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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000023_pilon:378886..384406+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_041082 ID=XLOC_041082|Name=XLOC_041082|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5521bp|location=Sequence derived from alignment at sc0000023_pilon:378886..384406+ (Clytia hemisphaerica_ch_hm2_pilon)
TTGAACAACTTTGTAAAATCAGATATGTCTGAGGAGGAAAAATTTGCCAT
TGATGTTCAATTGATGAATGTTGCAGAGCAAAATAAAGTAAGGCCTCATC
AATTATTTGGAAAtattataatttaaaaaaaggtttaactTTGATTGTAT
GATACAGTTTGCATGCACAACTTTTTtcacaataatatttttttaatact
aGTGTGTGAGTTGGTAGTGGGTAGAAATAATTTTTGCGTGAGTGCATGGG
TCAAAAAAGCTGAACAAAACACATCTTAGATTCATTTTTATGTCAAGAGG
TTCAAAATCAAATACTTTGATTTAATTTAAATATAGTATCAAGACAGCAT
ATATGCTTTATCGTACGCTAATCCTGCTGCCTGCTCTGGATAGTTTTCGT
ATCATCAGTAcgtgtttttcaattttagggGGTTCTATTAGCTTGGTGTT
GCAAACACGGTAAAAAGTTGGATGATGTTATCAAACAACACGTCGATGCA
ATGTCAAAAGAGGTTaaaaaaaGACTTGGAGGGGATCCACAGTCACGTCT
ACTGACCTCCCTGTCAGCTAATATCCTGACATCATTTCAGGTGAGTTATA
ATCCAATCCTTTACACAACCTTTCAACAGTGTTTAAATAAATTTGTCAAC
AGTGTTTATAATGATTTTTATCAGATTGATAAGCTTATGCTTGTGAAACT
Tcattaaaaaagtgaaaaatgaaatacctctaagaaaagcaaaaatgtgc
attctattgaaaaaaggtttcttttgttcaaaattttctgaattaacctt
ttctttcttcaaaagaaCACACTTTTCTAAAAACGACcaattttctaaac
ttgcctcaccttaattaaataaaaaaagccTAAATTATTTGTGGTAAATA
ATATCCATTGCTGTGCAAGCACAATTTTGTGTTACTCTTTTATTTATTCT
GCAATTTTGAACAACCCTTAGATAATTCTAACTATCTTGAATTGGAGGAT
TTTTAAAGACttagataaaaatgaaatttcgaaATAGGAAGGTCATCTTG
AAGTCATAGAATAAATATGTCATCAGATATTAAAGGAAGTATCTGATGTA
CTGTATTTGGTCAGATTTTGTTTTATTCCATTGAAAGTCTATGCTTTTGG
ACTACGCAATTGCAAAGATGGCGGACGCAAAACCGTCAATCTGTAACTTA
CGGTACTGATTTTCCAGAAATTTTAACTCTTTGCTTAGTGAACAGTGCTT
AAAAGCATAAGAAAGTTTACACCAAAGATGGAAGAATTGATGCGGaaact
ttttcctgaaaattacAGTTCAACCGGTGCTATACAATCAGAATCTTTGG
TGGCGAATGTACCCGTTCCTGACCTAGCTACCGTGCCCGTGTACCGTGAC
TCTCAACCTCCGAAACCACCGAAAGAACTTCAATACGAATGTAAATGGGG
TTGCAAAAGGTCATTTTCAAAGCCATCAGGAAGGTCAAATCACGAAAGAA
AATGTCCGCTTAAAAGTCACACTAAAGAATTCGAAGATCCTGTATCGaaa
aaaaCTGTCAACCTTAAAGTGACATCACTTAACCTAAATAAAGAATCGTC
GTCAGAACCgataaatccaaaatatttCCAGCCAAAAGTATGGGGCAATC
ACACAGTGAATGACATCGATCAGATCCTTTCTGCCGCGTCCAATGAAACC
AGTCAATGGCGGAAGAATATCTTCAACGTCCCAAGTGGTGCAGTCGGTAA
AAACTTTGTTGAGGAAATCACTCGCTTGATAAATTTATGGAACAATCTGT
CACCTTTGTCGAATGTCGCCTTGAAAGCCCTGTCCGTGTTACCATCGCTC
CTTTTACAGAAACCATCAAAGACATCGAAATCGAGAGAACATACAAAACA
TCTACAGCGACGTCTGGATCTTTGGAGAGAAGGCGATTTTGACTCGTTGA
TCCGCGAAAGCCGAATGctacaatcaaaattttcaaagtctgcTGCTGAT
CGAGTTACATCAATATCGAAACGATTTAGTGATTTGATGTTTCAAGGCAA
AGTGTATGCAGCAATCAAACTCTTATCTAACTCAACGAATTCAAACGGAA
TTGTACCAATCAACGATACCACGTTGCAAATTCTTCAGCAAAAGCATCCT
AGAGGTCGACCAAAGATTGACGAGCTGATTGTTCAGGGACCATTCAACAA
AATCGACCCCACGCTTTTTGAAGCCATTGATGAAGAACTCATAAAAAGTA
TGGCAGCTAAAACAAAAGGTTCTTCCGGCCCCTCCAAGATCGATGCACAA
ATGTGGCAACGTATCCTTTTGTCAAAAAACTTCGGTGATCGTTCTAGTGA
TTTATGCAAGGCGATTGCAAGGATGACGAGAATCATGTGCACTGAACAAT
GCAACAAAGAATCCGGTAGGGACATGGAGGCGTTGTTATCGTGCACCCTG
ATACCTTTGGATAAGAACCCCGGCATTCGACCGATCGGCATCGGGGAAGT
TCTTAGACGCATCGTTGGAAAAACTGTTACAACATTCCTGAGGAATGAAA
TACAAGAAGCAGCTGGCAATCTCCAACTGTGCGCTGGTCAGCTGGGTGGA
TGTGAGGCTGCAGTGCACGCGATGTCAGACATCTACAACGACGAGAACAC
AGACGGTGTTCTACTGGTCGACGCTTCAAATGCATTTAACAGCATAAACC
GTGAAGTTATGATGCACAACATTAACATCCTTTGTCCAACCTTGGCGATG
TTTGCTACCAACTGCTATTCGAACCACGTCCATCTGTTTGCGATTGGAGG
AGCAGAGCTGTCGTCTTCTGAAGGTACAACACAAGGAGATCCGATCGCTA
TGGCTCTCTACGGCATATGTTTGCTTCCCTTGACCGACACCCTCCGAAAC
GTACCAGATACCAAACAAGTCGCGTACGCTGACGACATCACTGGTGCTGG
TAAACTTGTTGCACTACGCAAGTGGTGGGATGACCTAACGCAACTCGGTC
CAACTATCGGCTACTACCCAGAACCTTCTAAGTCATGGTTGATAGTAAAA
CCTGAAATGTATCAAACGGCACTCAACACATTCGAAGGTACGTCTATAAA
GATCACAGCAAAGGGGCATAAACATCTCGGTGCTTCTGTTGGGGAAAAAA
GCTACAAGAAGGAATTCGTGTCAAATAAAGTCGAAACCTGggttaaagaa
atcaaaactttgtCAGACATTGCAATAACTCAACCCCAAGCTGCGTATGT
CGGCTTCGTTATTGGCTACCGGCAAAAATTCAACTACATCATCTGAACTC
TAGACAATATATCAGAATCGCTTCGACCCATCGAAAATGTCATCCGTTTT
CACCTCATATCAGCCATATGTGATGGCAGACAGTGCTCCGATATTGAAAG
GAAGATCCTCTCGTTTCCGATCAAGATGGGAGGCCTTGGAATCATCAACA
TCGAGGATGAGGCTAAATTTCAAAACGAAACAAGTCGTTTGGCAACTAAA
GTGCTAGTCGAGCGCATCATAACACAATCAGATGAATCAATTGATCCAAG
TCAATCGAAAAAGATGTTGAAATCACTAGCCGCTAAACGAATTGGAGAAC
AAAAACGATCACTCGATCAAATCGTTCAACAACTCCCATCAATCAAccaa
aaagctttggaaatcGCTTCATCTCAAGGTGCTTCCTCGTGGCTGACCAC
TCTTCCACTGAAAGAAGATAATTTTGTACTGAATAAACGTGAATTTGCTG
ACGCACTCCACATGAGGTATGGCTGGGAAATGAAGCGACCCCCAGCTTAT
GGATTTGTCTCGTGAACAGGTCGATTTACCACGCTCATCTGTTACTGGGA
ATGAAGCTAGGGCGGATGTTAGTGCTAATGGATTTTGGCAGCGGTAtcaa
agagcattttttgacgtgAAGGTTTGCAACCTTTTAGCTCCGAGCTATCG
CATAAAATCTATTGGCACTACATTCACTTCACTTGAAAAGCAAAAGAAGA
GAGCATACAACGAACGGATTCTTCAAGTTGAGAGAGGGACTTTCACCCCA
TTAGTATTTGGTGCTACAGGTGGTGTAGCCCGAGAATGCTCAATTTTTAT
GAGCAGGTTAGCTGATAAAATCTCGGCAAAACAAAAATGCTCGAAAAGTG
AGGTTGTGAATGGCATACGACGCAAAATTTCCTTCGTTTTGATCCGATCA
GTGGTTGCTTGCCTGAGAGGTGAACGATCGAGTCGTTCGTTTACCCCAGA
ACAAGCGGCACTGAAGGACTCCAAACTGACGGAAATTTTGACGTCCTTGC
ATATTTGAGTGTTGTGTGTTAGACGATTACATAGGCTAgtttttcgaggg
tttcttttcagtttttcatcattttggtcttttcaggtgtttcattgttc
tctttttttaatcaaaaatttataCAAAAGTATGTTTGTTAATATATTTG
ACTCATGTAGTATAtcattttgattaaaataattattaataatatcatct
tttgttttctaaagTCTATGCTTGCAATATACTGATGATTACAAGCAGTG
TAAGTGTGAAGTGTAATCCGAATGGCATATAAATTATATCATTTCAGTTG
GTAATTACCACTGATCTTCACAGGATGTTCAAGCCATTCGACATTTTTGA
TCAATGCCTTGGGAAGCAGGAGCAAAATTTTATATCAGACCACTGTGCCA
ACACGTGGGAGGAAATAACACAAACAGTCCTAGCTGAAAAAGACAAAGAG
GTAAAAAATTAATTCCTACAGGAGTCTGATTATTATATGACACAAACTTC
CTTTCAGTGTGACAAGTGGTTGCagataaaaaaaggaaatgctCAATTGT
AATCAAATTTGTTGATAACTTCTACTTCTGGAATacgtttatttgaaaat
attggacagAAAAGAATCAAACGTAGCCATTAATGCGCTTCAGACAATAA
AGCAATATATAGTTCTAAAGTTGATAACCTTAAGGGCAGAAAtgttggca
ggaatttaatttggcaggtgatatatttttgacataaaaacACTACTGAT
TAAAACTGTTTTAAGGCCTAAATAGCACACTCTTGCACTAAACAACATTG
TTTGAAACCTGTTTTCTTTTCAGCTTGCTACATGGTTCAACCCAGAAACG
TCTTTTATCGAAGAGAGCAATGGTATCAAGCGTGCAGTCCAATGTATTGG
GATTAGAGTTCTCAAACTTAGACAGTTTGATTGCAATTTTGATGTAAGTT
AACACTTTTTATTCCACTTATTAAAATCTTAGAgtggcaaattcaaaata
tagtaaagaaaaattcttttgagctaaatttctttaaacaggccgtaact
cacttgagatTACTTTGATCTGCCCTGACTTGTGTCAATCAACAAACCAT
TGTTTTTCAATAGATTATCAAATCCTACGTTCAAAAGTTTGGTAAGGGTG
GGAAGAGGACTTACAATGTGAACGCTAAGTTTTGCGATTGTAAAACATCA
ACCTTGGacgatttaaaaaat Coding sequence (CDS) from alignment at sc0000023_pilon:378886..384406+ >XLOC_041082 ID=XLOC_041082|Name=XLOC_041082|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1260bp|location=Sequence derived from alignment at sc0000023_pilon:378886..384406+ (Clytia hemisphaerica_ch_hm2_pilon)
TTGAACAACTTTGTAAAATCAGATATGTCTGAGGAGGAAAAATTTGCCAT
TGATGTTCAATTGATGAATGTTGCAGAGCAAAATAAATTGAACAACTTTG
TAAAATCAGATATGTCTGAGGAGGAAAAATTTGCCATTGATGTTCAATTG
ATGAATGTTGCAGAGCAAAATAAAggGGTTCTATTAGCTTGGTGTTGCAA
ACACGGTAAAAAGTTGGATGATGTTATCAAACAACACGTCGATGCAATGT
CAAAAGAGGTTaaaaaaaGACTTGGAGGGGATCCACAGTCACGTCTACTG
ACCTCCCTGTCAGCTAATATCCTGACATCATTTCAGggGGTTCTATTAGC
TTGGTGTTGCAAACACGGTAAAAAGTTGGATGATGTTATCAAACAACACG
TCGATGCAATGTCAAAAGAGGTTaaaaaaaGACTTGGAGGGGATCCACAG
TCACGTCTACTGACCTCCCTGTCAGCTAATATCCTGACATCATTTCAGTT
GGTAATTACCACTGATCTTCACAGGATGTTCAAGCCATTCGACATTTTTG
ATCAATGCCTTGGGAAGCAGGAGCAAAATTTTATATCAGACCACTGTGCC
AACACGTGGGAGGAAATAACACAAACAGTCCTAGCTGAAAAAGACAAAGA
GTTGGTAATTACCACTGATCTTCACAGGATGTTCAAGCCATTCGACATTT
TTGATCAATGCCTTGGGAAGCAGGAGCAAAATTTTATATCAGACCACTGT
GCCAACACGTGGGAGGAAATAACACAAACAGTCCTAGCTGAAAAAGACAA
AGAGCTTGCTACATGGTTCAACCCAGAAACGTCTTTTATCGAAGAGAGCA
ATGGTATCAAGCGTGCAGTCCAATGTATTGGGATTAGAGTTCTCAAACTT
AGACAGTTTGATTGCAATTTTGATCTTGCTACATGGTTCAACCCAGAAAC
GTCTTTTATCGAAGAGAGCAATGGTATCAAGCGTGCAGTCCAATGTATTG
GGATTAGAGTTCTCAAACTTAGACAGTTTGATTGCAATTTTGATATTATC
AAATCCTACGTTCAAAAGTTTGGTAAGGGTGGGAAGAGGACTTACAATGT
GAACGCTAAGTTTTGCGATTGTAAAACATCAACCTTGGacgatttaaaaa
atATTATCAAATCCTACGTTCAAAAGTTTGGTAAGGGTGGGAAGAGGACT
TACAATGTGAACGCTAAGTTTTGCGATTGTAAAACATCAACCTTGGacga
tttaaaaaat
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000023_pilon | genome | sc0000023_pilon:378886..384406 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 523-630:5414 |
| Aaloc | 403-522:5124 |
| Aaloc | 250-402:4598 |
| Aaloc | 88-249:429 |
| Aaloc | 1-87:1 |
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