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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000081_pilon:1047102..1051117- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_040875 ID=XLOC_040875|Name=XLOC_040875|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4016bp|location=Sequence derived from alignment at sc0000081_pilon:1047102..1051117- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAGAAAAAGCTGTTAACGTCTCTACGAGCTTTCTGGAAGAATTATGT
CTTTAATAGCATGTACACTATATTCATAGTATCTCTATTATCTCCACAAT
ATGAGGCAACATCTTCACTTCAGCAAGCCAAATATGCGTCATGCTCAAAT
GATAATTTCTATCTCCGAAAGTTCGAAAAAGTTGGCATTATAATTCACTA
TCATAAAACTGAGATAGTCAATGACCCTGTGACAGATTGGAAAAAGTGTT
TTCAACGATGTCGACTATTGAATTGTGTTATTTTCACCGTTTGGAAGATT
GCTTTGGACAATACTTTCACATGTCGATACTTTTTTACTGTACGCAACAG
GTAAATGTTTCTTCTTCTGCCCAAAAAACATGGTTCTTGTCATTTTTTGC
ACCCTTGGTGTAAAACTAAGAACAAATAAAAATTTTAGCCTGAAATGAAC
CATTGAAGTCTTTAGAAAAGGTGAAAAATAAAAAAAAGGCGAAATTAAAG
TCAAAAGTTTTCTTATAAGATTAAGTAAAATTTGAGCTCAGCTAATAATG
TATCTTTTTTTAGACTTCATCCTTGCGCACGCATTTCCACACTTTCAAAC
TTCCAAATGACCTTTGTTCGAACAGAGTGCAACCCTTCTACTAACCCGAA
AACACAATTTGTGCCGGTGACATACGATGAAGCATCGACCTGCAACGATA
TACTTCAGACTGGTCAAACTAAATCAGGTTCCTTTAATTGTTTATTTCTC
AACCTTTTTTATTTCTCATGTTCAAGATAATGAAGAAATTTCTTTTACCG
ATTTGAACACTTGTTGTAAAAAATTACCCCGCACCTTAAACAAAAAGATC
TTATTTTAAAAGCGAATAAATTTTCTCTCGACTACAAATCTAAGAGGGGC
CCCCCCTAAGATATGATCATCTCGATTTTCTCCTTTTTAAGTCCCTCTCT
CATTGTCGTGGTGCAATCAACCAATAAGATTCAATCTTGAAAATTGACTT
TTATTTTGTCTCCATTTGAAATTAAGAAGAAATTGCACTCCAAAACCAAC
ACCCACTGGATATTTTGACCTGAGGATTTTATTCCTATTAGAATTTCTAT
AAAAACTTTTATCCCAATGCGGTTTGATATTTTACCGGGGCTTAGAGACA
GGGGTGTACTTGTCGTTTCGTAATTTTCACCAAAGATATTGGGCCATTCC
ATTTTATATCCATACAGAAGGGTGGACGAACACTTCCAGAGGGTAATCTG
AGAAACATTTTCCAGGAGGTGTTTTTTCATTTTTCCAAGGGAGTGAAAAG
TTATTCTAAAATTTCCAGGGGCAAAAGACACCCTCAATTTAAGGTATGAA
AAGAATTTATTTCCAATGGTGTTTTTGCACATTTTGCCATTTTTAAGAGG
GTATCCACACAATAATTCTTTTTTGACTTGAAAAGGTTCGTGCAGCCCCT
GTATGGGTTTTTAATGGAACAGCCAATTGTATGTATCAGCCTTTTTAACT
TTATTTACACACCCAGGAATCTACCAAGTTGGCATATTTGATAAGTTATA
CGACGGTGAAAGTTACCAATACGTTTTATGTGAAATGAATGAAGAGGAAT
TCGGTGCCGGTTGGACAGTCATTCAAAGAAATTATGAAGCTGAAGATCGA
ACGAATTTCTGGGGAAGTTATCAAAAGTAACAACTCTTTTATCCACTTAG
TCTATACCCAAGGCTATAAGCTATTTTGCGATATAGATGGTGCTTATATA
TCTGCTTATTTCCTTTCCTCATTTTAAAGGTGAAATCAGAAAAAGATGTT
AGCAATCAAAGGCGCTTTTTGCGCTTCTCTTATTCTCTCAGTGCCCCTTA
AAATTCGGCCGCTGGAGGGGGGGGGGCAGTTCCCCCTTTAATCCCATATC
ACCACACTACTGGTACCTACGGTAACTCCTAATAAGGTGCAAACCTTACT
TTTTCTATGAAACTTTTCATCATTGAATATCTATATTAATCTTCGATATG
AAGTTTCATCATCTTCCGTGACTTCATCAGCCAAGAGCTTATAACTAGCA
GTCGCTTCATTTTTTGTTTCTATGTTAATCCTCTCTTAAGGTACAAGCAT
GGCTTTGGGCATTTGCAATCATCCTTTTGGATTGGTCTGGAAACAATGTA
TGAAATGACCAAACACAAAGACCAAGAACTCCTTATTGTGCTTCAAGTAG
GATCAACAATTAAAAGAGCAGTCTTCGATACCTTCTACGTTGGTAATGAA
ACCGAAGGCTACAAGTAAGTTCAAAAGGACCGTTTTGATGTTTTTTTTTT
TCGATTGTGAATCTAAATATTAAGCTTAAAACCCAGAACAAGTTCTGAAT
CCCAATCTAAATTGCAAAACACTCCACAGTATCTAAAAAATCACATGAGA
AATATACCCTGAAATTTCACACAATTTGAATTAGAAATGTTCCTCATTGG
TAGAAACGCCGAAATATTGCTCATCCAAATCTCATTAACCTGTAAACATA
ATTTCTCAAAGAAAACCAATCCCTCTTTTATTTTTTCCTTCTGGCTACAC
ATTCGTGTTTATTCATCTATGGTTAAGGACTCAAAGAACTGTTCGCCGAC
ATAATACACTTTTTTCTCAATTCTTTAGGTTGAACATTGGTGGCTATTCA
CAAACAGACTCAACAATGGCTGACAGTAATACAACAGACACTGTATTCGC
TGAATTCCATAATGGCTTCCCTTTCACAGTTCCAGAGGCAAGTATCTCAA
ACAAAAAGTGCTCATAATCTCCTTATACATGTACCCACGGGGGAGGGGGG
GTACTAGGGTTGCGGGCTGACGGGGGGTGGGGTTGCCACCCGACTTTCAA
CCCTCGGACCCTTACCGGGACTAAAAATGAGAAAACAAAGAAAAATTTTG
TGAATTTTACGACCTTTACCGGGACAATTTTGACCAAATTTCTCCTACCC
TTAGTGGGACTGAAATTTGATTTTCTGATTTTCCGACCCTTAGCGGGACT
TTGGAAATCCAAAAAAGGTACCCTTATGGGCGGAACATACTGTACCCTCT
ATTTGCCTAAGTACCAAGCTCCCCCCAACCACGGGTACGTGCATTTGAAG
TAAAGAAATATGTTTTCGTAAATGTTTTTATGAGTATCAATATAGAAGAA
CTTGAAAAATAACTGGAGGATCCCTTTTGAGGTTATCTGAGATCATCAGG
GAAAAAGCGCGTTAAGTAGAAAGAAGACGGCTTCGTTAGTTTTTTTGTTG
ACGAAATATCGCCTGAAAATTCATAGCCCGTGGTCCACTTAGGGCTTTTT
GATAGACTGGTTGGCGTGATTAAGTGGTAGTCTATGGCATAGTGCGGAAA
GGGGTCTGACCCCCCCTTCTTAAATGATCCCCCCCTTCTTGATATCCCCC
CCCCAACCTTTAAAAAACCTATCCCCCAAGGTTTTCGGGCTAAATTTTTT
ATGGTAAAAAGGGAAGGGAAACAGTAAAGAAAAATTAAATCTGGCAAATA
TATACCACTTTTTAGTGAAAATAAAGAACTCTTCCTTTCATACAGACCAA
ATTTCATAACAGTGCTGGAAAATAATCTACAATATATGTAAGCCCCCCCT
TTTTAAACAATCCCCCCCTCCTTGCTATCCCCCCCCTTTTTAGTGAAAAT
TTCTGATCCTCCCCCCCTTCTTCACTTTTTTGGAAGGTGTCATCCCCCCC
TTAAGAAAGGGGGGGGGGGTTCGAACTATGTATGATAGTTTCAAATTTTG
AGTTTTTGCTTAGGTGGACTGTAAAACAACATGCTTAGTTTCCTTTATCT
ATTCAGGTTGATGGTACTAATTGCGCTACAGCTTCTAAAGCTGGTTGGTG
GTTTAATCCTAACCCCAGTGATTGTTTCAGAGTATTCCTGAATGGACAAC
CAGATCTCAATATGTGCAGTCAAACAGCAAATGCTCATAAAAGTTTGATA
TGGAATTGGGCATCGACTACTTGCTTTGACCAATCAACAATGATGATCAG
AAAAAGAAAATATTGA Coding sequence (CDS) from alignment at sc0000081_pilon:1047102..1051117- >XLOC_040875 ID=XLOC_040875|Name=XLOC_040875|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2334bp|location=Sequence derived from alignment at sc0000081_pilon:1047102..1051117- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAGAAAAAGCTGTTAACGTCTCTACGAGCTTTCTGGAAGAATTATGT
CTTTAATAGCATGTACACTATATTCATAGTATCTCTATTATCTCCACAAT
ATGAGGCAACATCTTCACTTCAGCAAGCCAAATATGCGTCATGCTCAAAT
GATAATTTCTATCTCCGAAAGTTCGAAAAAGTTGGCATTATAATTCACTA
TCATAAAACTGAGATAGTCAATGACCCTGTGACAGATTGGAAAAAGTGTT
TTCAACGATGTCGACTATTGAATTGTGTTATTTTCACCGTTTGGAAGATT
GCTTTGGACAATACTTTCACATGTCGATACTTTTTTACTGTACGCAACAG
ATGGAGAAAAAGCTGTTAACGTCTCTACGAGCTTTCTGGAAGAATTATGT
CTTTAATAGCATGTACACTATATTCATAGTATCTCTATTATCTCCACAAT
ATGAGGCAACATCTTCACTTCAGCAAGCCAAATATGCGTCATGCTCAAAT
GATAATTTCTATCTCCGAAAGTTCGAAAAAGTTGGCATTATAATTCACTA
TCATAAAACTGAGATAGTCAATGACCCTGTGACAGATTGGAAAAAGTGTT
TTCAACGATGTCGACTATTGAATTGTGTTATTTTCACCGTTTGGAAGATT
GCTTTGGACAATACTTTCACATGTCGATACTTTTTTACTGTACGCAACAG
ACTTCATCCTTGCGCACGCATTTCCACACTTTCAAACTTCCAAATGACCT
TTGTTCGAACAGAGTGCAACCCTTCTACTAACCCGAAAACACAATTTGTG
CCGGTGACATACGATGAAGCATCGACCTGCAACGATATACTTCAGACTGG
TCAAACTAAATCAGACTTCATCCTTGCGCACGCATTTCCACACTTTCAAA
CTTCCAAATGACCTTTGTTCGAACAGAGTGCAACCCTTCTACTAACCCGA
AAACACAATTTGTGCCGGTGACATACGATGAAGCATCGACCTGCAACGAT
ATACTTCAGACTGGTCAAACTAAATCAGGAATCTACCAAGTTGGCATATT
TGATAAGTTATACGACGGTGAAAGTTACCAATACGTTTTATGTGAAATGA
ATGAAGAGGAATTCGGTGCCGGTTGGACAGTCATTCAAAGAAATTATGAA
GCTGAAGATCGAACGAATTTCTGGGGAAGTTATCAAAAGAATCTACCAAG
TTGGCATATTTGATAAGTTATACGACGGTGAAAGTTACCAATACGTTTTA
TGTGAAATGAATGAAGAGGAATTCGGTGCCGGTTGGACAGTCATTCAAAG
AAATTATGAAGCTGAAGATCGAACGAATTTCTGGGGAAGTTATCAAAAGT
ACAAGCATGGCTTTGGGCATTTGCAATCATCCTTTTGGATTGGTCTGGAA
ACAATGTATGAAATGACCAAACACAAAGACCAAGAACTCCTTATTGTGCT
TCAAGTAGGATCAACAATTAAAAGAGCAGTCTTCGATACCTTCTACGTTG
GTAATGAAACCGAAGGCTACAAGTACAAGCATGGCTTTGGGCATTTGCAA
TCATCCTTTTGGATTGGTCTGGAAACAATGTATGAAATGACCAAACACAA
AGACCAAGAACTCCTTATTGTGCTTCAAGTAGGATCAACAATTAAAAGAG
CAGTCTTCGATACCTTCTACGTTGGTAATGAAACCGAAGGCTACAAGTTG
AACATTGGTGGCTATTCACAAACAGACTCAACAATGGCTGACAGTAATAC
AACAGACACTGTATTCGCTGAATTCCATAATGGCTTCCCTTTCACAGTTC
CAGAGGTTGAACATTGGTGGCTATTCACAAACAGACTCAACAATGGCTGA
CAGTAATACAACAGACACTGTATTCGCTGAATTCCATAATGGCTTCCCTT
TCACAGTTCCAGAGGTTGATGGTACTAATTGCGCTACAGCTTCTAAAGCT
GGTTGGTGGTTTAATCCTAACCCCAGTGATTGTTTCAGAGTATTCCTGAA
TGGACAACCAGATCTCAATATGTGCAGTCAAACAGCAAATGCTCATAAAA
GTTTGATATGGAATTGGGCATCGACTACTTGCTTTGACCAATCAACAATG
ATGATCAGAAAAAGAAAATATTGAGTTGATGGTACTAATTGCGCTACAGC
TTCTAAAGCTGGTTGGTGGTTTAATCCTAACCCCAGTGATTGTTTCAGAG
TATTCCTGAATGGACAACCAGATCTCAATATGTGCAGTCAAACAGCAAAT
GCTCATAAAAGTTTGATATGGAATTGGGCATCGACTACTTGCTTTGACCA
ATCAACAATGATGATCAGAAAAAGAAAATATTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000081_pilon | genome | sc0000081_pilon:1047102..1051117 - |
Properties
| Property Name | Value |
|---|
| Aaloc | 958-1167:211 |
| Aaloc | 850-957:1388 |
| Aaloc | 676-846:1926 |
| Aaloc | 517-672:2499 |
| Aaloc | 352-513:3453 |
| Aaloc | 1-348:4017 |
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