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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000163_pilon:327200..330681+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_040878 ID=XLOC_040878|Name=XLOC_040878|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3482bp|location=Sequence derived from alignment at sc0000163_pilon:327200..330681+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTTGGAGTTAAAAGTCGTGAGCAATTCACGTTAAAATGGCAACTCAA
ATTCATTGCTATGATTTGTTTTACTGGTTTgctatttttaatgaaaataa
ccGTTGGCCAGGTTACAAAATCTATGGCTTTAGTTGCTGATAGTTTTCAC
ATGATTACCGATTTCGCTGCTCTTACTATTGGTTATATTGCATTAAAATG
TGCGAATTCAAAGACTGGCACAAGTCAAGTGCTTTTAAGTCGTTTTACGT
TTGGTTGGGTCCGAGCTGAGGTCCTTGGTGGTCTTATCAATACAGttttt
ttACTAGCCCTTTGTTTTTCTGTTATGGTACATTCATTAAAACGGTTTAT
TACACCGGAACACATATCTAAACCGATTCCAGTTTTGATAGTTGGTGGTG
TGAGTTTATTGGTGAATCTTTTGGGCTTAATGATGTTTCGTACCACCCGA
GAGAATTGTTTGTCCATTTGTAGTAGTTGTTTTAAGAGCCATGATAAAAC
ACCTGAAGTTGAAGGCATCTCTTTGATGAATGGACAACAAACAGCTAAAG
GTATATATTCTTCTTGATTCAAAATTCTAAGAACCAATCAATCAATGAGC
CTTGGTAACtctttttttttcgtgattcCCAGCATTTTATAATAAGATCT
TTTGAGTTTTGAGCATCGTGTTTTTATGGGGGAAACTGTTCTTACAAGAA
GTGTATTACGGCCCAAGCTTTGATTTCTCTTCGTGAAAATATAGTATTTG
TTGATCTCAGTTCGTAAAAGcgtatttttataattttttcattttcttta
attgCCGAAATAGATTGTTCTAACGCGTTCTGTCAAATTCTcacatttta
aactttttctgttaaggccggtctccacttgcgcgcgctgcgatcgcatt
ggaaaaaaggttacgtcataaaaatgtagtgcgcgctcgaaaaaaaagtt
gaacacatttcaacttttttaaaccgTTACGTCAAATTGCACCAAtggaa
ttgtttcatttttcttttgaccaatagcgtggaagctttgctcgaaaaag
tgcgatcgcagagCGCGCCAGTGGAGACGGGCATTTACACGTGTAACCAC
GGATGTTTCTTTTGACAACCACGAACTATCGCGTTTTATTGATTtctagt
tttttcattttcatctcttACAGCACGTAAACGCACGTATTCACACTCAC
GTGGTCACGAAGTGTCATGGGAACACGAATACCAAACACCACATTCGCTA
AACATACGCGGTGTATATCTACACATACTTGAACATTTTCTTATCTCCAT
CATTGTTATTATGTCTGCTCTCCTTATGTTACACTACGAAGGAGAAACAT
GGATTGATTATGTAGATCCTGCTTTCACTCTCCTAGTGGTGGCTACCATT
TTGTACTCCACCGTACCGCTTTTTCGTGAAACTTTGATCCTTTTCATGCA
ATCGGTACCGGCTAATATACAAGTAAAAGACATGGAAGAGAGACTGTTGA
AACACATACCGGAAATTTTGTCCGTTCATGAACTCCATGTGTGGCAACTT
GGAGGTGATAAGGTTGTAGGTAAGTTTGACATATTTCAGCTGCCTCTTTG
TGATACTTCCATCAACCCTTAGCTGCGCTTTCTGGTTTTAAGGGGACAGG
TAGTGAATTTACAAAGAAATGACCTCtgaattctttttctttgagaATGT
TAATTCAACGACTTTACACATTTTGATGTCATTCCTCCCTGGTAAACTCG
AGCCCAGTCTTCAAAGGTTGATAGAACGATTTATACGAATCGGTACATTT
TGAGAACATTCTGAATTCTTTcagtttttgaatttcattttcatttctct
CCGTTATTCTTCATTTAGGGAATAGCTAgatttttccttatatttttaGC
CTACAGAATAAAAAGCTTTTGAAGGCTTTGAGCTAAAAAATTTGTACCAA
AACACAATACGGTTCTTTCGGAAAATGAGTGGCCCGATTGGTATCATATG
TATTTCTagtatttcaaatcaaatattaaaggttttgtttttaaataaga
gtgatatcgtttgcttgctcatcaattttaatttacaagccttttcgcat
tggattgacacgtatgtgaagcaagatttgtcagaaagaggaaaatgaaa
atattttttgcttatgtcagccagggatatgttatagcggagctggataa
cgcaaatttaaaaaagccttgttctatgtctgtccctgacattaaaattt
gatatgaaatttaacttttataattacaaactcgtgaaatttggatttcc
tcttagccaatgattctgctgctgcatttatcgttcacgattaaaaactt
ttaattatcaagagggtctgtaaaacattggtgaatgacaattttaaaaa
atgaaaaacattgttttcgtaaagttataagaagtttcttctctaagatt
ataaatagtactttttcatttgaaataccgcgctacaccgcgggttgcct
ctttctaactgatattttcagatagcaagtcggtatgtctgattatggaa
aaaatttcaagtcaattgaaacaatatttgtcaaaatatttacatccgaa
atttttaaagagaaatcatgaaagcttctcaaattcataacacacgctga
taaaaatagatttcatttacaaggaagcttttggggtatcttctacaaat
attattttgatgaaaagcgggaacatcatagcaaaatatgtgcaaacgta
ctgcatgaatactttgtctgctacatttttcttataaaaacagaacactc
aaggggacagagatggatttctattatgaacagtttacaatagaaaagac
aaagaagcaatccgctaaggaattctcgtccttcatccagctccgctata
acatatccctgtgtcagcataatataacaaaaggcatacactgttctgat
atgaaatatgtgcctCATAACGGGAACACTTTAAAATCTCTACTATAATA
ATACTTGGGAGGTTTTTATCTTCTCTTCGGTGAGTGCTAGATAATTTAAT
AGAGTTGACTAAAATATTATTTCGTACTTAAGAGTTTCATGGCGCCTCCG
CCTCAGAGTGAATCTCTCAATAATAATGCAACACCTTTCTGTTTCAGCAT
CTGCACATCTCCTCTTCAAACGTCCTGAGGATTTCCGAAAAACTGTCAAC
TCCGTTAAATCGTTTTTCCGCCGTGAAGGAATCGCTTGTATGACGTTCCA
GCCTGAATTTCTACCTGAAGAAGATGTTGATGGAGAACAGGCTGCTGACG
CCATGGTGATGTTTAGCCCGGACCGATGTTACTTCAAATGTGCAAAGAAA
GATTGTCAGACATTGACATGCTGTGATGTTTCAGATGATAAAGATAGCAT
CACCAATACTGATTCTTCTCCTTCAAGTTCAGAATGTACTTTTTCACCAG
ATAGAACTTCATTGACATTACTTATGTCTTAA Coding sequence (CDS) from alignment at sc0000163_pilon:327200..330681+ >XLOC_040878 ID=XLOC_040878|Name=XLOC_040878|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2562bp|location=Sequence derived from alignment at sc0000163_pilon:327200..330681+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTTGGAGTTAAAAGTCGTGAGCAATTCACGTTAAAATGGCAACTCAA
ATTCATTGCTATGATTTGTTTTACTGGTTTgctatttttaatgaaaataa
ccGTTGGCCAGGTTACAAAATCTATGGCTTTAGTTGCTGATAGTTTTCAC
ATGATTACCGATTTCGCTGCTCTTACTATTGGTTATATTGCATTAAAATG
TGCGAATTCAAAGACTGGCACAAGTCAAGTGCTTTTAAGTCGTTTTACGT
TTGGTTGGGTCCGAGCTGAGGTCCTTGGTGGTCTTATCAATACAGttttt
ttACTAGCCCTTTGTTTTTCTGTTATGGTACATTCATTAAAACGGTTTAT
TACACCGGAACACATATCTAAACCGATTCCAGTTTTGATAGTTGGTGGTG
TGAGTTTATTGGTGAATCTTTTGGGCTTAATGATGTTTCGTACCACCCGA
GAGAATTGTTTGTCCATTTGTAGTAGTTGTTTTAAGAGCCATGATAAAAC
ACCTGAAGTTGAAGGCATCTCTTTGATGAATGGACAACAAACAGCTAAAG
ATGTTTGGAGTTAAAAGTCGTGAGCAATTCACGTTAAAATGGCAACTCAA
ATTCATTGCTATGATTTGTTTTACTGGTTTgctatttttaatgaaaataa
ccGTTGGCCAGGTTACAAAATCTATGGCTTTAGTTGCTGATAGTTTTCAC
ATGATTACCGATTTCGCTGCTCTTACTATTGGTTATATTGCATTAAAATG
TGCGAATTCAAAGACTGGCACAAGTCAAGTGCTTTTAAGTCGTTTTACGT
TTGGTTGGGTCCGAGCTGAGGTCCTTGGTGGTCTTATCAATACAGttttt
ttACTAGCCCTTTGTTTTTCTGTTATGGTACATTCATTAAAACGGTTTAT
TACACCGGAACACATATCTAAACCGATTCCAGTTTTGATAGTTGGTGGTG
TGAGTTTATTGGTGAATCTTTTGGGCTTAATGATGTTTCGTACCACCCGA
GAGAATTGTTTGTCCATTTGTAGTAGTTGTTTTAAGAGCCATGATAAAAC
ACCTGAAGTTGAAGGCATCTCTTTGATGAATGGACAACAAACAGCTAAAG
CACGTAAACGCACGTATTCACACTCACGTGGTCACGAAGTGTCATGGGAA
CACGAATACCAAACACCACATTCGCTAAACATACGCGGTGTATATCTACA
CATACTTGAACATTTTCTTATCTCCATCATTGTTATTATGTCTGCTCTCC
TTATGTTACACTACGAAGGAGAAACATGGATTGATTATGTAGATCCTGCT
TTCACTCTCCTAGTGGTGGCTACCATTTTGTACTCCACCGTACCGCTTTT
TCGTGAAACTTTGATCCTTTTCATGCAATCGGTACCGGCTAATATACAAG
TAAAAGACATGGAAGAGAGACTGTTGAAACACATACCGGAAATTTTGTCC
GTTCATGAACTCCATGTGTGGCAACTTGGAGGTGATAAGGTTGTAGCACG
TAAACGCACGTATTCACACTCACGTGGTCACGAAGTGTCATGGGAACACG
AATACCAAACACCACATTCGCTAAACATACGCGGTGTATATCTACACATA
CTTGAACATTTTCTTATCTCCATCATTGTTATTATGTCTGCTCTCCTTAT
GTTACACTACGAAGGAGAAACATGGATTGATTATGTAGATCCTGCTTTCA
CTCTCCTAGTGGTGGCTACCATTTTGTACTCCACCGTACCGCTTTTTCGT
GAAACTTTGATCCTTTTCATGCAATCGGTACCGGCTAATATACAAGTAAA
AGACATGGAAGAGAGACTGTTGAAACACATACCGGAAATTTTGTCCGTTC
ATGAACTCCATGTGTGGCAACTTGGAGGTGATAAGGTTGTAGCATCTGCA
CATCTCCTCTTCAAACGTCCTGAGGATTTCCGAAAAACTGTCAACTCCGT
TAAATCGTTTTTCCGCCGTGAAGGAATCGCTTGTATGACGTTCCAGCCTG
AATTTCTACCTGAAGAAGATGTTGATGGAGAACAGGCTGCTGACGCCATG
GTGATGTTTAGCCCGGACCGATGTTACTTCAAATGTGCAAAGAAAGATTG
TCAGACATTGACATGCTGTGATGTTTCAGATGATAAAGATAGCATCACCA
ATACTGATTCTTCTCCTTCAAGTTCAGAATGTACTTTTTCACCAGATAGA
ACTTCATTGACATTACTTATGTCTTAACATCTGCACATCTCCTCTTCAAA
CGTCCTGAGGATTTCCGAAAAACTGTCAACTCCGTTAAATCGTTTTTCCG
CCGTGAAGGAATCGCTTGTATGACGTTCCAGCCTGAATTTCTACCTGAAG
AAGATGTTGATGGAGAACAGGCTGCTGACGCCATGGTGATGTTTAGCCCG
GACCGATGTTACTTCAAATGTGCAAAGAAAGATTGTCAGACATTGACATG
CTGTGATGTTTCAGATGATAAAGATAGCATCACCAATACTGATTCTTCTC
CTTCAAGTTCAGAATGTACTTTTTCACCAGATAGAACTTCATTGACATTA
CTTATGTCTTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000163_pilon | genome | sc0000163_pilon:327200..330681 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 949-1281:3150 |
| Aaloc | 553-945:1176 |
| Aaloc | 1-549:1 |
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