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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000135_pilon:789567..793615+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_041139 ID=XLOC_041139|Name=XLOC_041139|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4049bp|location=Sequence derived from alignment at sc0000135_pilon:789567..793615+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGATAAGCACAGATACACGAGGTCCTAAAGAATGTAATGCACTTTTCAA
TGGTTTTGTCAGCCAACAAGGAATTGGAGCTGATCAACATTTCTGTGCAG
AAACTAATAGTAAATATAATTGACTCTTTTTAGCTCCCGGGGGAGTTACT
TAGGTAATGTTCGGTACAGGGACGTGCCAATGGAGAGGGTctctttttta
ggctctgaagctatctgacagggtcccaaatttactaattttccccattt
ttaatGTCTgcctgatataagcaaaaatgtttttactttcctctttctga
ccaatcttgctgcACATCTGtatcaattcaatgtgaaaaagcttctaaat
tgaaattgacaagtaagcaaacgatatcactcttatttaaaaacaaaacc
ttcaaatctttttccaaatttcagcTGCATTTGGCCTAATTGGAGATACG
GTTCTATTCTTGTACGTCTTGATAAAAGCGACAACAATACACAAAGCGGC
TGAAAAATGTGACCAAAGCCGATGGGTTGAGTTAAATCCAAGAGCCTTTG
CTGTGGAAACCATACAAGAGGCTTTTATCAACCTTCTCAGCAAGTAAGAG
TATTTGATGTAAAAACGACCGTATATTCGGCCCAAGAGTCAATTCTTATT
AGTGCAATTTTCTATTTCAGCGAAATTCAAAAGAGAGTGCACGGTGTAAT
AATTTATTACTAATTTTCTGGCTACTACTATATTCGATATTTGTTCTTTt
cctttaaggccggtctccactttcacgcgaaatgggcgacagtttttttc
tgaatcttttttacctgaagaaaagattacgtcataaactaggtcacagt
gtggatctaaaccacactgaaacgaccgccttccttCACGCATCAcgcac
gctcgcgaaagagcgcgcgcacattgttaacgcctacatgtcatctccag
tacattttagattattcattgaaaacagattacaatatagtcatttttca
cgtctcgattattcaattacgaataaaagacattcagagaaaaaaaagag
aaacacttgggtaatctagttaaaaaaaacgaaagtaaatggtagacaaa
gtaatgagctaaggcaaaacgagattagcgtaccactatgaaagaaaccg
cctccggcggtcgaaaaGTTTCGTGcggcgaacaaaaaaaaagttgaagg
aagttctacttttttcatccgttacgtcatttttgaccaatggaattgct
tcatttttcaaccgaccaatgaccttacaaaaacgtcaaagttttcgctc
atgtcgcgcgaaactggagaccggcctttagttgTTTAACTCGGCATCTG
TTCTACATCAACTCACTTACTTTCCTTTTTAAGAAATGGTTTGCGTGAGG
CCGTTGAATTCAGTGCCAATAAATTTTGCTACGTCAAGAAAATTGATCAG
GATGGACATACAATCGTTGATTGCTCCAAGGAAGCTCCGAGATACTATTT
ATGCCGATATGAGCGTGTAGACGAATTCTGGCCATCCATCATTGGCGTAC
CACTAGATCAAAATGGAGATTATGAAATTCTCGTTGAAGAAGGTACTTCT
GGAAATGATGGCATAACAGATGATTTCTTAGGTGCTaaaaaaaGGTGTGA
AGCACGTGGCAAGGAACTTTTGACAATCGAAAGCGCGGCGAAAATGGAAA
CTGTTACCGATTTGATTAACAACTTTGTGCCACCGTAAGTATTTTTACAt
gaaataattctttttaaagtctattcacgataagtgtgcacaaaattttg
ctttgcttgttatttctcaaccaatctttcaatcttaaaaagtttggtat
cgttgggAAGGTGGGAAGGAGCTTAATAATTCACTGTCAGTTTTTtccgt
gaaatttgaaaagaacatgaagaaaaatgaagaagaaaaaattcaacttt
ttatagATATGTCGTATAAACGttatttttacatctttggaaagcttaaa
gcttggcaatttcaaaaatatatactttgacttggaaatataatttgaaa
tttgcaatatttAACAGAATGTAAAGTAAACCACTTTGTCACCTCGGAGT
TTTACATTGtgtaagaaatttcttttccaaaaaatcagtcaatctacttt
acattctgttgaatacatgttttttttttataagcaagtgtctgccccta
catcaggctcgcattatgcttagcattctattgttctcaaacaatagagc
cattgtttaggtactcaaaactgagcctgcatatgcttataaacattatg
cttataaaagaaaaaaacatgtattgcaaaaatgagaattttataaGTCA
ATAAACAAGTTTCTAGTTTTCTATGAGGTAATTTTCTGAGGTCAAATACA
CCCGAAATCCGCCTGcactaacccccccccccctcgaatGCACCAGCTAA
Gatagagtttttataagatacttaataattggtcatttgaaataataaaa
atgacgcgttctttagaattggtaacaaaattgttttattactggttaac
gacaaccaaatcgaataagagtttgtaaaaactccagcttgtcccgaaaA
TGCACAAGTGCATAAAACATGTTTGGGTCGCTTGTCATAAAAAGTGGCGT
TCAAATTTGAGAtgtcaaacaaaagaaatagaCTATTGATTTGTCAAAGA
GCATCTGCATCTTAAGTTATTTCCTGCTATCTCTCTCTCTACTGTTCGAC
CAGGGATATGTAATAGCgaagctggataacgcacatttgaaaaagccttg
ttctatctctgtaccctgacattaaaattgatatgaaatttaactttttt
aattacaaactcgtgaaatttgaatttcctatacgccaatgattctgctg
ctgcatttatccttcacgattaaaaacttttaattatcaaaagggtctgt
aaaacattggaaaatgacaattaaaaaaaaaaagaaaaacattgttttta
ttagTAAAGTTacaagaaatttcttctgtaagattataaatagcattttt
tcatttgatataccgcgctacaccgtgaagtgcctcactttctaactgat
aatTTTGGGAttggctggagtttttacacttcactaattggttatttgaa
gtaatgacacattctttagaaaaagtaacaaaattgttttattacaggtt
aacgacgaaccaaatcaaacgagagcttgtaaaaactccagcttgtccca
taattttcagattttatgtctgattatggaaagaatttcaagtcaattga
aacaatatttgtgaaaaatatttacacccgaaatttttaaagaggaatCA
TAAAAggttctcaaattcataacacacgctgataaaattagatttcattt
aaaACCTTTTGGGGTATCtgtaaatattattttgatgaaaagcggaaACA
TCATAGCAAAAAATGTGCAGActtactgcatgaatactttgtctgcttca
tttttcttataaaaacaaactctcAAGGGTACAGAGATAGATTTCTATTG
TGAACAGTTTataatagaaaagacaaagaagcaaccCAGTAAGGAATTCT
CGCTCTTCATGGTCCTTCATCCAGCTTCGCTATTACATATCCCTGGTTCG
ACCCATCTACATTAataattgatcatttttgacgttttaatttttttttc
caggcCAGGTATTTTTCCCATCAACATTTTCGAGATATGGGTGGCATTAA
CATTGGATCCTTTAGCTGGTAAAATCACAAGTTGTAACAAAGATATTCTG
CCAAATTTTCGACCATGGTGTCCTTTTGGTGATCAACTCACCGCGGATGA
TGGTGGACTATGCATTCtttttttCAGATTCAGTAAATGTTTTCCAATAC
CAGCTTCAAAATGCGGCGCTGCTCCTTCCATATCCACAATTTGCCAAAAA
CCATCAGCAATATCGACTATTCGAGAATATGTAAGAGTTGCTCGGAAGGA
GATTGGGAACATCAAGAGGGATTGCAGCTCATGTAAAATGAAGCAATAA Coding sequence (CDS) from alignment at sc0000135_pilon:789567..793615+ >XLOC_041139 ID=XLOC_041139|Name=XLOC_041139|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1950bp|location=Sequence derived from alignment at sc0000135_pilon:789567..793615+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGATAAGCACAGATACACGAGGTCCTAAAGAATGTAATGCACTTTTCAA
TGGTTTTGTCAGCCAACAAGGAATTGGAGCTGATCAACATTTCTGTGCAG
AAACTAATAATGATAAGCACAGATACACGAGGTCCTAAAGAATGTAATGC
ACTTTTCAATGGTTTTGTCAGCCAACAAGGAATTGGAGCTGATCAACATT
TCTGTGCAGAAACTAATAcTGCATTTGGCCTAATTGGAGATACGGTTCTA
TTCTTGTACGTCTTGATAAAAGCGACAACAATACACAAAGCGGCTGAAAA
ATGTGACCAAAGCCGATGGGTTGAGTTAAATCCAAGAGCCTTTGCTGTGG
AAACCATACAAGAGGCTTTTATCAACCTTCTCAGCAAcTGCATTTGGCCT
AATTGGAGATACGGTTCTATTCTTGTACGTCTTGATAAAAGCGACAACAA
TACACAAAGCGGCTGAAAAATGTGACCAAAGCCGATGGGTTGAGTTAAAT
CCAAGAGCCTTTGCTGTGGAAACCATACAAGAGGCTTTTATCAACCTTCT
CAGCAAAAATGGTTTGCGTGAGGCCGTTGAATTCAGTGCCAATAAATTTT
GCTACGTCAAGAAAATTGATCAGGATGGACATACAATCGTTGATTGCTCC
AAGGAAGCTCCGAGATACTATTTATGCCGATATGAGCGTGTAGACGAATT
CTGGCCATCCATCATTGGCGTACCACTAGATCAAAATGGAGATTATGAAA
TTCTCGTTGAAGAAGGTACTTCTGGAAATGATGGCATAACAGATGATTTC
TTAGGTGCTaaaaaaaGGTGTGAAGCACGTGGCAAGGAACTTTTGACAAT
CGAAAGCGCGGCGAAAATGGAAACTGTTACCGATTTGATTAACAACTTTG
TGCCACCAAATGGTTTGCGTGAGGCCGTTGAATTCAGTGCCAATAAATTT
TGCTACGTCAAGAAAATTGATCAGGATGGACATACAATCGTTGATTGCTC
CAAGGAAGCTCCGAGATACTATTTATGCCGATATGAGCGTGTAGACGAAT
TCTGGCCATCCATCATTGGCGTACCACTAGATCAAAATGGAGATTATGAA
ATTCTCGTTGAAGAAGGTACTTCTGGAAATGATGGCATAACAGATGATTT
CTTAGGTGCTaaaaaaaGGTGTGAAGCACGTGGCAAGGAACTTTTGACAA
TCGAAAGCGCGGCGAAAATGGAAACTGTTACCGATTTGATTAACAACTTT
GTGCCACCgcCAGGTATTTTTCCCATCAACATTTTCGAGATATGGGTGGC
ATTAACATTGGATCCTTTAGCTGGTAAAATCACAAGTTGTAACAAAGATA
TTCTGCCAAATTTTCGACCATGGTGTCCTTTTGGTGATCAACTCACCGCG
GATGATGGTGGACTATGCATTCtttttttCAGATTCAGTAAATGTTTTCC
AATACCAGCTTCAAAATGCGGCGCTGCTCCTTCCATATCCACAATTTGCC
AAAAACCATCAGCAATATCGACTATTCGAGAATATGTAAGAGTTGCTCGG
AAGGAGATTGGGAACATCAAGAGGGATTGCAGCTCATGTAAAATGAAGCA
ATAAgcCAGGTATTTTTCCCATCAACATTTTCGAGATATGGGTGGCATTA
ACATTGGATCCTTTAGCTGGTAAAATCACAAGTTGTAACAAAGATATTCT
GCCAAATTTTCGACCATGGTGTCCTTTTGGTGATCAACTCACCGCGGATG
ATGGTGGACTATGCATTCtttttttCAGATTCAGTAAATGTTTTCCAATA
CCAGCTTCAAAATGCGGCGCTGCTCCTTCCATATCCACAATTTGCCAAAA
ACCATCAGCAATATCGACTATTCGAGAATATGTAAGAGTTGCTCGGAAGG
AGATTGGGAACATCAAGAGGGATTGCAGCTCATGTAAAATGAAGCAATAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000135_pilon | genome | sc0000135_pilon:789567..793615 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 631-975:3705 |
| Aaloc | 280-627:1385 |
| Aaloc | 112-276:427 |
| Aaloc | 1-108:1 |
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