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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000024_pilon:1958090..1962184- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_040986 ID=XLOC_040986|Name=XLOC_040986|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4095bp|location=Sequence derived from alignment at sc0000024_pilon:1958090..1962184- (Clytia hemisphaerica_ch_hm2_pilon)
GAAGAACAATCCACGTCATCAACGAAGGAGAGCAAAAAGAAATCCAAAGA
AAACCTAAGCAAGGATACAGAGGACTCCACCTTAGATGATAACAACGAAA
ACAACAATCTAATCAATGAAAAAGATAAAAAGAAATCCAAAAAAGATAAA
TCCAATACGTCAAACAGACAACCGGTTTCTTTCAAAACAAAATATTTTCC
ATGGATTGTTTGCGCTACAAGCTTTGTGGTCCAGTTTTTCGTGCTGGGCT
TTTATAAAGCTTTTGGTCCGGTCTATGTGAAATTGTTACAAGAAGAACCA
GAGGGGTATGGAGGTAGCCCCGTCGCTACTTGTAAGTATTTACTTTGCTT
GCCACCATAATCTCCCAGTATCCTTGTCTCGAGAAGCTTTTAACCAATAG
GAATGCGATTTATAAGGAGCTTTACAGTTGACGTTAGAAATAAAAGATTT
AGGCCAGCAAAATTCCCTTTTCTCCATGTGCACAATCCTAGATTAAAGTA
GAGTCTCTTTAACTTGAATGTCCTCTTAACTCGAACACGTTTTCTCGTCC
CTTTAGTTAACAAAGCCTTATAAACCTTACTCCATAACTCGAAATTTCAC
TAACTCGAACAAATTGGTGTTCTCCGTGTGAGTTCGGGTTATGGAGACTC
CAATGTATTGAATTCATTGAAATTTTTCCTTTTTTATAGCATGGGTAGCT
TCACTTTCCATCAGTACATCCTACCTGAGCACACCTTTATCCTTTGAAAT
CATCCGACGAATCAAGTTTCGACCCGCTATGTTGATCGGTGCTACGTTAT
CAGGTATTCATTCAGTAATTATCCTTTAAAACTGCCTTCTCAAATTTGAT
TAGATTTATCACTTTTTTCACTTCAAGCGCTTAACATGTGTCAAACATCT
TACGAATTGTTTAATTTTTTTAATCGAAGAAATTCCTATATTTCAACGAT
TTTGAATTATCTATCTCGTGAATATCGAAGCTCACGGTTTCATTGAGTTT
TGTAGGATGTTAAACCCAAAATTTAATCCAAAGTAGTAGTGTGTAGTCTA
ATGACTGATTTGAAAAATCCAGTTCGGACTAACTTAATAAGCAAAATTTT
TAATCCATACGAACTAGTATGAAATTAGCATGAACAACAACAAAACTTAC
TGTACAGGTCTTAGCAGGCCTACTACATTGAGCAAGGAATGTGTTCGTGT
TAGCATCCAACACGCTTAATTTCTCATAAAAGATATAATGCTACTTGTAA
TAGAAGATACGTCAAATATTTTCTTTGTGTGATTCTCTGCACGATAGATG
AGACTGCTCGATACTTTTTAAGTAGAGCGTGTTACATTAATGAGAAACAG
ATTATTTCTTTATCAATATTTAAAGTTCCAATATTTGATATTTAATGCAA
CTCATACTACTGTTGTTATTTCCAGGTCTTGGTTTGCTTGTCTCCTCATT
CGCTGATAGTGTTTACATTCTCTACGTCACGTTCGGATTGTTGTTCGGAT
TCGGTTCCAGTCTGTGTTACAGTTGCTCTCTCTTGATTCTGCCTCGTTAT
CATACAACATACTGGGCGTTGGCTCATGGCATCGCACTAGCCGGGAACGG
TTTAGGAGGCATGGGACTTTCACCGGCTAATGGTATGCTTTTGGATTCTG
TAGGCATCAAGAAAGGCTTCAGGGTATGTATGTGTTATATGAAACGAGTT
AACCAATGCGAGTCTCGTACAAACTAGAAAGAAAGCTCGAGGAAGAAATA
GTCCTAATGGTTTAAATCATTTTTGACCTTTCTTGGTTCGACGACAAAAA
TTAATTATTTGTTTAAAGTTCAAATCTTGAGTTCTAAAGATGGTCATGAA
AATAAATATCTTATAATTTTCTACTCCCTTCTTCAGATCATGGCTGCAGT
GTCGTTTGGTGTTTTGTTTACATGTGGTTTAGTCTACGAGACACCTCCAG
AGAAGGATCCCGCTGAAGAAGAAAATGAAGAGGACGATGAAGAAGATCTA
GAAAGTCTAAATGAAGAAGATGAAGAAAAATTATTAGAAGAAGAAGTCTT
CTATCATGACACAATATGGAAGAATAAACCGCTTCTCATATTTCTTCTCT
CCACATACTGCTTAAATTTTGGATACTACGTACCTTATGTCCACTTGGTG
AGTATAGTTGGTTTATAATCCCCTTGTGACTGGTGCATTTATTATTACCA
TCAGTAAAGAGATCCTTCTATTTGGTATAAACTTGGATCATTGCAACAAG
GTATTATAGAAAACTACTTTGATTTTTAGTAAGGAATGGCGTGGCAAGTG
TGGTAAGTATGGCTAGCCAGATAATCTTCTCCGTCTGGTCTGGAACCTTT
CTATGCTTCTTCTCTAAACACTTCTGATGGTCACAGGAAATTTTGTGCTG
TTGCTGTGTTCTGGAGGACTAAAATTATTATAAAATGTTTAATGAGTTAT
ATTTTGATTTCCAGGTAAAGTTATCACTGGACGAGGGTGTATCGAAATCA
CAAGCAGACTTGTTACCAGGCTTACTTTCTCTAGCTCAGTCAGTTGGTAA
AGTGTTCATCGGCAAAGTATTCTCCTACCCTAGCGTCAACCGTATACGAG
CATATCAACTCAGCTTGGTCGCTTTATGCATCGCAACAACTTTCGTCCCA
GTCTTATCAAAGTCATACCCAGGCTTGTTAGTCTACGCAATAGCTTTTGG
ATTTTCTGACGGTTGCGGCCAGGCGACGAATATGATTATTATAGGAGATT
TAGCTGGTAAAGAATTACTACCGAAAGCTTACAGCACCTTTTTGGTATGC
TCCGCTTCTGCTTTCGTGGTTGGTCCACCAATTGCAGGTTCGTTTCCTTT
TTCTTGATATCCTTTAATCTTTAATCTCAAAAGACGACAGTAAGTCAACA
GGCTTTCTTCCTCCCTTTGAACGTTAATCTCTTTGTTCCAGGGGAAATGT
CATTTGATCGATCAACAGTTTCCCTCCCGTCATTTTATAGCAATTGGACA
CCCTCCTATCACAAAGTAGGCTACGTCATAGCTTCCTTCGTTTCGAGCGT
AAAACTCCTACTCTAAGGTTTAAAAGCCTGGAGTTGTCTATTGTGTAGAC
TAATGACAGAGCCGGTAGGACCTTCATTAGAAAACTTTGCTAAAAATATT
GTCTTAGGTGAGAAAAACCTTGTAATTTCACCGCCCCGTTTCCTAATTTG
TTTAGACGACAGGATTGTCTTCAACTGGTTTAGACCCACACGCTGATTAT
TTGTATGTCATTACTTAACTAATGTTTTTACTTCTTGGTTATTTGAAGGC
GCTGTTTACACGGCGACTGGTGATTACTCAATCGCTTTCTTCATGTGTGG
AGCTATGGCGTTCGGCTCGGCTGTCCTCCTCTTTCCAGTGACGTGTATAC
GGGACGAAGAACAATTCAAATATCGAGCTAAACGAAGAAAAGAACGAGCA
GAAGCTAAAAAAATAAGAGAAGAACGAAAGAAAATGGGTATGATACATTT
GTTCATTTGTTTTTTGATTTAGTGTTTGGGATTCTCTTCTTACTCTACTA
AATTAGCCTGGGTATCAAGACAATACACTCATCATTGTTTAAAATTGTGT
CTGTGTCAGGTGGATTTCCGTCTAAACCTGACCGGGAATGAGATTTTTGT
TTATTCATCAAATTAGAAAAAAATAAGGACGGGTTTCCGTCTGAAAAGAT
GGGTTTCCCTACTCCTCTTCTAGCCTGAATATCCAGACTAAAAGCTTTTA
GGAAAAAACTACCTTAACATGAAAAAAGTTCAAAGATGTTATACATCAGG
CACTGGTGCTTTCATTGTGCAGTTTAAGCAGTTTGAGGATTGACTCAACT
TTTAAAATATATTTTGAATTTACTTCCCTAATCCAGGCTTACCAGAAGAA
GAAGCTCCATCTACACCAAAGGACCATCTGTCGGCTGACAAGATGAAAAA
GATACGACAATCACAAGTCTCCCTACTCACACGTAGCTGGCATAGCATTG
ATTTCAAACAACACAAATCTAAGAGTAAAGAAAGTATACGTAGTCGTGCT
AGTAGGAGAAATGTCGATTTGAATGAGGTCAAAGTTGATGCTTGA Coding sequence (CDS) from alignment at sc0000024_pilon:1958090..1962184- >XLOC_040986 ID=XLOC_040986|Name=XLOC_040986|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3450bp|location=Sequence derived from alignment at sc0000024_pilon:1958090..1962184- (Clytia hemisphaerica_ch_hm2_pilon)
GAAGAACAATCCACGTCATCAACGAAGGAGAGCAAAAAGAAATCCAAAGA
AAACCTAAGCAAGGATACAGAGGACTCCACCTTAGATGATAACAACGAAA
ACAACAATCTAATCAATGAAAAAGATAAAAAGAAATCCAAAAAAGATAAA
TCCAATACGTCAAACAGACAACCGGTTTCTTTCAAAACAAAATATTTTCC
ATGGATTGTTTGCGCTACAAGCTTTGTGGTCCAGTTTTTCGTGCTGGGCT
TTTATAAAGCTTTTGGTCCGGTCTATGTGAAATTGTTACAAGAAGAACCA
GAGGGGTATGGAGGTAGCCCCGTCGCTACTTGAAGAACAATCCACGTCAT
CAACGAAGGAGAGCAAAAAGAAATCCAAAGAAAACCTAAGCAAGGATACA
GAGGACTCCACCTTAGATGATAACAACGAAAACAACAATCTAATCAATGA
AAAAGATAAAAAGAAATCCAAAAAAGATAAATCCAATACGTCAAACAGAC
AACCGGTTTCTTTCAAAACAAAATATTTTCCATGGATTGTTTGCGCTACA
AGCTTTGTGGTCCAGTTTTTCGTGCTGGGCTTTTATAAAGCTTTTGGTCC
GGTCTATGTGAAATTGTTACAAGAAGAACCAGAGGGGTATGGAGGTAGCC
CCGTCGCTACTTCATGGGTAGCTTCACTTTCCATCAGTACATCCTACCTG
AGCACACCTTTATCCTTTGAAATCATCCGACGAATCAAGTTTCGACCCGC
TATGTTGATCGGTGCTACGTTATCAGCATGGGTAGCTTCACTTTCCATCA
GTACATCCTACCTGAGCACACCTTTATCCTTTGAAATCATCCGACGAATC
AAGTTTCGACCCGCTATGTTGATCGGTGCTACGTTATCAGGTCTTGGTTT
GCTTGTCTCCTCATTCGCTGATAGTGTTTACATTCTCTACGTCACGTTCG
GATTGTTGTTCGGATTCGGTTCCAGTCTGTGTTACAGTTGCTCTCTCTTG
ATTCTGCCTCGTTATCATACAACATACTGGGCGTTGGCTCATGGCATCGC
ACTAGCCGGGAACGGTTTAGGAGGCATGGGACTTTCACCGGCTAATGGTA
TGCTTTTGGATTCTGTAGGCATCAAGAAAGGCTTCAGGGTCTTGGTTTGC
TTGTCTCCTCATTCGCTGATAGTGTTTACATTCTCTACGTCACGTTCGGA
TTGTTGTTCGGATTCGGTTCCAGTCTGTGTTACAGTTGCTCTCTCTTGAT
TCTGCCTCGTTATCATACAACATACTGGGCGTTGGCTCATGGCATCGCAC
TAGCCGGGAACGGTTTAGGAGGCATGGGACTTTCACCGGCTAATGGTATG
CTTTTGGATTCTGTAGGCATCAAGAAAGGCTTCAGGATCATGGCTGCAGT
GTCGTTTGGTGTTTTGTTTACATGTGGTTTAGTCTACGAGACACCTCCAG
AGAAGGATCCCGCTGAAGAAGAAAATGAAGAGGACGATGAAGAAGATCTA
GAAAGTCTAAATGAAGAAGATGAAGAAAAATTATTAGAAGAAGAAGTCTT
CTATCATGACACAATATGGAAGAATAAACCGCTTCTCATATTTCTTCTCT
CCACATACTGCTTAAATTTTGGATACTACGTACCTTATGTCCACTTGATC
ATGGCTGCAGTGTCGTTTGGTGTTTTGTTTACATGTGGTTTAGTCTACGA
GACACCTCCAGAGAAGGATCCCGCTGAAGAAGAAAATGAAGAGGACGATG
AAGAAGATCTAGAAAGTCTAAATGAAGAAGATGAAGAAAAATTATTAGAA
GAAGAAGTCTTCTATCATGACACAATATGGAAGAATAAACCGCTTCTCAT
ATTTCTTCTCTCCACATACTGCTTAAATTTTGGATACTACGTACCTTATG
TCCACTTGGTAAAGTTATCACTGGACGAGGGTGTATCGAAATCACAAGCA
GACTTGTTACCAGGCTTACTTTCTCTAGCTCAGTCAGTTGGTAAAGTGTT
CATCGGCAAAGTATTCTCCTACCCTAGCGTCAACCGTATACGAGCATATC
AACTCAGCTTGGTCGCTTTATGCATCGCAACAACTTTCGTCCCAGTCTTA
TCAAAGTCATACCCAGGCTTGTTAGTCTACGCAATAGCTTTTGGATTTTC
TGACGGTTGCGGCCAGGCGACGAATATGATTATTATAGGAGATTTAGCTG
GTAAAGAATTACTACCGAAAGCTTACAGCACCTTTTTGGTATGCTCCGCT
TCTGCTTTCGTGGTTGGTCCACCAATTGCAGGTAAAGTTATCACTGGACG
AGGGTGTATCGAAATCACAAGCAGACTTGTTACCAGGCTTACTTTCTCTA
GCTCAGTCAGTTGGTAAAGTGTTCATCGGCAAAGTATTCTCCTACCCTAG
CGTCAACCGTATACGAGCATATCAACTCAGCTTGGTCGCTTTATGCATCG
CAACAACTTTCGTCCCAGTCTTATCAAAGTCATACCCAGGCTTGTTAGTC
TACGCAATAGCTTTTGGATTTTCTGACGGTTGCGGCCAGGCGACGAATAT
GATTATTATAGGAGATTTAGCTGGTAAAGAATTACTACCGAAAGCTTACA
GCACCTTTTTGGTATGCTCCGCTTCTGCTTTCGTGGTTGGTCCACCAATT
GCAGGCGCTGTTTACACGGCGACTGGTGATTACTCAATCGCTTTCTTCAT
GTGTGGAGCTATGGCGTTCGGCTCGGCTGTCCTCCTCTTTCCAGTGACGT
GTATACGGGACGAAGAACAATTCAAATATCGAGCTAAACGAAGAAAAGAA
CGAGCAGAAGCTAAAAAAATAAGAGAAGAACGAAAGAAAATGGGCGCTGT
TTACACGGCGACTGGTGATTACTCAATCGCTTTCTTCATGTGTGGAGCTA
TGGCGTTCGGCTCGGCTGTCCTCCTCTTTCCAGTGACGTGTATACGGGAC
GAAGAACAATTCAAATATCGAGCTAAACGAAGAAAAGAACGAGCAGAAGC
TAAAAAAATAAGAGAAGAACGAAAGAAAATGGGCTTACCAGAAGAAGAAG
CTCCATCTACACCAAAGGACCATCTGTCGGCTGACAAGATGAAAAAGATA
CGACAATCACAAGTCTCCCTACTCACACGTAGCTGGCATAGCATTGATTT
CAAACAACACAAATCTAAGAGTAAAGAAAGTATACGTAGTCGTGCTAGTA
GGAGAAATGTCGATTTGAATGAGGTCAAAGTTGATGCTTGAGCTTACCAG
AAGAAGAAGCTCCATCTACACCAAAGGACCATCTGTCGGCTGACAAGATG
AAAAAGATACGACAATCACAAGTCTCCCTACTCACACGTAGCTGGCATAG
CATTGATTTCAAACAACACAAATCTAAGAGTAAAGAAAGTATACGTAGTC
GTGCTAGTAGGAGAAATGTCGATTTGAATGAGGTCAAAGTTGATGCTTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000024_pilon | genome | sc0000024_pilon:1958090..1962184 - |
Properties
| Property Name | Value |
|---|
| Aaloc | 1522-1728:208 |
| Aaloc | 1333-1518:796 |
| Aaloc | 958-1329:1632 |
| Aaloc | 697-957:2210 |
| Aaloc | 451-696:2669 |
| Aaloc | 337-447:3405 |
| Aaloc | 4-333:4096 |
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