XLOC_040973 (mRNA) -

Overview


Name	XLOC_040973
Unique Name	XLOC_040973
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000016_pilon:2220400..2222992-
coding sequence from alignment at sc0000016_pilon:2220400..2222992-

mRNA from alignment at sc0000016_pilon:2220400..2222992-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_040973 ID=XLOC_040973|Name=XLOC_040973|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2593bp|location=Sequence derived from alignment at sc0000016_pilon:2220400..2222992- (Clytia hemisphaerica_ch_hm2_pilon)
CGTAAGCCGAAATTGCGACGTGTCGAATCCAAAGAACATTTACTGGGTGA
AGAGGAATACGTCGTCGTTGATTTTGTCGGCAATGTCGAACTTTCCAGTC
GTAAGTCGTCAAGAGTTGAGCAACCAGATGATCTGCAGTTGGATGTCCAC
CTTGATGAGGAGGAACCGGAATCAGCAATTGGAATGACACCTCCTTCATC
GCAATCGCCAACGTCGAATATATCCCCTACATTTGATGATATTTCAGATA
ACATTTATGTTGCTGCTTCACCAGAAAAGCCTTCAGTTGAGATCTCCACA
AACGAGAAACCCGAAGAATCTCTTATCGAGAAATCAGACATTGACGTCCC
TTTCACAGACAACCAGGAACGAGCCGATGTAGAAATCAAGATTGATGTCG
ACGTACCGGTTGCTCCAATTTCAGAATCTAAACCAGAGGAAGTTTTACCA
AAGCAATCCGATAATGTTGCTGAGAAGCCGAAAAGTAAAGGCTTGAAGGG
ATTAAAAAACAGACGAAAAACTGAAGAGATACCAACTCCACCAAAGGCTG
AAACTCCACCACAAGCTGATTCACCCACTTTGATGTCTCGATCATCATCC
AACCGAAGTATCAGTTCGCGACGGAGTATTGATGAATCAGGCAGCAGACG
TGGTTCACCTCGGACCAGTACGGTATTACAAAACAAACTTTTATTTGATC
AAAAGGCTTCAGGTCAATTTAAAAAGAGTCCATCATCATCGTCGACAACC
AGTTTGAATTCGTTGCGTGAAGGACGGCAGGAATCGTTGAGAGGCTCCAA
CGGAAGACCTGTATCAGGGACAGTTGCTGGTACTTTAAGCATGTTTGAAG
CCAATTCACCTGGAGGACGCTCCAAGAATGCTACTAAGAAAAGCTGATAA
CAATTGGGGCGCTTCCCTCGAAACGAAAGCTACACCCGTGGCGAAGGTTG
AAGAGCCGGCGCCGACACTGGAAAAACCACCCGTCGAAGAATCCAAACCA
GTATCCACCGGCAAAAAGAAGCGATTTCCATTTAAGAAAAAGAAGTCATC
CAATATTTCAAACAAAAATATGTCGGAAACACCATCGGGAGACGTCCAAC
TCGTTAGTGCAACTCCGGTCAAGAGTGACTTTCAAGAGCGTGCTATTGAC
GTCCCCACCGAAATTGTTCAAGCTACGGACGCTGCAGAACTAAAGGTGGA
AGAACCGATCAATGAGAAGAAAAAGAAATCAGGATCTTTAATGTCACGAA
TGAAAAGACGAAGTCGTAAAAGTTCCACTGAACATTCTGATAACGAGTTG
ACCACATCGGTGGAGATTGCAGCCAAAGTTGAAGATCCTGTTATCGAGGA
ATCGTCTACTCATTTACCGCCAATCGTTGATACTGGTGTTGATCAAACGT
TACCAGAGCAGTCAGTTTCTATTGATGTCAAGCAACCTGAACCTTCACCA
GCTCCTATTGAGTCTGACGCATCCTTTTCGATCGACAGTAGACAAGTAGC
TTCTGTTGAGGATTTGGTGTCACCAGAAGATGACCCACCAAGTCCTGCTC
AAGCCTCAGAGGAGGTGAAATCTTTGTTAGAAAGCATCATCGATCGTAAA
CCATTCGAAGATAGTTCTTCTACCACTAAAAAGAAGAAATTAAGATTGAA
AAAGAAATCGAAAAATAAAATAGAAACTGAGAAACCTCTTCCGTCAGTTG
AACTTGTCGTTACACCGACTCCCGTTAAAGAAGAAGTCGTTGACGAGGGA
ATCTCCGAGAATAAAATCACTGATGACGTGTCGATTTCTGATTGGCCAGA
AGAAATGATGAATGATAACAACAATGACGTCATCGTAGAGGACGAGAAAA
AAGTCGAACCGTTACCGACGATCGAAGGAGAGCTGGAAAGCCCGTTAGCA
ACCAGTGAATTGATACCTCAAATATCAGTCGAACCAGCTGATGATACCGT
CACTAATGACGTCACTGACGGACATGATGACGGAATGATGGACGTCAGTT
TACATGATGATAACGCTAGTAGTATTTATTCGCCCGACGATGACTCTTTA
TCGATGACAGGCTCTATAAACACTGAGAAAAAGAAAAAGAGACGCTTCAA
GTTTGGTCTTCGTAAAAGCAGTAGTAAGAAGAAAGAGAAACAACAACAGC
TCTCCCCTCAAAACGAATCAGACATCTGGGAGCATAATGACGATCATAAA
TTAGAAAAGAAAAATTCGTCCAAGAAATTGAAGCGTCCCAAAAGTCTTGA
TTTCCTTGCCGATGTCATCCACCCGAGTCATAAGAAAGATGATAAAAAAC
AACGCCCGGTTTCTGTGGCGGAACACGCCGAAGAACAACCGCCTGCTCCT
AAATCGCCTACTAAGAGAAAAACATTAAGCTTATTCAAGAAGAAGAAGAA
GCAGTCGTCTTCGGATACATCAACTCATGACCGCACAATATCTGATGTCG
AATCTGATCAAGTTCCGTCACCCACTGATGTTTTTAAAATACCGGACGTG
GTTGATGGCGGAAATAAAAACGGACATGCAACTTTATCAGTTGATCATTC
AGAGCATAGTGTAAACACTGAAATGTCGCTATCTGTTAAATAA

Coding sequence (CDS) from alignment at sc0000016_pilon:2220400..2222992-

>XLOC_040973 ID=XLOC_040973|Name=XLOC_040973|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5186bp|location=Sequence derived from alignment at sc0000016_pilon:2220400..2222992- (Clytia hemisphaerica_ch_hm2_pilon)
CGTAAGCCGAAATTGCGACGTGTCGAATCCAAAGAACATTTACTGGGTGA
AGAGGAATACGTCGTCGTTGATTTTGTCGGCAATGTCGAACTTTCCAGTC
GTAAGTCGTCAAGAGTTGAGCAACCAGATGATCTGCAGTTGGATGTCCAC
CTTGATGAGGAGGAACCGGAATCAGCAATTGGAATGACACCTCCTTCATC
GCAATCGCCAACGTCGAATATATCCCCTACATTTGATGATATTTCAGATA
ACATTTATGTTGCTGCTTCACCAGAAAAGCCTTCAGTTGAGATCTCCACA
AACGAGAAACCCGAAGAATCTCTTATCGAGAAATCAGACATTGACGTCCC
TTTCACAGACAACCAGGAACGAGCCGATGTAGAAATCAAGATTGATGTCG
ACGTACCGGTTGCTCCAATTTCAGAATCTAAACCAGAGGAAGTTTTACCA
AAGCAATCCGATAATGTTGCTGAGAAGCCGAAAAGTAAAGGCTTGAAGGG
ATTAAAAAACAGACGAAAAACTGAAGAGATACCAACTCCACCAAAGGCTG
AAACTCCACCACAAGCTGATTCACCCACTTTGATGTCTCGATCATCATCC
AACCGAAGTATCAGTTCGCGACGGAGTATTGATGAATCAGGCAGCAGACG
TGGTTCACCTCGGACCAGTACGGTATTACAAAACAAACTTTTATTTGATC
AAAAGGCTTCAGGTCAATTTAAAAAGAGTCCATCATCATCGTCGACAACC
AGTTTGAATTCGTTGCGTGAAGGACGGCAGGAATCGTTGAGAGGCTCCAA
CGGAAGACCTGTATCAGGGACAGTTGCTGGTACTTTAAGCATGTTTGAAG
CCAATTCACCTGGAGGACGCTCCAAGAATGCTACTAAGAAAAGCTGATAA
CAATTGGGGCGCTTCCCTCGAAACGAAAGCTACACCCGTGGCGAAGGTTG
AAGAGCCGGCGCCGACACTGGAAAAACCACCCGTCGAAGAATCCAAACCA
GTATCCACCGGCAAAAAGAAGCGATTTCCATTTAAGAAAAAGAAGTCATC
CAATATTTCAAACAAAAATATGTCGGAAACACCATCGGGAGACGTCCAAC
TCGTTAGTGCAACTCCGGTCAAGAGTGACTTTCAAGAGCGTGCTATTGAC
GTCCCCACCGAAATTGTTCAAGCTACGGACGCTGCAGAACTAAAGGTGGA
AGAACCGATCAATGAGAAGAAAAAGAAATCAGGATCTTTAATGTCACGAA
TGAAAAGACGAAGTCGTAAAAGTTCCACTGAACATTCTGATAACGAGTTG
ACCACATCGGTGGAGATTGCAGCCAAAGTTGAAGATCCTGTTATCGAGGA
ATCGTCTACTCATTTACCGCCAATCGTTGATACTGGTGTTGATCAAACGT
TACCAGAGCAGTCAGTTTCTATTGATGTCAAGCAACCTGAACCTTCACCA
GCTCCTATTGAGTCTGACGCATCCTTTTCGATCGACAGTAGACAAGTAGC
TTCTGTTGAGGATTTGGTGTCACCAGAAGATGACCCACCAAGTCCTGCTC
AAGCCTCAGAGGAGGTGAAATCTTTGTTAGAAAGCATCATCGATCGTAAA
CCATTCGAAGATAGTTCTTCTACCACTAAAAAGAAGAAATTAAGATTGAA
AAAGAAATCGAAAAATAAAATAGAAACTGAGAAACCTCTTCCGTCAGTTG
AACTTGTCGTTACACCGACTCCCGTTAAAGAAGAAGTCGTTGACGAGGGA
ATCTCCGAGAATAAAATCACTGATGACGTGTCGATTTCTGATTGGCCAGA
AGAAATGATGAATGATAACAACAATGACGTCATCGTAGAGGACGAGAAAA
AAGTCGAACCGTTACCGACGATCGAAGGAGAGCTGGAAAGCCCGTTAGCA
ACCAGTGAATTGATACCTCAAATATCAGTCGAACCAGCTGATGATACCGT
CACTAATGACGTCACTGACGGACATGATGACGGAATGATGGACGTCAGTT
TACATGATGATAACGCTAGTAGTATTTATTCGCCCGACGATGACTCTTTA
TCGATGACAGGCTCTATAAACACTGAGAAAAAGAAAAAGAGACGCTTCAA
GTTTGGTCTTCGTAAAAGCAGTAGTAAGAAGAAAGAGAAACAACAACAGC
TCTCCCCTCAAAACGAATCAGACATCTGGGAGCATAATGACGATCATAAA
TTAGAAAAGAAAAATTCGTCCAAGAAATTGAAGCGTCCCAAAAGTCTTGA
TTTCCTTGCCGATGTCATCCACCCGAGTCATAAGAAAGATGATAAAAAAC
AACGCCCGGTTTCTGTGGCGGAACACGCCGAAGAACAACCGCCTGCTCCT
AAATCGCCTACTAAGAGAAAAACATTAAGCTTATTCAAGAAGAAGAAGAA
GCAGTCGTCTTCGGATACATCAACTCATGACCGCACAATATCTGATGTCG
AATCTGATCAAGTTCCGTCACCCACTGATGTTTTTAAAATACCGGACGTG
GTTGATGGCGGAAATAAAAACGGACATGCAACTTTATCAGTTGATCATTC
AGAGCATAGTGTAAACACTGAAATGTCGCTATCTGTTAAATAACGTAAGC
CGAAATTGCGACGTGTCGAATCCAAAGAACATTTACTGGGTGAAGAGGAA
TACGTCGTCGTTGATTTTGTCGGCAATGTCGAACTTTCCAGTCGTAAGTC
GTCAAGAGTTGAGCAACCAGATGATCTGCAGTTGGATGTCCACCTTGATG
AGGAGGAACCGGAATCAGCAATTGGAATGACACCTCCTTCATCGCAATCG
CCAACGTCGAATATATCCCCTACATTTGATGATATTTCAGATAACATTTA
TGTTGCTGCTTCACCAGAAAAGCCTTCAGTTGAGATCTCCACAAACGAGA
AACCCGAAGAATCTCTTATCGAGAAATCAGACATTGACGTCCCTTTCACA
GACAACCAGGAACGAGCCGATGTAGAAATCAAGATTGATGTCGACGTACC
GGTTGCTCCAATTTCAGAATCTAAACCAGAGGAAGTTTTACCAAAGCAAT
CCGATAATGTTGCTGAGAAGCCGAAAAGTAAAGGCTTGAAGGGATTAAAA
AACAGACGAAAAACTGAAGAGATACCAACTCCACCAAAGGCTGAAACTCC
ACCACAAGCTGATTCACCCACTTTGATGTCTCGATCATCATCCAACCGAA
GTATCAGTTCGCGACGGAGTATTGATGAATCAGGCAGCAGACGTGGTTCA
CCTCGGACCAGTACGGTATTACAAAACAAACTTTTATTTGATCAAAAGGC
TTCAGGTCAATTTAAAAAGAGTCCATCATCATCGTCGACAACCAGTTTGA
ATTCGTTGCGTGAAGGACGGCAGGAATCGTTGAGAGGCTCCAACGGAAGA
CCTGTATCAGGGACAGTTGCTGGTACTTTAAGCATGTTTGAAGCCAATTC
ACCTGGAGGACGCTCCAAGAATGCTACTAAGAAAAGCTGATAACAATTGG
GGCGCTTCCCTCGAAACGAAAGCTACACCCGTGGCGAAGGTTGAAGAGCC
GGCGCCGACACTGGAAAAACCACCCGTCGAAGAATCCAAACCAGTATCCA
CCGGCAAAAAGAAGCGATTTCCATTTAAGAAAAAGAAGTCATCCAATATT
TCAAACAAAAATATGTCGGAAACACCATCGGGAGACGTCCAACTCGTTAG
TGCAACTCCGGTCAAGAGTGACTTTCAAGAGCGTGCTATTGACGTCCCCA
CCGAAATTGTTCAAGCTACGGACGCTGCAGAACTAAAGGTGGAAGAACCG
ATCAATGAGAAGAAAAAGAAATCAGGATCTTTAATGTCACGAATGAAAAG
ACGAAGTCGTAAAAGTTCCACTGAACATTCTGATAACGAGTTGACCACAT
CGGTGGAGATTGCAGCCAAAGTTGAAGATCCTGTTATCGAGGAATCGTCT
ACTCATTTACCGCCAATCGTTGATACTGGTGTTGATCAAACGTTACCAGA
GCAGTCAGTTTCTATTGATGTCAAGCAACCTGAACCTTCACCAGCTCCTA
TTGAGTCTGACGCATCCTTTTCGATCGACAGTAGACAAGTAGCTTCTGTT
GAGGATTTGGTGTCACCAGAAGATGACCCACCAAGTCCTGCTCAAGCCTC
AGAGGAGGTGAAATCTTTGTTAGAAAGCATCATCGATCGTAAACCATTCG
AAGATAGTTCTTCTACCACTAAAAAGAAGAAATTAAGATTGAAAAAGAAA
TCGAAAAATAAAATAGAAACTGAGAAACCTCTTCCGTCAGTTGAACTTGT
CGTTACACCGACTCCCGTTAAAGAAGAAGTCGTTGACGAGGGAATCTCCG
AGAATAAAATCACTGATGACGTGTCGATTTCTGATTGGCCAGAAGAAATG
ATGAATGATAACAACAATGACGTCATCGTAGAGGACGAGAAAAAAGTCGA
ACCGTTACCGACGATCGAAGGAGAGCTGGAAAGCCCGTTAGCAACCAGTG
AATTGATACCTCAAATATCAGTCGAACCAGCTGATGATACCGTCACTAAT
GACGTCACTGACGGACATGATGACGGAATGATGGACGTCAGTTTACATGA
TGATAACGCTAGTAGTATTTATTCGCCCGACGATGACTCTTTATCGATGA
CAGGCTCTATAAACACTGAGAAAAAGAAAAAGAGACGCTTCAAGTTTGGT
CTTCGTAAAAGCAGTAGTAAGAAGAAAGAGAAACAACAACAGCTCTCCCC
TCAAAACGAATCAGACATCTGGGAGCATAATGACGATCATAAATTAGAAA
AGAAAAATTCGTCCAAGAAATTGAAGCGTCCCAAAAGTCTTGATTTCCTT
GCCGATGTCATCCACCCGAGTCATAAGAAAGATGATAAAAAACAACGCCC
GGTTTCTGTGGCGGAACACGCCGAAGAACAACCGCCTGCTCCTAAATCGC
CTACTAAGAGAAAAACATTAAGCTTATTCAAGAAGAAGAAGAAGCAGTCG
TCTTCGGATACATCAACTCATGACCGCACAATATCTGATGTCGAATCTGA
TCAAGTTCCGTCACCCACTGATGTTTTTAAAATACCGGACGTGGTTGATG
GCGGAAATAAAAACGGACATGCAACTTTATCAGTTGATCATTCAGAGCAT
AGTGTAAACACTGAAATGTCGCTATCTGTTAAATAA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_040973	XLOC_040973-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000016_pilon	genome	sc0000016_pilon:2220400..2222992 -

Properties


Property Name	Value
Aaloc	892-2595:1705
Aaloc	1-888:2594

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XLOC_040973 (mRNA) -