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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000034_pilon:1164770..1167614+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_040674 ID=XLOC_040674|Name=XLOC_040674|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2845bp|location=Sequence derived from alignment at sc0000034_pilon:1164770..1167614+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAACAATACGCAATATCAAATCGATGCTGGTGAAACTTTGAATCTGAC
TTTGATCATGAGTGGCAACCCTCAACCTAACGTGACATTTAAGCTTGAAG
ATGAGCAGCTCAATGTTTTAGTAACagagatttcaaaattaaatcgcACG
TATAAGTATGAAGTACTAAGAGTCATTTCAACTGGAGATTGCGGAAAGAA
TTTGTCATTTACAGCTTCTAATGAATATGGAACTATTCACCAGCATACTG
TCCTTGCTGTCGATTGTGAGTATGTTTTACTAAAATTCCTCATTCTAGAG
GCTTCAATTCCATACACTTCGCGAAGAACAGACTTTCATAATCATAATAT
AAATGCAAGTTTAGTTAGAGTCGATGAGTCAGTATACAGCTATTGTTATT
TTCCTTGTAATTTTAGTCGATCCGAAAGCGACGAACCTAACGGCAAAACT
AGAAGAGGAATGTTTGAGGGTGAATTATACTCTGGTCGACCCAGGATTAT
GCAATGTGACGTTTACACTACGATTGCTTGAAGATACAAACACCACACGT
GCATTTGTTGTGAACCAAGATGTTACGCAATCAGAAAGTATGGACGCACC
AATGGAAAAAGATGAAGAAGACGCAGAAAAATCTTTATCTTTAAACAGAC
ATTCGAAAGCCACGCCAATGGTCCAACCTATCGAAGCAGAATCGATCAGT
CAAATAACCTCAATATCTCAAACAATATCAGATAAGTCTATACAACCAAC
ATCATCATACGGAGAGTTGTcaacaatatcaacaacagttttacaaccaa
ctacagacaacacgacacaacaaaacGTATTAAAATCATTTCAACTCAGT
TACAACACAACAACATATGTGTACTGTTTTGACAATGATACAATACTTGA
TAAATTCAAAAACTCATTGACAATCTCTATCCTTGGACAGTATGGAAATA
AAACCTCACTATCTGCCACAACCAAAGCAGTACGAATTTTAACACCTGCT
CCTACAACCAATCCAAATACCTCCCCAGCCCCTaacacgaccacagcaac
aacaacaacaacgacagcaacgacgagatcacccaacaacaacaccacaa
ccacaccacgaccacaaaatacaaccatccaaccaacaacaGCCGAAAAG
AATACAACGCGAAGTCCATCAGTCACAACGACCAAACCTAAGGACTCAGG
TATTAGATAATCATGGTATCTTTCAAAGCCGTTCGCTATACTTAAGAAAA
GTCTTATTTgcttttcaattcaaaagtggactgtttttattcttcctttt
tgaccttttcaatattttcgatttttgattacttcgatcttatcagttag
ggtcagggctGGAGCTCGAAACATTGCGTCATTATTTAGATGATCTGTAA
AGTGTAGAAGAGGCTTTCTGGGGGATATTGTATACTCTTCGGAATAGGAA
CTTTCTTCCCCTCATATCCAAATTTATTATTGTAGATTTTAAAGGTTGTG
TGTTGGTTGGAGAGCAAAGAAATCAATGTTAAAGCCTGATTCAAAACATT
TAAGTCTATTTAATacctttcataaaaaaaatcatttaatgtctcaaggg
acacaatcaccatggtaattgtttgaatacgaggcaagtgatgttcgtga
cgtaattcatgaaaaggtctatttaataCCTTTCAGACGAAGAAGACACT
TGTGATGATGACAAGAAAAAGTTGGTGATCGCCATGTTTGGTGGAATCAT
GGGTGCTGTGGCTGTCATCGCTTTGATCGTCATCATGCTTTCTATCTGTA
AAGATCAAGGTATTGAGAATGAGATGAAGAAGTGGAAAAACAACTATATT
CTTCTACtgactttttcttttacttCCAAAAGTCTTGGAATCCTTTATCT
GGCACTCgatgtaaaaattttttctcacacgttaaagctctgaaggacga
gaaaattttcaacatctggaaggtttggattgtaaaattttgggaaaatt
ttgcaagaccgcgtcaatgattttgcagattttgcACCATCCCATTCCCA
AAAATACTTCTGCATCCTATGACTCAGCTGGAAAACCTTTCACCTCTCAG
GTGACTATCAACTCCCAAATCTACTTGGTCtatttagagctttagcgtgg
gtggTCACCCAATCCACCATTTGAATATcagatatttgatatttgatcAC
CATTTGAATATTAGATATTTGATTCTTAAAAGACGAAGACAAGACGTCTA
GAGAAATATTTTCGTTAAACTTTTGCACTTTCGCTCAAATTTAAGTAAGG
TGGTTAATTATGGAAATTAACAATGTTTTCGGGGGAAACACTCTCTTaat
aattttattatttcagaCAAAGAAGTGGAGGAATGGGACCGAGAGTACTT
GGAAGAACAAGGTGCTCTCCCTAAGAGAAAAAGAGTCCATGATTTCACTA
AAGAAAGCTTTGGAGAAGGCAAGTCAAGTCCAGCGAGGAGGAGACACAGT
GATGAAAAGAAATCGAAGAAAAACCATGGTTTTGAAGATAGCTGTACGAT
CGAGACAAATTTCGGTGGTAATTTCAGCAAAACAAGAGGCGGGAAAATCA
AGAAGGTGGAAAAGACCGGAGAAGCTGCAGAAAGCGTAGGAAAGAGACCT
GGTACCAAGGAGACTGGAACGAGTTTCAATGTTGGTGATTTCACCGTCGG
CGGGAAAACGATCCCGAAATTGATCACTGTTACTGAAGTAGATTCACAGG
AGAATTTGAAGAATGTTATTGTCATGAAAGAGAAGAAGGGTGGGAGTGTC
AGTGGGTCTGCTACTAGTTCAAATATCTCAACTATTGTTCTTTAG Coding sequence (CDS) from alignment at sc0000034_pilon:1164770..1167614+ >XLOC_040674 ID=XLOC_040674|Name=XLOC_040674|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3300bp|location=Sequence derived from alignment at sc0000034_pilon:1164770..1167614+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAACAATACGCAATATCAAATCGATGCTGGTGAAACTTTGAATCTGAC
TTTGATCATGAGTGGCAACCCTCAACCTAACGTGACATTTAAGCTTGAAG
ATGAGCAGCTCAATGTTTTAGTAACagagatttcaaaattaaatcgcACG
TATAAGTATGAAGTACTAAGAGTCATTTCAACTGGAGATTGCGGAAAGAA
TTTGTCATTTACAGCTTCTAATGAATATGGAACTATTCACCAGCATACTG
TCCTTGCTGTCGATTATGAACAATACGCAATATCAAATCGATGCTGGTGA
AACTTTGAATCTGACTTTGATCATGAGTGGCAACCCTCAACCTAACGTGA
CATTTAAGCTTGAAGATGAGCAGCTCAATGTTTTAGTAACagagatttca
aaattaaatcgcACGTATAAGTATGAAGTACTAAGAGTCATTTCAACTGG
AGATTGCGGAAAGAATTTGTCATTTACAGCTTCTAATGAATATGGAACTA
TTCACCAGCATACTGTCCTTGCTGTCGATTTCGATCCGAAAGCGACGAAC
CTAACGGCAAAACTAGAAGAGGAATGTTTGAGGGTGAATTATACTCTGGT
CGACCCAGGATTATGCAATGTGACGTTTACACTACGATTGCTTGAAGATA
CAAACACCACACGTGCATTTGTTGTGAACCAAGATGTTACGCAATCAGAA
AGTATGGACGCACCAATGGAAAAAGATGAAGAAGACGCAGAAAAATCTTT
ATCTTTAAACAGACATTCGAAAGCCACGCCAATGGTCCAACCTATCGAAG
CAGAATCGATCAGTCAAATAACCTCAATATCTCAAACAATATCAGATAAG
TCTATACAACCAACATCATCATACGGAGAGTTGTcaacaatatcaacaac
agttttacaaccaactacagacaacacgacacaacaaaacGTATTAAAAT
CATTTCAACTCAGTTACAACACAACAACATATGTGTACTGTTTTGACAAT
GATACAATACTTGATAAATTCAAAAACTCATTGACAATCTCTATCCTTGG
ACAGTATGGAAATAAAACCTCACTATCTGCCACAACCAAAGCAGTACGAA
TTTTAACACCTGCTCCTACAACCAATCCAAATACCTCCCCAGCCCCTaac
acgaccacagcaacaacaacaacaacgacagcaacgacgagatcacccaa
caacaacaccacaaccacaccacgaccacaaaatacaaccatccaaccaa
caacaGCCGAAAAGAATACAACGCGAAGTCCATCAGTCACAACGACCAAA
CCTAAGGACTCAGTCGATCCGAAAGCGACGAACCTAACGGCAAAACTAGA
AGAGGAATGTTTGAGGGTGAATTATACTCTGGTCGACCCAGGATTATGCA
ATGTGACGTTTACACTACGATTGCTTGAAGATACAAACACCACACGTGCA
TTTGTTGTGAACCAAGATGTTACGCAATCAGAAAGTATGGACGCACCAAT
GGAAAAAGATGAAGAAGACGCAGAAAAATCTTTATCTTTAAACAGACATT
CGAAAGCCACGCCAATGGTCCAACCTATCGAAGCAGAATCGATCAGTCAA
ATAACCTCAATATCTCAAACAATATCAGATAAGTCTATACAACCAACATC
ATCATACGGAGAGTTGTcaacaatatcaacaacagttttacaaccaacta
cagacaacacgacacaacaaaacGTATTAAAATCATTTCAACTCAGTTAC
AACACAACAACATATGTGTACTGTTTTGACAATGATACAATACTTGATAA
ATTCAAAAACTCATTGACAATCTCTATCCTTGGACAGTATGGAAATAAAA
CCTCACTATCTGCCACAACCAAAGCAGTACGAATTTTAACACCTGCTCCT
ACAACCAATCCAAATACCTCCCCAGCCCCTaacacgaccacagcaacaac
aacaacaacgacagcaacgacgagatcacccaacaacaacaccacaacca
caccacgaccacaaaatacaaccatccaaccaacaacaGCCGAAAAGAAT
ACAACGCGAAGTCCATCAGTCACAACGACCAAACCTAAGGACTCAGACGA
AGAAGACACTTGTGATGATGACAAGAAAAAGTTGGTGATCGCCATGTTTG
GTGGAATCATGGGTGCTGTGGCTGTCATCGCTTTGATCGTCATCATGCTT
TCTATCTGTAAAGATCAAGACGAAGAAGACACTTGTGATGATGACAAGAA
AAAGTTGGTGATCGCCATGTTTGGTGGAATCATGGGTGCTGTGGCTGTCA
TCGCTTTGATCGTCATCATGCTTTCTATCTGTAAAGATCAAGaCAAAGAA
GTGGAGGAATGGGACCGAGAGTACTTGGAAGAACAAGGTGCTCTCCCTAA
GAGAAAAAGAGTCCATGATTTCACTAAAGAAAGCTTTGGAGAAGGCAAGT
CAAGTCCAGCGAGGAGGAGACACAGTGATGAAAAGAAATCGAAGAAAAAC
CATGGTTTTGAAGATAGCTGTACGATCGAGACAAATTTCGGTGGTAATTT
CAGCAAAACAAGAGGCGGGAAAATCAAGAAGGTGGAAAAGACCGGAGAAG
CTGCAGAAAGCGTAGGAAAGAGACCTGGTACCAAGGAGACTGGAACGAGT
TTCAATGTTGGTGATTTCACCGTCGGCGGGAAAACGATCCCGAAATTGAT
CACTGTTACTGAAGTAGATTCACAGGAGAATTTGAAGAATGTTATTGTCA
TGAAAGAGAAGAAGGGTGGGAGTGTCAGTGGGTCTGCTACTAGTTCAAAT
ATCTCAACTATTGTTCTTTAGaCAAAGAAGTGGAGGAATGGGACCGAGAG
TACTTGGAAGAACAAGGTGCTCTCCCTAAGAGAAAAAGAGTCCATGATTT
CACTAAAGAAAGCTTTGGAGAAGGCAAGTCAAGTCCAGCGAGGAGGAGAC
ACAGTGATGAAAAGAAATCGAAGAAAAACCATGGTTTTGAAGATAGCTGT
ACGATCGAGACAAATTTCGGTGGTAATTTCAGCAAAACAAGAGGCGGGAA
AATCAAGAAGGTGGAAAAGACCGGAGAAGCTGCAGAAAGCGTAGGAAAGA
GACCTGGTACCAAGGAGACTGGAACGAGTTTCAATGTTGGTGATTTCACC
GTCGGCGGGAAAACGATCCCGAAATTGATCACTGTTACTGAAGTAGATTC
ACAGGAGAATTTGAAGAATGTTATTGTCATGAAAGAGAAGAAGGGTGGGA
GTGTCAGTGGGTCTGCTACTAGTTCAAATATCTCAACTATTGTTCTTTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000034_pilon | genome | sc0000034_pilon:1164770..1167614 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1174-1650:2369 |
| Aaloc | 1051-1170:1689 |
| Aaloc | 268-1047:419 |
| Aaloc | 1-264:1 |
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