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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000042_pilon:1077613..1081454+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_040923 ID=XLOC_040923|Name=XLOC_040923|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3842bp|location=Sequence derived from alignment at sc0000042_pilon:1077613..1081454+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGATGCCCCGCTCGTTCCTACTGAAGAATTATTACCCGCGGAACGATAT
GGAAGATATACAAGCAGCTGCAGGTAAAAATAAAGCCTTCACTTTTCGCA
GAAACTACAGCTGACTTTCTCTTATTCCGTCTTCaaagttaaaaaagatt
tttcggaTTGGAGAAAGATTCGAACTACGGAAAGTATTTTGGATGACTTT
CCAGCTGAgcggaccaatattttagttcgaattacagaaagattcgaata
atagaagttcgaattacggagagtTGATTGTACCGTTTTGCGctatatgt
ttttttctttattttttctatcGAAATAACTGGAGGATAATCCTTGTTAT
TGACTTAATCCACTTTTTATTTCGTATATTTCAAATTGTACACAATTGTG
CGAAAGCATCTTTTAGCCTAGAATTGTAAGATGACGAGCCTTTACGAGAA
CGAAATTCTTGATTAATTGGAGATGGAGGTACAATTTACGCCATTGTTgt
cacaaatatttttattcgtaccactttctttcatttacAGCAAATCTTTT
GGACCTTGCATCTTCTGCACCAGCTCCTAAAGAGAAGATAGTTCATGGTG
TTTTGAGGTATAATGACCTCTTGAAGTGGAATTATGAGTATGAGAAATCA
TATTGGTTTGATACTAGTGCCATGAATGAAAGAAACAACCCTTACCAACC
TCACGAAGATGGCACTTCTTCTTCGCCCGCTTCTTCTAATGCGTCTTGCT
CCCCTCAAAGATATGGTGCAAGTACATCAGGTAATGCTCACCAATTTTCC
CCTTTATAATTTATGCAATTTAGTGAACCAGCGGATTCTAGCCACAGTCA
TTATATTCCTTGGCCCATATACACTAGGTAATTTCTAGTAAAGTTTCTAA
AGAATTTTTGTCTTgattcatccaaaaatatttctttccaggTAGCAGCA
GTAGTTGTGAGCTTTCTCCCAAGGAAAGCGATCTCATTATTCCACGTGCT
CTCGCTACCGGTGATTTTTCCACCAAAACATTCATGAACACAACCATTCA
ACCGGCAGCCGATGATTTTGTTGAGTCAGCACGAATTACAGAAAGCGATA
CTTTACAGACCGAAATGAAGGTACCCGAAGAGTTGAAAGTACCACCGAAA
TTGAACCCCGTCACACCACCTGTTATTACAACGACCCCTCCTGTTGCCAC
GACAACCACCATCAACACGTCAGCACTGACCGATGACAATGAAGATCATC
TTTCAAGTTTGTTCGAGTAAGACCTCTTCACTTCTTATTTATTTCGCTGT
TCAATTCATTCTACTTTGGGGGGAAATATTTAACTTCACTTAGCATTGTG
CTCAAATTGAACGTGACTTTGATACTTCCTATGAAGGAATTTGGTTATAT
CAGCCTCGTTCCGGTGTAATCCAAGCTTTATTTgcgttactgatggacgc
cagtaAGTATATCAATACGCTGATAACGCAGGGGACGAGATTGTGGTAAT
GTAGTAATTTTTATAGCCTTGAGAGGAAAATGTGCCAATGAGATAATAGC
TCACTAATGATATTaatattttcattctttttcatttactgAAGTCCTCA
AAGAGGATATAAAATTTAGAACTGAGAAACGTTCAACCAACTGTCTGGGA
GTTGGTCCGGTCGCCCTCTTTCGCCTAAAGATGCACTAGCTCAATTTTTA
AACTTGCTAATGTTACgaattcaaaatttcagcaaaacaCTCGAAACAAC
GGAACAAGCGATCAGACAATTTTTCGACAACAATCGACTCAATGCTGACG
ATATCTCTGAAGATACAGGTCTCGATAAACTTAATCTCCAAAATTTCATG
GATGGTCTCACCGATCTTCCAGTGGATGATAAAACAGAACTTTATCGATG
GTATTTGAATAAAATGCAGAAATTAACCAATAAAGATACATTGGAAGCTA
AAACTGATGAGAGCTACACCTGTCATAAATGTGGCAAAATTTTCACGTAT
AAAAGTTACTTGGAACGCCATATTAAATATGTTTGTCCAGACAGTGCTGG
TCGAACCTGGAAATGTACGTATTGTGGAAAAGCGTTTCAATACCCGTGCT
ATTTGAGACGCCACATCCGGAGTCACACAGGTAGAGTTCATAGTTTTAGT
GCTCTTATTTAttaaaatgcctcgaaaatctTACGATCTTCGATGAAGTT
TTCGGAATGTAACCTTTAGATCAGCTAAACTTTTTTCAGTTCCGAGGAAA
ACATTCTCATCGCCTTTACAACGGAAAAAGTGGGTAGATatgaaaaacta
aatttaatTAGTTATTTAATTAGGCAATCAATCAATAAGTCATAAGCTTT
TTGCTAGGCAATTGTACGCAGCTGACATTTTTTGCAGGTATACCCGATAG
AAATAAACGCAAGATCCCgaaaaggctctaattagcatattttcATGGTG
CTAAAGCAATTTAGAGGATTAGAACCGGCTGGGATCTTTAcctagttttg
ccagaaaactgATTTTTAGGCCAAttgtttgccactaattttgaatttaa
agaatGTATACGGCTTTATAAGGGTATCTAAGAGACCCGACTATGGTGTG
CTGAGTCAGCATACTGACCCGATTAAACAATAAGATAAGGGCACTTTTCC
CCTATAAACTGAAAGTACGAATCATATGCCATTGGTCAATTACGTTTGGA
AGGTTTAGTTTCgtactttaaattttgaacgGTTTCATGTCCGAAATATT
GAAACGAAGCACTGAAATTTGGTAAATTGATTGTTTTCTCTAATGACAAA
TACAAGAAGCTATTTCTCTAATAATTTAGCTCGAAAAATTGTTTGACACT
CAATTCAATCTCTtcctctttatttttctttcaggtgaatCACCGTACAA
GTGCGACAAATGTGACCGCGCGTTTGTCCGTTCCACTGATCTACAACGCC
ACATACGTAACCATACGGGTGAAAAACCCTATAGATGCACGCAATGTTCA
CGAGCGTTCGCCCGCTCAACAGATCTCAAAAGACATATGAGGACGCATAC
AGGTATTTTAGCATTATGTGGATGTGTTAACACGTTCAATCGATGTATTA
ACACGTTCGTTGCCGAGcctttttcagaaatcgaaatTTTGACATCTTTG
AGTTTCACCACAAATTTGGCTTCCAGAGACTCCTTTGGTCCTGACTTTTG
CTTCAAATGCCTTCTTCAAATTGgatacacgcttcttttttttataagaa
tacactttataagaatgtccatgatgaaaatggccaaaaaattaagaata
tggtaagaatattgCCATCATGGAATTAAGcaactgaagctaagaatgtc
atttttaatgtattttaacctgtagattgccaatttcgatcttaacctaa
gaataccgtaagaatatttttggatgattttcgccaaaaagtagttaaga
atattcatgatgaaatgaaaaaacaccattcttataaaaaaaagcgtgta
tccatCGACGCAGAAAAAGGTGCAAACAAAAGTttatgtatcaaaagtta
tggccctGTTGCTCTACTAGCCCACTctgaaaaatattaatgatGAACTA
TCAAGCGCTATTTGAAAAACCCTTCGAAATTCAGTGATTTCACGACTGGg
agaaaattgttgaaaaacaaCAGAGCCATTTATTTCAACCTTTCCttctt
attttattttgcaGGCGAGAAACCGTACAAATGTTGGCAGTGTGGGAAAT
CATTCTCACAGAGCGGTAGTTTACAAACACACGTCCATACTCACAGTAAA
GAACATTCCCTCAATAAAGGGAAAAAGAAATTAGCCCTTTGA Coding sequence (CDS) from alignment at sc0000042_pilon:1077613..1081454+ >XLOC_040923 ID=XLOC_040923|Name=XLOC_040923|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2664bp|location=Sequence derived from alignment at sc0000042_pilon:1077613..1081454+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGATGCCCCGCTCGTTCCTACTGAAGAATTATTACCCGCGGAACGATAT
GGAAGATATACAAGCAGCTGCAGATGATGCCCCGCTCGTTCCTACTGAAG
AATTATTACCCGCGGAACGATATGGAAGATATACAAGCAGCTGCAGCAAA
TCTTTTGGACCTTGCATCTTCTGCACCAGCTCCTAAAGAGAAGATAGTTC
ATGGTGTTTTGAGGTATAATGACCTCTTGAAGTGGAATTATGAGTATGAG
AAATCATATTGGTTTGATACTAGTGCCATGAATGAAAGAAACAACCCTTA
CCAACCTCACGAAGATGGCACTTCTTCTTCGCCCGCTTCTTCTAATGCGT
CTTGCTCCCCTCAAAGATATGGTGCAAGTACATCAGCAAATCTTTTGGAC
CTTGCATCTTCTGCACCAGCTCCTAAAGAGAAGATAGTTCATGGTGTTTT
GAGGTATAATGACCTCTTGAAGTGGAATTATGAGTATGAGAAATCATATT
GGTTTGATACTAGTGCCATGAATGAAAGAAACAACCCTTACCAACCTCAC
GAAGATGGCACTTCTTCTTCGCCCGCTTCTTCTAATGCGTCTTGCTCCCC
TCAAAGATATGGTGCAAGTACATCAGgTAGCAGCAGTAGTTGTGAGCTTT
CTCCCAAGGAAAGCGATCTCATTATTCCACGTGCTCTCGCTACCGGTGAT
TTTTCCACCAAAACATTCATGAACACAACCATTCAACCGGCAGCCGATGA
TTTTGTTGAGTCAGCACGAATTACAGAAAGCGATACTTTACAGACCGAAA
TGAAGGTACCCGAAGAGTTGAAAGTACCACCGAAATTGAACCCCGTCACA
CCACCTGTTATTACAACGACCCCTCCTGTTGCCACGACAACCACCATCAA
CACGTCAGCACTGACCGATGACAATGAAGATCATCTTTCAAGTTTGTTCG
AgTAGCAGCAGTAGTTGTGAGCTTTCTCCCAAGGAAAGCGATCTCATTAT
TCCACGTGCTCTCGCTACCGGTGATTTTTCCACCAAAACATTCATGAACA
CAACCATTCAACCGGCAGCCGATGATTTTGTTGAGTCAGCACGAATTACA
GAAAGCGATACTTTACAGACCGAAATGAAGGTACCCGAAGAGTTGAAAGT
ACCACCGAAATTGAACCCCGTCACACCACCTGTTATTACAACGACCCCTC
CTGTTGCCACGACAACCACCATCAACACGTCAGCACTGACCGATGACAAT
GAAGATCATCTTTCAAGTTTGTTCGAcaaaacaCTCGAAACAACGGAACA
AGCGATCAGACAATTTTTCGACAACAATCGACTCAATGCTGACGATATCT
CTGAAGATACAGGTCTCGATAAACTTAATCTCCAAAATTTCATGGATGGT
CTCACCGATCTTCCAGTGGATGATAAAACAGAACTTTATCGATGGTATTT
GAATAAAATGCAGAAATTAACCAATAAAGATACATTGGAAGCTAAAACTG
ATGAGAGCTACACCTGTCATAAATGTGGCAAAATTTTCACGTATAAAAGT
TACTTGGAACGCCATATTAAATATGTTTGTCCAGACAGTGCTGGTCGAAC
CTGGAAATGTACGTATTGTGGAAAAGCGTTTCAATACCCGTGCTATTTGA
GACGCCACATCCGGAGTCACACAGcaaaacaCTCGAAACAACGGAACAAG
CGATCAGACAATTTTTCGACAACAATCGACTCAATGCTGACGATATCTCT
GAAGATACAGGTCTCGATAAACTTAATCTCCAAAATTTCATGGATGGTCT
CACCGATCTTCCAGTGGATGATAAAACAGAACTTTATCGATGGTATTTGA
ATAAAATGCAGAAATTAACCAATAAAGATACATTGGAAGCTAAAACTGAT
GAGAGCTACACCTGTCATAAATGTGGCAAAATTTTCACGTATAAAAGTTA
CTTGGAACGCCATATTAAATATGTTTGTCCAGACAGTGCTGGTCGAACCT
GGAAATGTACGTATTGTGGAAAAGCGTTTCAATACCCGTGCTATTTGAGA
CGCCACATCCGGAGTCACACAGgtgaatCACCGTACAAGTGCGACAAATG
TGACCGCGCGTTTGTCCGTTCCACTGATCTACAACGCCACATACGTAACC
ATACGGGTGAAAAACCCTATAGATGCACGCAATGTTCACGAGCGTTCGCC
CGCTCAACAGATCTCAAAAGACATATGAGGACGCATACAGgtgaatCACC
GTACAAGTGCGACAAATGTGACCGCGCGTTTGTCCGTTCCACTGATCTAC
AACGCCACATACGTAACCATACGGGTGAAAAACCCTATAGATGCACGCAA
TGTTCACGAGCGTTCGCCCGCTCAACAGATCTCAAAAGACATATGAGGAC
GCATACAGGCGAGAAACCGTACAAATGTTGGCAGTGTGGGAAATCATTCT
CACAGAGCGGTAGTTTACAAACACACGTCCATACTCACAGTAAAGAACAT
TCCCTCAATAAAGGGAAAAAGAAATTAGCCCTTTGAGCGAGAAACCGTAC
AAATGTTGGCAGTGTGGGAAATCATTCTCACAGAGCGGTAGTTTACAAAC
ACACGTCCATACTCACAGTAAAGAACATTCCCTCAATAAAGGGAAAAAGA
AATTAGCCCTTTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000042_pilon | genome | sc0000042_pilon:1077613..1081454 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1207-1332:3717 |
| Aaloc | 1039-1203:2887 |
| Aaloc | 640-1035:1734 |
| Aaloc | 316-636:944 |
| Aaloc | 76-312:543 |
| Aaloc | 1-72:1 |
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