XLOC_041012 (mRNA) -

Overview
NameXLOC_041012
Unique NameXLOC_041012
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000024_pilon:2007258..2013528+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_041012 ID=XLOC_041012|Name=XLOC_041012|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6271bp|location=Sequence derived from alignment at sc0000024_pilon:2007258..2013528+ (Clytia hemisphaerica_ch_hm2_pilon)
TTGGCATACGCTATCGCCACGGAAACTTCTTCATCACCCATAACAGCCAC
TGCCACTACAACGGCGCCCTCGTTTACAGTCCCACCAGCGCCTTTCCCGC
CCTACGATAGTAAGAATAAAACAAAACTCCATATCGGAGCACTTGTGCCA
TTCCTCTTGACACGTGACAAATTAATGTTTCATGCAGCTATGCATACCGC
CGTACGGCTGATCAATAATGACACCAATATGCTGAAAAATTACGAACTCG
TCCTTGATTATCGAGATTCAACGGTATGTATTGGATTTATGTTAGATACT
TTTAGCGAAGAATCCTTCTTTGACAGTTCAAAATAGAATATACACGAATC
TCCTTCAGAAATGTCTAGTTTTGTGGATTTCAGACTTTATCAgagatttt
cttacaaaaatgattttaacctTTACTTTCTGTTTCATTTTTAGACTTTG
ATTGGATTTTCATACCTCATGTTTTACGATTTGGTGGAGAAAGGACCTAT
AAAGCAAATGCTGATTGGACCAGCTTTCGCTAGAGCAACTCGTGCCGTTG
CAGAGCTTACTACGCGATTTAAATTACCTCAGGTAATCCGCTTTTTTGTG
AATAGATTGTTTGTATTGAAACCCACGGAGATGTTTTAAGTTCATTAAAA
TTTGGTTAGTAGTTGAAATTGCGAAATTGATTTTACGCACTTTTCCGTTA
GTCATTTTTCTGTACAAAGTAATTTTCCTCTCACATCCACTAATGACAAT
CTAACAaagaacattttctttttcgttctctCAAACAGGTGACCTATGCA
ACTTTACAGAAATTTGGAGCTCGAGAGGTTCCGGATCCAGAAATCCAACA
AATTGGAGTTCCACGAGTTGAACGTCACTTCCCTTTCCTCGTTAAAGCAA
CGCCTTCACTCTCATCCTTCAATGAAGCTATCGTCAAAATCTTCCAAAAC
TTCAAATGGAAACGTGTTGCAATCTTGTATGAATATTCCGCTCAACAATT
TTTCTCAGTGCGTACTTTTATTATTCCTTTTCGttacaaactttataaga
atgatgtTTTTCCATTATTCATTAATATTCTTTTAAGAAGTTAAAACTGG
AGAAAATCATCCTTAATCTTAAAgcattcttacagtattctacTCTTAGG
TCAAGATCAATATTTAACCTAAATTTAACATGTAGGATACACATGAAACG
TAAAATGGTATTTAGGCTTACTGGGGATAATTTAAGCGTGTTGCTCAATC
TATGCTGTGCTATGCCCATGCGACATCGCATCTTTTAACAAGTTGTAGAG
GTCAAGATCTTGTTCGTAAAAGTTCTTGTGTTTTTCGAAATTATGCATAT
TTTGGAGCTATTCATTTTTCATCTGCATTTTTTCTGTACCTATTCTTTTT
AGACTGCGTACGATCTTTCATTACGACTCAAGAGCGCAGGTATCGAGGCT
GCCGTTATTCAAGGGTTTTCAGGGACAATTTTAACAGTCGATGCACAATT
GGATGCAATCTTGGAGAAAGATGTTCGAATTATATTCGGTATTTTCAGTT
CGAAAGGAGCACGTCGGATTTTTTGTCAGGTAATGAAGAATTTATAATCA
CGGCTACCGCCGGAGTAAGATTATTATTCCATTATGATTTGCActttaaa
taattcaaaatgtGATTCTCCCAACCAATGAGTGTAACACGTAAAGTTTC
CTTTTAACCCCGCATTCATTTAAAAGTAAGTCGGCGCTAAGCTTATGTAG
TAAATACCTATTTTCATTGCGCTTTTGACCCAATGAGCTTTTATTTTACC
ATTTCCGTCGACATCATTCACATTCACTCTACTCTATCAGAAAAGAAGCT
AGTCTAGCTGATATAATgtacaaaaacatcaaatttaacTCTGCTCTAAT
AACATTGTACAGGCTTACAAGCGTGGTATATACGGTTTAAAATACCAGTG
GTTGACTGTTTCCACACTCAAATCCACATGGTGGAAACCTGTTACTTACA
ACGAACCACAGAATTGCACTGTAAAACAATATCTCACTGCATCTGATGGT
TATATGTCAATCGCTAACACCAATGTGAGAAGAGATGGTGTTCGTAGCAT
TGGAGGACAGGTACAAATTTCATCATCTTCATCGCCCGAGACTCCATATC
TATGATCATCTTTTTAATATCTTGGCATGGAGAAATATTATCTTttctaa
aattcttttttcgtcCATGTATGGATTCTATTAAATTTAAGAACGCTTTG
CATTGGCTGTTTTGTTAATATCTGTATATTGGAAGTTgaaattgagacag
gggtgtttgagTCACATCAGTCTATCCTTACATTACGGCTATCATTATTG
tcaaaaaacgaaagaaaaagttGGGTTCCAAAATGTGACTTGATCAATCC
ATCAATGGTTTGTGACTTTTCAGACTTAGTTCCTACCTACTACACTAACT
AACTTTGACACGTTCTTGTTGTTAGACTGCTGAAGAAATATGGGATCTGA
TGAAACGTCAGAAAGCACACGATTACTTCCGCTACATGAAAGAAGCAGGC
TTATCCAATGAACCACCTCCCATTGATAATGAGATTAAAGAAGAATCTGC
TTTCGCTTTTGATGCTGTCTATCTAGCCGCTATAACACTGgataaaatca
ttaaaacaaAAGGTTAGTAAGGTTGACTTTGGCTGGCGGAACCTCTAGGA
CTCAAATCTATCAATTATTTAAACACACTTACTTTCCAAAAGCCCTTAAA
AATGGCACTCTACTACTCGAACTCTCCGACCAGCAAGGCTATAAGTAGCA
TATatcagaaaaataaagatcaaaATGACGTTTAGTTCTATAAAATCTTT
AATGAATCAAAACTTTAATGAACAATACATAATTATCTGGTATTTATCAA
AACAGCTCCTTTTATCGTTAGGATGAAAGTTGCAAAACAAACATTGTGTG
CTAGCTAGGAACTTAATGATTATTTTCAACCATAGGAAAAGGTGCATTGA
TGACGgaatatttcaatgaaagtCAAGCACTGTATATGACGGACGTCATG
CTCAACTCCTCTTTTGAAGGACTTACGGTAGGTGAATTTAGATTCATTGT
AAATAAAAAGTCGCAAAATTTGCTTATATATGCATGGCCTTTgcaagtaa
gttttaaaacaatgtATTCTGTTGtgtacaatcaaagtcataatatttgg
gaaaaaagggaaatttccacgaaatcttacaaccacaaacgatttggaat
ttggttggaagggtagacttaaaacttacggccttaggatctgaggatcc
aaaagtccaagaatggtccaatagggctcagaatatagcctggaagtctt
tAAACCCcacccgaattgaaatattcgaataaatttatcaattagcccaa
aagcgactttctcgcccgaactttaaattgctaaaaacgaggaattaacg
aaaattctcaatatattttgaccgaggtTGCAGAGTATCTTATCTGATAC
GGTGTTACCGTCATTTCATTCTAGCTTCTTACTATTCATACAAAATAAAT
GCTCATTCTTTAGGGTCGCCTTCACTACGGTGGCAAATCTGGAGAAGAAA
GACAGGGCATTGTGCGCATTCAACAATTTCGTTCAAACTATACACAAGTC
ACTCACAATATTTCCATCAGCCGTAAGTCTATTTTCTGATTTAGTTCCTT
TTTTGTCTAGAAAGGTATAAAGTTCATAAATTCCTATTTCTATAAATCCA
GCCCCTGTTTTAACTCGTCAACTGTATTTCTAACATGACGATGAACTTAC
ttaatgtttcaatattttgcgGATTTCAGGTGCTGAACTTCACGATATTG
GACACTTTGATATTGAGAGCAAAGTGATTGACATTTACGACAAAACTGGA
ATGACACTTTTTAAAGGTAATGCAAATGAAATATACTCCCCAATATACTC
AATGCGTACACATCGTAAACATGCAGAGAAATTACCTCTTTGATCTGTCA
TATAAAGTCAATAAAGAGGCGAGAAAAGTGATCCACCCGCGATTTAAGAA
AAGCGTATCCTCAGTTATATTTCTGTTACATCAATGCAATAGTCATGCAG
AAGCTAAAAATTCACAACCaataacattttaaaagaaatctcAACTCAAC
TGTTTTAGCCGCGGTGACTAAAGTCCACATAGTCAGTGGCAAAGCATTGA
AATATGCATATGCGAATCATGCAAGTTTGATTTTTGCTTTCCTCTTTCCT
ACAATTAATTGAACTATCGAAAATGAGATGTTCGGGTTATCTCTCTGGAA
GAATATTAACAGTTGATCGCACGCTTTGATCATCCCTTATAATTTGATTT
AGGTGGACGAGTGATCAAAGACCGTAAGACGATCAACCGGATACCAGAGA
CATACTCTTTGACCACCATTGGCATCTTGTGGGGTTTAGCAGCCGCTGGA
TTGGTTCTTTGCATCTGCGTCTTGTTCATTAATGTCAAGTATAGAAACAT
AAGGTAAGCAAGCTACAGTGACCACTTTGCTCGATAAAAAACCACCAGCT
TTTACCTTTTTACCTTCTCCTTTTGACAAGTACTAAACTGGGACTCGAAC
CTAATTTTTGCATTACTGGAGTTATTTCATAACTGGCTTTCCTCACTTAT
CCAACTTTAATtaccaaaatttttaatttgatttttcaggATGATCAAGA
TGAGTTCTCCCAACATAAACAATGGCATTATAGCGGGAAGTATTATTTGT
TATGCGTCTGTGGTTGTTTATGGGCTCGATTCACGCTTCTTAACACCCAG
AGGAATTGGTATAGCTTGTAACGTAAGTAAAGTTTAATTCCTTGAATTTC
ATTTTCTAttgtcatcttcatttttctttacccattaaaactagaAACAA
TCACAATGGGGTTAAACCgaaagattttcttttcctaaaaattaaagttt
tttgtttagctaacttttaatttggctgaTAAGTCTGCAGAAGTCTGTAA
CATTTTATAAATAACCCTTGATCCTACCAATAATCTGATGCTAATGCGGG
TCGTTTGCTGTATCTTTAACGCGATTCTCAATGATCGTATACTAACTCTC
TATATACTAACTCAAAATTACCTTTTTCTATCGTTGAATTTCTTTTGACA
TCTGGTTGTTTTATGTATATTTTCAGGCAGTGACCATTGCTCTCTCCATC
GGCTTCACCTTATCTTTCGGTTGTCTCTTCACAAAGACATGGAGGATCTA
CAAAATATTCACAGCTGCAAAAACCATGGAAAAAGTGGTAAGTGTTTCTA
TCTTTTACAAATGCGTGACTGTATTCGTGACAATCTTTTCCCCAACAATT
TCCATAACTCTAGAATATTCgataaaaatttgggccaaattaactGTAAA
TAGAACCGCTTAGGTgacccttagtgactaaattttgacgaggtgactaa
aattagggccgactaataattaaggccgactaaaattaaggccgactaag
ttctggccgataaggtatctatTAAATCATAACGCTTAATTTAGTAGTTT
TTTATGCAGGGCGTTGCTTTCAAGGATTCGCAACACTGGTGttaatacca
aatttataaatacTTATATTTTTCGGTTTTCTTTCCTACAGTCGATCAAA
GATACACATTTGTACTTCATCATCACGCTGTTGGTTagcattgatatttt
tgttttcttgctgTGGGTTTTCTTATCTCCATTCAACGTAGAAGAAAGCG
AACTGGAGCAAATCGTAAGTACCATTAGCGTTACGACTCTAAAACCCTAC
TTTAAGTCTTACTGACAAGTCTTGGTGACAAAGTGAGAGTTTTAAATTTA
TTACAGTCCAAAAAATAAAGATCCCCTAAAGTTTTATAGTGTCTTTTCGA
GTGGGAAGGAGggtaaaatgtaattttaaagaCGATGAAATTTCTACCCC
ACCGGGTACCTGTGGCCTAAGTATTTTAGAATGAGATGTTAAAATCTGAA
TATCtcttgatttttctaaattgtAAGTATTTTATATTCCCAAATTTTTG
TCCTTTTCAACGTTTCATTTACACAACACCCGCTCTATCTTCAGGTTTAt
caaaatgctgacgtcatcgattCGTTCTTCTACCACAAATGCACGTGTGA
ATATCAACTTCATTTCACGGTCACAATGTATTGCTATAAAGGCTTCTTAC
TCATATTCGGATTGTTCTTGGCATGGGAAACAAGGAATGTCAAAGTCGCT
GTTCTCAATGATTCAAAATAT

Coding sequence (CDS) from alignment at sc0000024_pilon:2007258..2013528+

>XLOC_041012 ID=XLOC_041012|Name=XLOC_041012|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4350bp|location=Sequence derived from alignment at sc0000024_pilon:2007258..2013528+ (Clytia hemisphaerica_ch_hm2_pilon)
TTGGCATACGCTATCGCCACGGAAACTTCTTCATCACCCATAACAGCCAC
TGCCACTACAACGGCGCCCTCGTTTACAGTCCCACCAGCGCCTTTCCCGC
CCTACGATAGTAAGAATAAAACAAAACTCCATATCGGAGCACTTGTGCCA
TTCCTCTTGACACGTGACAAATTAATGTTTCATGCAGCTATGCATACCGC
CGTACGGCTGATCAATAATGACACCAATATGCTGAAAAATTACGAACTCG
TCCTTGATTATCGAGATTCAACGTTGGCATACGCTATCGCCACGGAAACT
TCTTCATCACCCATAACAGCCACTGCCACTACAACGGCGCCCTCGTTTAC
AGTCCCACCAGCGCCTTTCCCGCCCTACGATAGTAAGAATAAAACAAAAC
TCCATATCGGAGCACTTGTGCCATTCCTCTTGACACGTGACAAATTAATG
TTTCATGCAGCTATGCATACCGCCGTACGGCTGATCAATAATGACACCAA
TATGCTGAAAAATTACGAACTCGTCCTTGATTATCGAGATTCAACGACTT
TGATTGGATTTTCATACCTCATGTTTTACGATTTGGTGGAGAAAGGACCT
ATAAAGCAAATGCTGATTGGACCAGCTTTCGCTAGAGCAACTCGTGCCGT
TGCAGAGCTTACTACGCGATTTAAATTACCTCAGACTTTGATTGGATTTT
CATACCTCATGTTTTACGATTTGGTGGAGAAAGGACCTATAAAGCAAATG
CTGATTGGACCAGCTTTCGCTAGAGCAACTCGTGCCGTTGCAGAGCTTAC
TACGCGATTTAAATTACCTCAGGTGACCTATGCAACTTTACAGAAATTTG
GAGCTCGAGAGGTTCCGGATCCAGAAATCCAACAAATTGGAGTTCCACGA
GTTGAACGTCACTTCCCTTTCCTCGTTAAAGCAACGCCTTCACTCTCATC
CTTCAATGAAGCTATCGTCAAAATCTTCCAAAACTTCAAATGGAAACGTG
TTGCAATCTTGTATGAATATTCCGCTCAACAATTTTTCTCAGTGACCTAT
GCAACTTTACAGAAATTTGGAGCTCGAGAGGTTCCGGATCCAGAAATCCA
ACAAATTGGAGTTCCACGAGTTGAACGTCACTTCCCTTTCCTCGTTAAAG
CAACGCCTTCACTCTCATCCTTCAATGAAGCTATCGTCAAAATCTTCCAA
AACTTCAAATGGAAACGTGTTGCAATCTTGTATGAATATTCCGCTCAACA
ATTTTTCTCAACTGCGTACGATCTTTCATTACGACTCAAGAGCGCAGGTA
TCGAGGCTGCCGTTATTCAAGGGTTTTCAGGGACAATTTTAACAGTCGAT
GCACAATTGGATGCAATCTTGGAGAAAGATGTTCGAATTATATTCGGTAT
TTTCAGTTCGAAAGGAGCACGTCGGATTTTTTGTCAGACTGCGTACGATC
TTTCATTACGACTCAAGAGCGCAGGTATCGAGGCTGCCGTTATTCAAGGG
TTTTCAGGGACAATTTTAACAGTCGATGCACAATTGGATGCAATCTTGGA
GAAAGATGTTCGAATTATATTCGGTATTTTCAGTTCGAAAGGAGCACGTC
GGATTTTTTGTCAGGCTTACAAGCGTGGTATATACGGTTTAAAATACCAG
TGGTTGACTGTTTCCACACTCAAATCCACATGGTGGAAACCTGTTACTTA
CAACGAACCACAGAATTGCACTGTAAAACAATATCTCACTGCATCTGATG
GTTATATGTCAATCGCTAACACCAATGTGAGAAGAGATGGTGTTCGTAGC
ATTGGAGGACAGGCTTACAAGCGTGGTATATACGGTTTAAAATACCAGTG
GTTGACTGTTTCCACACTCAAATCCACATGGTGGAAACCTGTTACTTACA
ACGAACCACAGAATTGCACTGTAAAACAATATCTCACTGCATCTGATGGT
TATATGTCAATCGCTAACACCAATGTGAGAAGAGATGGTGTTCGTAGCAT
TGGAGGACAGACTGCTGAAGAAATATGGGATCTGATGAAACGTCAGAAAG
CACACGATTACTTCCGCTACATGAAAGAAGCAGGCTTATCCAATGAACCA
CCTCCCATTGATAATGAGATTAAAGAAGAATCTGCTTTCGCTTTTGATGC
TGTCTATCTAGCCGCTATAACACTGgataaaatcattaaaacaaAAGACT
GCTGAAGAAATATGGGATCTGATGAAACGTCAGAAAGCACACGATTACTT
CCGCTACATGAAAGAAGCAGGCTTATCCAATGAACCACCTCCCATTGATA
ATGAGATTAAAGAAGAATCTGCTTTCGCTTTTGATGCTGTCTATCTAGCC
GCTATAACACTGgataaaatcattaaaacaaAAGGAAAAGGTGCATTGAT
GACGgaatatttcaatgaaagtCAAGCACTGTATATGACGGACGTCATGC
TCAACTCCTCTTTTGAAGGACTTACGGAAAAGGTGCATTGATGACGgaat
atttcaatgaaagtCAAGCACTGTATATGACGGACGTCATGCTCAACTCC
TCTTTTGAAGGACTTACGGGTCGCCTTCACTACGGTGGCAAATCTGGAGA
AGAAAGACAGGGCATTGTGCGCATTCAACAATTTCGTTCAAACTATACAC
AAGTCACTCACAATATTTCCATCAGCCGGTCGCCTTCACTACGGTGGCAA
ATCTGGAGAAGAAAGACAGGGCATTGTGCGCATTCAACAATTTCGTTCAA
ACTATACACAAGTCACTCACAATATTTCCATCAGCCGTGCTGAACTTCAC
GATATTGGACACTTTGATATTGAGAGCAAAGTGATTGACATTTACGACAA
AACTGGAATGACACTTTTTAAAGGTGCTGAACTTCACGATATTGGACACT
TTGATATTGAGAGCAAAGTGATTGACATTTACGACAAAACTGGAATGACA
CTTTTTAAAGGTGGACGAGTGATCAAAGACCGTAAGACGATCAACCGGAT
ACCAGAGACATACTCTTTGACCACCATTGGCATCTTGTGGGGTTTAGCAG
CCGCTGGATTGGTTCTTTGCATCTGCGTCTTGTTCATTAATGTCAAGTAT
AGAAACATAAGGTGGACGAGTGATCAAAGACCGTAAGACGATCAACCGGA
TACCAGAGACATACTCTTTGACCACCATTGGCATCTTGTGGGGTTTAGCA
GCCGCTGGATTGGTTCTTTGCATCTGCGTCTTGTTCATTAATGTCAAGTA
TAGAAACATAAGgATGATCAAGATGAGTTCTCCCAACATAAACAATGGCA
TTATAGCGGGAAGTATTATTTGTTATGCGTCTGTGGTTGTTTATGGGCTC
GATTCACGCTTCTTAACACCCAGAGGAATTGGTATAGCTTGTAACgATGA
TCAAGATGAGTTCTCCCAACATAAACAATGGCATTATAGCGGGAAGTATT
ATTTGTTATGCGTCTGTGGTTGTTTATGGGCTCGATTCACGCTTCTTAAC
ACCCAGAGGAATTGGTATAGCTTGTAACGCAGTGACCATTGCTCTCTCCA
TCGGCTTCACCTTATCTTTCGGTTGTCTCTTCACAAAGACATGGAGGATC
TACAAAATATTCACAGCTGCAAAAACCATGGAAAAAGTGGCAGTGACCAT
TGCTCTCTCCATCGGCTTCACCTTATCTTTCGGTTGTCTCTTCACAAAGA
CATGGAGGATCTACAAAATATTCACAGCTGCAAAAACCATGGAAAAAGTG
TCGATCAAAGATACACATTTGTACTTCATCATCACGCTGTTGGTTagcat
tgatatttttgttttcttgctgTGGGTTTTCTTATCTCCATTCAACGTAG
AAGAAAGCGAACTGGAGCAAATCTCGATCAAAGATACACATTTGTACTTC
ATCATCACGCTGTTGGTTagcattgatatttttgttttcttgctgTGGGT
TTTCTTATCTCCATTCAACGTAGAAGAAAGCGAACTGGAGCAAATCGTTT
AtcaaaatgctgacgtcatcgattCGTTCTTCTACCACAAATGCACGTGT
GAATATCAACTTCATTTCACGGTCACAATGTATTGCTATAAAGGCTTCTT
ACTCATATTCGGATTGTTCTTGGCATGGGAAACAAGGAATGTCAAAGTCG
CTGTTCTCAATGATTCAAAATATGTTTAtcaaaatgctgacgtcatcgat
tCGTTCTTCTACCACAAATGCACGTGTGAATATCAACTTCATTTCACGGT
CACAATGTATTGCTATAAAGGCTTCTTACTCATATTCGGATTGTTCTTGG
CATGGGAAACAAGGAATGTCAAAGTCGCTGTTCTCAATGATTCAAAATAT
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_041012XLOC_041012-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024_pilongenomesc0000024_pilon:2007258..2013528 +
Properties
Property NameValue
Aaloc1999-2175:6095
Aaloc1876-1998:5642
Aaloc1765-1875:5177
Aaloc1633-1764:4691
Aaloc1483-1629:4355
Aaloc1396-1479:3832
Aaloc1285-1392:3564
Aaloc1195-1284:2988
Aaloc1006-1191:2476
Aaloc808-1005:1913
Aaloc631-807:1403
Aaloc412-630:789
Aaloc274-411:445
Aaloc1-273:1