGTAGTCAAATCTTAATCTTTGGGTTATTATGGGACACT
AAAGTTTGAGTTTGAAGTGTTTATTTTTACTTACTTTAATGAAATCATAA
CTACACTCTAAGTCTTTCAAAACCTGCAAAGGTTTGCATCTAAATATACT
TCAGTTGGTCTAGATTGCTCTATAGAAATATTATTGATTGAAGTGTCCCG
TTATTACCCCCAAATTGGAAAAAGGCTGGGGTAAAAATGGGACACTGTCa
ctaattttgttgaaagtccttTAGATGATAACACTTGGATTTGAAGTCAT
CAAGTGGATGCAAAACCTTAAATATCATAGccttttggaaagatatctgg
atttttcaataacattttatacctgtcccataattaccccgagggtgtcc
cgtaattacccaaAATGCGGAGTATTTATGGGACacttttagaataattt
ttaggagcatctactaaatttcaaggaaaagtaaTAAATCTTGTGTAAAG
GTCATAAAAAATCAGATCTCTAGGATTAATACTTTTAGTACACTCAAATA
TGTCAAAatcgtcccgtaattaccccagatcACTATATAATGACAATaac
atttaaattttaaattttagattttatatgTGGCGAGTATTATATAGGCT
CGCACCTTATGTGTGATAGATATATGGATAGATAGACAGTCTCATTATCT
TGCTCTTTCCAATTTTATTTGACTGACATCCTTACTCAATGTAAGAAACC
TGCAactgattcaatttttcatacttaactttTatttattttgacCCTCT
AATTTGAAAAGACCctagatttgaaaattttcaattcgaaCCCACTCAAA
CCTCCAAGACCTTTACTTTCTATAGTTGAGAACATATCTTTCagcaaaat
gaacaaaaatacaaaagttctTTGGCTTTTACATATCAAACGAAGGTTTC
AAATTAGAAAAGTGCTTTCTTCTTTTGCTCACTCTAGCAGATTGAAAGCA
TTTAAGATGGTTctatttatcaatatttcatgTTGGCCAAACGAGTTTAT
ATGAAAATGCACCTGAGAGTTAGCTGTGACAAATTTAGATCCAGAATAAG
Tgtcaaaactaaaaacaaaagagagttatttcattcttttaaaatgtttt
aaaagcaatttttaactaaattgtatatattttttatatctttaagcact
tttcttttGGAGTGTCTGTTTCTCACCCATTTTTTGATGGCTTTAGGCCT
TTCATGTTCTTGCTAAATTGAATCATGTCATGATTTCTTTGaggaatttt
gaatgaaaatcacaaaatactgaaaatcttACAGAACGGGTAATCAagcc
attttttattggtttgcCAAGCACATTGACACTAGTAGCCTCAAAAGGGg
tttttaaatattatcataagtctgcttgagttttttattcattcagacaT
GACATTGCGAATAGCAAAAGGTCTGTACTAAacctttcttccttttttca
gcatttttacacatgatagttatttgcaaaaaaattcatctctcagaaat
ttcgacattttccttggtttattgtaaaactttctccattttgtaaagta
aaggtgtaaggtgaagcatgacgctacagatcaaatctgtgttttgactg
gactcgccaacctttatgattataagggtacagtctgtttattgcgaAAA
CTCTTTAAACTCAAGATCCCCTGAGAGTgtttagtgttttcatcttactt
taatatacggcgtttgtttgtcatttaattttttgtttgcaacttgCAAA
TCGAGGAGGTTCTGGGTCGCTTCGCAACTTAATTTGTGACATTGATAGCT
TGTTTTTGTCACTCTCGCCTCTCGcatgtctttgctatgcaaacagagtg
gagggacggaagagttctgaaacgcgcgcaaccccttttaGTTTTTATTG
CTAGGGTATGAACatacaagaaaatatttcaaaattgcttcaatcaaggt
ttaaaaagaaaagtgCTTAATATTAAGCACTACTCAGCCTGTAGCAGATt
aaaaatcggcaaaaatcggTTCAACAATACCTTTTCAGGTTTATGTTATA
TGGTTTTAAGTTAGTTTCAGGGTAATCCTAATTGTGTTTCAgtaattttt
attataaaaattagAGAAAAGTGCTTCGGTCAGCCAGAGAAAAGTTCACC
CCAACTTCACCCCAAGGCAATTTAAAGTCATTCATTAACATTGTTGATCG
GAGTGTGAGAACTGAAAAATTTTGGTAGCCAAAGGGaaatggaaaaattt
cgtcTTAGGGGGGCAGACCTTGAAGAACAgtattttagttgtttttagag
ttgtttctaattttaaaaatatgtttctttttttacttaGCATGCGAAGA
TGTCCAGTGTGTAAAAACGTCTTTTCCAACAAGTGGTTTCGAAAACATGT
TGATTCGTGTGAGCGGTCAGTGGAATCTTCTGGATCGGATACAAATGTTG
AAGGATCATCCAATGAACCAACATTCAATGAACACCATTCAAATGATGTA
CCTTCGGAAGGGGTATCCAATGTAATTGAGCCTCCTTCAATAAACGAAGA
GCCACCAAATGTTGAAGAAGTGAACTACTCAGATCCATCCAACCCATCTG
ATCCCTTAAATGTTCCTGAAGAAATGAACCTCGAAGATCTTGATGAAGAA
ATATTAGAGATGATTTCTCAACGTTACTTTGAAAACGCTAATTCTGATGA
ACAAGAGTCTGATAATGATAATGAAATCATGGAGTTTGATCATGAACCTG
CTGACCGCAAC

Coding sequence (CDS) from alignment at sc0000446_pilon:120222..124882+

>XLOC_041238 ID=XLOC_041238|Name=XLOC_041238|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=936bp|location=Sequence derived from alignment at sc0000446_pilon:120222..124882+ (Clytia hemisphaerica_ch_hm2_pilon)
GATGTTGATGAAAGTGAATGGGACTCAACTTTGGTTGAAGCAATGAAGAT
GTTGATGAAAGTGAATGGGACTCAACTTTGGTTGAAGCAATGAACATGCG
AAGATGTCCAGTGTGTAAAAACGTCTTTTCCAACAAGTGGTTTCGAAAAC
ATGTTGATTCGTGTGAGCGGTCAGTGGAATCTTCTGGATCGGATACAAAT
GTTGAAGGATCATCCAATGAACCAACATTCAATGAACACCATTCAAATGA
TGTACCTTCGGAAGGGGTATCCAATGTAATTGAGCCTCCTTCAATAAACG
AAGAGCCACCAAATGTTGAAGAAGTGAACTACTCAGATCCATCCAACCCA
TCTGATCCCTTAAATGTTCCTGAAGAAATGAACCTCGAAGATCTTGATGA
AGAAATATTAGAGATGATTTCTCAACGTTACTTTGAAAACGCTAATTCTG
ATGAACAAGAGTCTGATAATGATAATGAAATCATGGAGTTTGATCATGAA
CCTGCTGACCGCAACCATGCGAAGATGTCCAGTGTGTAAAAACGTCTTTT
CCAACAAGTGGTTTCGAAAACATGTTGATTCGTGTGAGCGGTCAGTGGAA
TCTTCTGGATCGGATACAAATGTTGAAGGATCATCCAATGAACCAACATT
CAATGAACACCATTCAAATGATGTACCTTCGGAAGGGGTATCCAATGTAA
TTGAGCCTCCTTCAATAAACGAAGAGCCACCAAATGTTGAAGAAGTGAAC
TACTCAGATCCATCCAACCCATCTGATCCCTTAAATGTTCCTGAAGAAAT
GAACCTCGAAGATCTTGATGAAGAAATATTAGAGATGATTTCTCAACGTT
ACTTTGAAAACGCTAATTCTGATGAACAAGAGTCTGATAATGATAATGAA
ATCATGGAGTTTGATCATGAACCTGCTGACCGCAAC
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_041238XLOC_041238-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000446_pilongenomesc0000446_pilon:120222..124882 +
Properties
Property NameValue
Aaloc49-468:4242
Aaloc1-45:1