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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000141_pilon:103659..109103- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_040916 ID=XLOC_040916|Name=XLOC_040916|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5445bp|location=Sequence derived from alignment at sc0000141_pilon:103659..109103- (Clytia hemisphaerica_ch_hm2_pilon)
GGAAAAGCTTCCAAAACAACTTCAAAGGTAATGTACGTTTTTTTGGATGA
TTTTTTTATACTTATCTCCTGGTCAGCTTGGTTCAGATAACAGAATTTGC
TTTTGATAAAACTCAATTGTTCAAATAACGGTGAACCTTTTTATGTTTAT
TATGACTAGATGGTTGCAACGAAGACCTTACCTCTGGTGCTGGGGTCCCT
CTTGGGAATCATGCTGGCCATTCTGGTGGTCGTTTTGTTCTTGTTCTACA
AAAAGCGAAAGGAGAGCATCGAATTCAGCATACCGTTGGAGAAGATGACC
AGAGGGCTGAAAAGCTCTTTGAAAAGGAGATCAACTTCGTCGAAGAACAG
CAAAAGTAGTAACGACAGTATACACATCAAACCACAAGGAGTGAGTAGTG
ATTTGTTTTTAAATACCGTTTTATGATGGTATAGTCTCTTGGAAGTTCTT
TTCTTTTAAATCCTGAAGTTATTTTATGTATCAATGTTATGACGTTCTGT
AAAGTTTTTATCAAACTTTTGATTTTGAGCAACAAAACCTGAATCTAGGC
TTCTTCCACATCGACAATTTGCTGTGTTTCAAATTATTACAAACATTTCG
AGTAAACCCTTTCAATTGCCGAGCCGAACAGTGTTAGATGGGTAATATTA
ATGGTCTCGATTCTCTTAGAGATTTTGGATGAAAGTTTATAAAATAATAC
TCAACACAATTTGTTACAGACGCCAATTTTGAGGGACACTCAATTCTGGG
TACCGGAGGTATACAACTCCATCATCCAGCCCTCGTCCGCTGCTCCCATT
CGCAAAACGAGTCGATTGCAATCGACACTGGATCGAGAAATTTATTCGAA
AGCGCACGACACCTCTTACCTTCAAGCAGCTCAGCCTGAGGTTTGTAACA
TGATTTTTTCACTGGATAGTTCTATTGAAAAATTAGCATAAAATTCTGAA
AAACTTGAGGAAGCTTTTAAAATTTTAAATAAAGCAGTAATTTACTAGTC
ACACACAGCAAATTTTTTTTTTAAATCACCATGATACTTTTGGTGAATTT
ACCAGATTTCATTTTCACTCCTGTTTACTTAGGTTAAATTTCTGATACCT
TTGCAGGGGAGAATTTGCATGGTCAGGTTTTTCACTTTCACTTGGATTGG
TAAGATAATCTGGATCTAAAAAAAAAGTATATCGAAAAAAGAGATAGTGT
CCTGCAATAACCTTTCCCCTTTTACAAGGTTTTTGACGGTAAAAACGAGA
AACGACCTTCGACAATCTCCATGATGCGACGTAACACGTCATCGCTGAAA
CGTGGTGATATCGCGCGACGGTTAGCCAGTGAACAAGGCAGTCGTGGCAT
GCTTAACTTCTCAATACAATATAAACAAGCAACGTACGTATTTTGACTTA
CCCATTTCTGTGCTATGTGACTTTTTGGGCATACCGGATAAGTGGGATGG
GGGAACCTAAGTGGGAACCTAAATGAACACCGGAAAAGTGGGATATCCAT
TTCTGTGCTATGTGACTTGTTTTGTTTTTGTACCATGCTAAATACAGTCT
CTTTTTACATTTTTTATATCTTATGTCCCTTTAAGCCACCCAACTCGCCT
TTCTTTCAAATCAATTGATCAATTTTGAGTGACTCGGATTTTGAACTCGT
TGATTTTGACGGTTCGTCAAACTTTCAAGAATCTTTCTTGATGAATTACT
TAATTCTAGCCTTGTTTAGCCTTGTTAAACGAATATGAAGTTGATTTTGT
TTTTCATTTTTCTTTTTAGCGCCAAACTAACAATCATCATATTGAAAGCC
GAAGGATTGCCGGTTCGAAAAGACGGTGAGTTTTGTGATCCGTTTGTTGA
CATTCAAGTCAGTCCGTACTACAAGCGTCGAATGCATTCAGAAGTTCATC
AAAAAACTCAAAACCCTGTCTTCAACCAATCGTTTGATTCGGAGGTGCCG
CCATACGAGGTCCGTGGTCAAACGATACATTTCACCGTGTTAGATTTTAG
TCAGCAGTTAGCCCACGAACCGATTGGCTCAGTGGCTTTTAAGATGGACA
GTTTGGACAGGGATGCTTTCAACGCGGGCAAAGAATTCACACTGTGGAAG
AAAATTGATAAGGTAATGTAACTCAATTATAAGTCAAAAACTTTTACTGG
AAGAATGTCAGGGTTTTTAAGTTACCCGGCCTGCTAAAAAGCTCTTTTTC
GGATGACGAAATATCGGGGTATTTTTTTTGACATGACCTCTCTCAAAATT
TGATCACTTTCTCGAAATGGTAGACATTTGATTTCAATATATCAGCATCC
AATATAATGTTGAAATGAGTAAAAACATTACAGTGAGAGATATTACTGAA
GTCTTAAAATTGATCAGGAAGTTGGATAAGACTCAACAGCCTATATTATC
TATGCCAATATTTATGGCGAATAATAATGAACTCCAAAAGTTTATTTTAA
ATTCACATTAAACACAATGGAATACTTTTCTCCTTAATAATAGGATGCTT
TGGAATCAGGTGATCGACTAGACGGTAAACGCGAATACCCAATGGAAATG
GAGCTAGACAGGACAGCCATGTTGTTACTGCTCAGTGTCAATTATTTGAA
AATCGCCGAACGATTGACGGTGACGGTGAATAAAGCACGCAATCTACTAC
TGGTCGACCGCAAAGGCAAATTAGGTATGGAATTTCAACTTTCTATCGGG
AGAGTGCATTCGGACTCGTGAAAAGATCCTGACTTTTGGTTTAAAGGAGC
GGTGCTTAAGAAATGGTAGACATCGTTTACAAAGGTCAAAAACTAGAAGA
AGGGAGGGAGTTATGCATGTATGGCATGAAAACTAACAATCGTTTTAATC
GTTCACTTCCTTTCTTTTCATTTTCTCTTCCGGGGGCGGGTCAATGTACA
ATATAACAGGGTGCTCCATGTAATTTCGTTTTGTTTTTCTTTTTGTTTTT
TAATTCTGTTTTAGTTTTTGAGTAACGTCTTAAAAGTCAAATCAAGTATC
AAATAATTAAAAGCTTCTCTTTGGAAAGCATCTAGTCGTCGTCAAAATGA
AACGATTGTTGCAAACATACCTTTGTATTGTACACTCCGCCGTCCCGCGT
AAATAGTCTTAAAAATCAACTTGTTATTTCTAACCCGCTTTCACTTGTCC
ATGCATGCATTTTCACTCATATCGGCTTCTCTTTACTTTCCTTATAATTT
CATTTTCTAGCACGCCGATACACTATAATCTAACGTTATCATTATTGCAT
TACATTTTCATTCGTTCATATTAATGACAATACCATTATCTCGATTCATC
GAATGGTTTGCGGTGAACAACTCACGTGTGCGTTTGGGGCTGATTTGAAT
CCGGGTTTAGCGTTTGAAAAATGATTTATAAGTGTAATTGGCAAGGGCAT
TTAGACATTTTAGATACAGTCCTTTCTGAAATTATAATAATCATTTGCCA
GATATAACGTTAACCCCAATTAGGATGTTTCAATTTCTTTCCCGTAAATC
TTCAACTGTTTTGACTGTTAACGCGATTCGTTCAAAATCAACCACCAATG
CGCACATCGAGTTCACCATCAACCAAACCAGCCAACTTACTAACCTTAGG
GGAATAATCAGATGGTTGTTTAACATTTCTTGACTCGTAGAATCTTTGTA
TGATCCTGAACAAAACATCCAAATCGTTTGCCGAACTATTTTTCTAAGTC
GGAAAATAGATACAGTGGAGTCTCCATAACTCGAACGCTCAATTTAATTT
AATTTTCGGAAATTTAAAAATAAAGATTGGTCTATAAGGCATTGTTAACT
GAAGGGATCATGAAACTTGTTCGAGTTAAGAAGGCATTCGAGTTATAGAG
GTTCGAGTTGAAGGGATTCCACTGTACTAGCAAAAAGATGAGCGATTTTG
AAGTTTTCTCAGAACCATAAAAGGTTTTAACTGTTCAAAAATCTCAAACC
ATCTGATTATCCCTTTTAAACTTCTCTTCTCTTCTTTTACTAACCAGATG
GCATGTCATGCATAATCCCTCCTATTAGGACTCCTATTTCGAAACGGAAA
AAATCCCGCAAAAACGGGAAAATCGGGGAAATTGAACACGAAGATCTTGA
AAATAATAATGAGAATGGGAAACGAAGTGTACTGGGTAAGTGAAGCTGTA
GTGGTAAGATTGGAAAGAAGTGTGTTTTCACTGATAATAAGAGTGATTCG
GTAAGAGACGAAATGATGAATCTTCTTGCACTCGTTCGTTCGAATCAACA
CTTCTCAAAATACCTCATCATTCGAGTTTTTCTGTAATTTGTACAAACAG
TATTTCGTGTAAGAGCCCCTGTACGCACTGCTATGTTACAAAAGAATCGC
CGGTGCGGATTTGTACATGCTACTACTGTCTACTGTATTTGAGAAAGAGA
GAAATAAAGAGGGCCTAACATTTCAAGTGTTTCGGAACCCCGCATGAGGG
AACTGAATCAAGCAACAATGTTTTTGCCATTTGCTGCAATCTTACAGCGT
TTTTCAGCCTCAATTCGTTTAAAGTTCATAAATTGTCGAATGACCACTCT
AACTCTAAGTGAAAATGCATTTCTTTCTGAGTCTAAGAATTGTCCATTAC
CAGCTTTGTAAGGATCTTCTCTTTACAATGTAAAGGAAGACTAAAACACA
AACTGTAGACGATTTTAAGGCTCTATCTGCACTAAGCATCGTGCACAATT
TATCAATTAATATGGCTTCAAATTGGCTACACTTCACAGTTCATATAACT
TTAAGGGGAGAAACTTGCGCTGAAAGAAACGTTCGCGTATTTTTGCAAAA
GTGTATCTTCCCTTATAGTATTTAACGTGATCAAACGCTGGTATTAGTCT
GCTTTCTCGATACGCGAATGTCAACAATCTTTCTTCTCTTGCTTTTTCTT
TTTTCACGATCCCAGATTTTTACAGGTATTTCTAAATATAAAAATGACGC
AATCTTGACTTTCATATCGTGCATCATAAATACTTTCCCAGCTGGCACAC
AACATCGCTTCAACGTTCATCTAACGTTCTTTGGACGTTTTGACCGTTGT
CTTGATGTTTTGTACCAGTGGGGATTAGAATCATGCAAATTCAGATTTAA
TTTTGATTCTTATCTATTTCAGATCATCCGTACGTCCAAGTTACTCTAAA
GCATTTCGGACGCGTGCTCAAAAAATTACGGACAGGCGTGGTGAAACACG
AAACGAATCCTGTATTTAATAAGACTTTATTATTCGATGTTCCAAAGCAC
CTTGTAGACTCTGTATCACTGACAGTAAAATTACGTCATCATAACGAACT
TGGGCGTGACCGGACTTTTGCTATTTTAACGGTGGGTAAAAATGCGGTGG
GGTCCGGTTCGGAGCAATGGACGGATATGTTGAATTCATCGGAGACCGTA
CAACGCTGGCACCGTTTGATACCTATTGAACCGGTTGATGATTAA Coding sequence (CDS) from alignment at sc0000141_pilon:103659..109103- >XLOC_040916 ID=XLOC_040916|Name=XLOC_040916|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3138bp|location=Sequence derived from alignment at sc0000141_pilon:103659..109103- (Clytia hemisphaerica_ch_hm2_pilon)
GGAAAAGCTTCCAAAACAACTTCAAAGGGAAAAGCTTCCAAAACAACTTC
AAAGATGGTTGCAACGAAGACCTTACCTCTGGTGCTGGGGTCCCTCTTGG
GAATCATGCTGGCCATTCTGGTGGTCGTTTTGTTCTTGTTCTACAAAAAG
CGAAAGGAGAGCATCGAATTCAGCATACCGTTGGAGAAGATGACCAGAGG
GCTGAAAAGCTCTTTGAAAAGGAGATCAACTTCGTCGAAGAACAGCAAAA
GTAGTAACGACAGTATACACATCAAACCACAAGGAATGGTTGCAACGAAG
ACCTTACCTCTGGTGCTGGGGTCCCTCTTGGGAATCATGCTGGCCATTCT
GGTGGTCGTTTTGTTCTTGTTCTACAAAAAGCGAAAGGAGAGCATCGAAT
TCAGCATACCGTTGGAGAAGATGACCAGAGGGCTGAAAAGCTCTTTGAAA
AGGAGATCAACTTCGTCGAAGAACAGCAAAAGTAGTAACGACAGTATACA
CATCAAACCACAAGGAACGCCAATTTTGAGGGACACTCAATTCTGGGTAC
CGGAGGTATACAACTCCATCATCCAGCCCTCGTCCGCTGCTCCCATTCGC
AAAACGAGTCGATTGCAATCGACACTGGATCGAGAAATTTATTCGAAAGC
GCACGACACCTCTTACCTTCAAGCAGCTCAGCCTGAGACGCCAATTTTGA
GGGACACTCAATTCTGGGTACCGGAGGTATACAACTCCATCATCCAGCCC
TCGTCCGCTGCTCCCATTCGCAAAACGAGTCGATTGCAATCGACACTGGA
TCGAGAAATTTATTCGAAAGCGCACGACACCTCTTACCTTCAAGCAGCTC
AGCCTGAGGTTTTTGACGGTAAAAACGAGAAACGACCTTCGACAATCTCC
ATGATGCGACGTAACACGTCATCGCTGAAACGTGGTGATATCGCGCGACG
GTTAGCCAGTGAACAAGGCAGTCGTGGCATGCTTAACTTCTCAATACAAT
ATAAACAAGCAACGTTTTTGACGGTAAAAACGAGAAACGACCTTCGACAA
TCTCCATGATGCGACGTAACACGTCATCGCTGAAACGTGGTGATATCGCG
CGACGGTTAGCCAGTGAACAAGGCAGTCGTGGCATGCTTAACTTCTCAAT
ACAATATAAACAAGCAACCGCCAAACTAACAATCATCATATTGAAAGCCG
AAGGATTGCCGGTTCGAAAAGACGGTGAGTTTTGTGATCCGTTTGTTGAC
ATTCAAGTCAGTCCGTACTACAAGCGTCGAATGCATTCAGAAGTTCATCA
AAAAACTCAAAACCCTGTCTTCAACCAATCGTTTGATTCGGAGGTGCCGC
CATACGAGGTCCGTGGTCAAACGATACATTTCACCGTGTTAGATTTTAGT
CAGCAGTTAGCCCACGAACCGATTGGCTCAGTGGCTTTTAAGATGGACAG
TTTGGACAGGGATGCTTTCAACGCGGGCAAAGAATTCACACTGTGGAAGA
AAATTGATAAGCGCCAAACTAACAATCATCATATTGAAAGCCGAAGGATT
GCCGGTTCGAAAAGACGGTGAGTTTTGTGATCCGTTTGTTGACATTCAAG
TCAGTCCGTACTACAAGCGTCGAATGCATTCAGAAGTTCATCAAAAAACT
CAAAACCCTGTCTTCAACCAATCGTTTGATTCGGAGGTGCCGCCATACGA
GGTCCGTGGTCAAACGATACATTTCACCGTGTTAGATTTTAGTCAGCAGT
TAGCCCACGAACCGATTGGCTCAGTGGCTTTTAAGATGGACAGTTTGGAC
AGGGATGCTTTCAACGCGGGCAAAGAATTCACACTGTGGAAGAAAATTGA
TAAGGATGCTTTGGAATCAGGTGATCGACTAGACGGTAAACGCGAATACC
CAATGGAAATGGAGCTAGACAGGACAGCCATGTTGTTACTGCTCAGTGTC
AATTATTTGAAAATCGCCGAACGATTGACGGTGACGGTGAATAAAGCACG
CAATCTACTACTGGTCGACCGCAAAGGCAAATTAGGATGCTTTGGAATCA
GGTGATCGACTAGACGGTAAACGCGAATACCCAATGGAAATGGAGCTAGA
CAGGACAGCCATGTTGTTACTGCTCAGTGTCAATTATTTGAAAATCGCCG
AACGATTGACGGTGACGGTGAATAAAGCACGCAATCTACTACTGGTCGAC
CGCAAAGGCAAATTAGATGGCATGTCATGCATAATCCCTCCTATTAGGAC
TCCTATTTCGAAACGGAAAAAATCCCGCAAAAACGGGAAAATCGGGGAAA
TTGAACACGAAGATCTTGAAAATAATAATGAGAATGGGAAACGAAGTGTA
CTGGATGGCATGTCATGCATAATCCCTCCTATTAGGACTCCTATTTCGAA
ACGGAAAAAATCCCGCAAAAACGGGAAAATCGGGGAAATTGAACACGAAG
ATCTTGAAAATAATAATGAGAATGGGAAACGAAGTGTACTGGATCATCCG
TACGTCCAAGTTACTCTAAAGCATTTCGGACGCGTGCTCAAAAAATTACG
GACAGGCGTGGTGAAACACGAAACGAATCCTGTATTTAATAAGACTTTAT
TATTCGATGTTCCAAAGCACCTTGTAGACTCTGTATCACTGACAGTAAAA
TTACGTCATCATAACGAACTTGGGCGTGACCGGACTTTTGCTATTTTAAC
GGTGGGTAAAAATGCGGTGGGGTCCGGTTCGGAGCAATGGACGGATATGT
TGAATTCATCGGAGACCGTACAACGCTGGCACCGTTTGATACCTATTGAA
CCGGTTGATGATTAAATCATCCGTACGTCCAAGTTACTCTAAAGCATTTC
GGACGCGTGCTCAAAAAATTACGGACAGGCGTGGTGAAACACGAAACGAA
TCCTGTATTTAATAAGACTTTATTATTCGATGTTCCAAAGCACCTTGTAG
ACTCTGTATCACTGACAGTAAAATTACGTCATCATAACGAACTTGGGCGT
GACCGGACTTTTGCTATTTTAACGGTGGGTAAAAATGCGGTGGGGTCCGG
TTCGGAGCAATGGACGGATATGTTGAATTCATCGGAGACCGTACAACGCT
GGCACCGTTTGATACCTATTGAACCGGTTGATGATTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000141_pilon | genome | sc0000141_pilon:103659..109103 - |
Properties
| Property Name | Value |
|---|
| Aaloc | 1249-1569:322 |
| Aaloc | 1111-1245:1447 |
| Aaloc | 928-1107:2953 |
| Aaloc | 586-927:3676 |
| Aaloc | 430-582:4218 |
| Aaloc | 259-429:4727 |
| Aaloc | 28-258:5287 |
| Aaloc | 1-27:5446 |
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