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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000029_pilon:1546859..1551296+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_040583 ID=XLOC_040583|Name=XLOC_040583|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4438bp|location=Sequence derived from alignment at sc0000029_pilon:1546859..1551296+ (Clytia hemisphaerica_ch_hm2_pilon)
TTTGAAGattcgaaaataaaaacatacggCTCTATAATGGATTTGACTCA
AGTTTTCAATGTTCTTGTAATGTTGTGGATGGCTAAAGCAAGATCAATCA
TTTCTAAggtaagaagaaagaaaaacatgttgTGAAAATATATATCAACC
CTCTTTTTACCGTACGGCAATTGAATGGTGATGATGGTGGCGTCATAGAT
TTCtgtaaagtccgaagggctagatgccATGCTTtatggggggcgtacgg
gggtcACCAACaccaaaatctttctttaacAGTCAAACACCGTATGGCAT
GTTTAACAACGAAAAACAATCTTTTTTCCTTCAAACATCGAAACACCGGT
AGAAAATAGGGTCATTTCATGAATCTATTGTTTTCCAAGCTTCGACGGGG
CTAGATCCAAAACTCCAGCAGGATAGGAAATGAAGCCTCTTAGCCCCTTT
CAGAACACGTGGACCCGTGTTTTTtccaacaaaatttctaaatgcggGGA
AAAcctaaggcttcactttttcttgcttgagaaataTTGATGATTCATCT
CTAGCCCTTTCGGGGCTTCAAAATCAATGTAAgaatcttgaaaaaaagtc
agctacatttttttataaaggcAAGTAAACTTTTGTTAAGGCTCGGTGGT
GGttattttattgatattttgagCCTCATATTGTACCTTgtcctgttttt
atttttaggacattgaggtattttaggcctTTTTCCTGATTTCTAATACT
TTGCCCTTAAATACACGggctgcaaaattatatcaatacagtcaaaacat
gtgattactcgaaaaagttcacttGATTTTAATCCCATGTtattgcttta
caacttacagctgattaCTCTATTAgtatcaataaattcgaaccaatcag
aaataaatgtcatgtaacaaacacataaaaatttcgagtaaaaacgTGAT
TTGTCTccagactttaattttgaaacctgtatgttaaagtctattcacga
taagtgtgcactcttttttcttttacctataacttttgaaggaattcttc
aatctttataaatttggtatcatctgaaagatattagtgagtggaacaat
ttgaaataaaaaaatatttaaaaaaattctaaaaatgaaaatgaaaatga
aaaagaaaaaaaatgaagatctagtaggaaagtgctataactacacgttt
ttttttattagaacctagtttataagaacatataggctgaaattcgtcga
aaaattaagaacatcttaagaacatgcccagcctcagtttggaaaaaaat
gacaagaaactacaattttttcctctttttaagcagttttaaccgaattt
aggggtggatcttcaaaagtcgagagtcaaatactgtacaaattttgcca
aattaaagtgctctttattttgtatcgtattatcgatttagagtagtctg
agaaattaagaacgcatttaagaacattttaggctgaaaattgctaaaaa
aaataagcacatccaggctcagccaaattttaggtttaggctgattgacg
tctaaaaacgctgttttctgctgttttttgctgtttttttggggtcaatc
acttatcaactttatatcataactttatattgaataaatattttaatgaa
accttttcacagtgataacctcctaagatcaaagaatctcttgagtgaaa
atgaaagttatagcacttctctacaagatcttcatttttttcttcttcat
tttcatcttcatttttagaatttttttaaatatttttttatttcaaattg
ttccattcactaatatctttcagatgataccaaatttataaaaattgaag
aattccttcaaaagttataggtaaaagaaaaaagagtgcacacttatcgt
gaatagactttaattgaTGTAATTCAATGCAAGGCTCAGCATTGggtttg
atttttcttattatttgatgattttgagcctcgttgttcttataaaatct
ttataaaagtgtttattttttaggaCTACTCTTTTATTGGCATCGGAGAT
TCTCAACCAACCATACCAGTTCAAGAAAAGGTATTTCATAatagttaagg
aaatttcgagttatcaAGAGTAAGGTGTATAAGGCAttttttggccagcg
aagccttatgttcttatatagtttgttcgtataaaaaataacggttataa
ggcattgttaactgaagggactgTTCGAGTTGGGGAGAcactcgagttat
agaggttcgagttgaaGAAACTCCATTGTACTAAGATACTAATGCATCTT
TTTGTTTCTATTTCAGTTACacgaattttgtaaaaataaaccaAAGATTT
GCAAGGACATCATTATGAATAGCAGTCGAAATAAAAAAGAGACAGTTGAC
ACAAACACCCAATTATCAGTTCAAGAAAAGGTATTTCATAATAACACATG
GCTCATTTCTGGCTAAAAACTAAGAACACATATGAACACACTATGATCCA
GGTCACGAAATTTACAATAAGCTTGAATAATACTGATTTGAGCTTTTAAT
GGGCTAATCCACTTTAAATCTGTTAAATCTTAATTGATGCAGGCCCATGA
TATATACGTACATGATTACTAATTAGGGGTGGAATAAATATACTATCCCT
GTTTACGCAGGCTTCATTTTTACcgtgaagatttttttttttaccttttt
tactCTAATGTCTTCTGAGATAACTCAGATCTTCCTGATAGAAAACTTTT
ATCACCAATAAAGATTTTCTGAAGCATTCCTTGTGTATGCAAAAAATGAC
TTCGTTGGAGTCTTCATGAACCGAACATGCATGGGGAACACAAttttttt
CGAGCTAAGGAACCTCTTCGAGTTAAGGACTAAGGTGTGTCatggagaaa
gagtggcaccatAGGTTAGATATCTATCGAAAGAGAAGCCGCGGTCGCAG
ATTTACTTATAGGGCATTGTCAAGGCCGATCTCCACTTTCACGCGAACTG
AGCGAAAATTctttaacgtttttgtaaggtcattggtcagTTTAGCCTAT
ACTTCTATCctatctttttgtttctttttcagttATACGAATTTTGTAAG
AATAAACCAAAGATTTGCAAGGACATCATTATGAACAGCAGTCGAAATAA
AAAAGAGACGGATGACACAAACACCCAATTATCGGAGAATGAATTTTTCT
CGGACAAATTTCGGACAGTAAAAGATGTCGAAAAAGAAGATCAGCTTTTT
ACTCAAAATGAGGCAGatgaaattattcaaaatgtaAGGATATCTATATA
ATGACAGCCTTACGTGtctaaagcttttgttttttttttgcagctttttt
ttcgctagcgattttagcGAGGCTTTTTATTAGGGGGTATAAAGCAACAT
GTTTCTGCctgttttattaaaaatatgAATAGTCGAATCCCCAGCTAATG
AAACAGAGAAAGCCGTCTTTGACGGCGTCTATacaattttttcagccagt
gggggtaaaaataacgaactgaaacacaatgaggattgatattcccacat
cttttatggctggggatttaaattctattgttttcaagttagaaacttca
gtggggattggaaaaacagcataatattttgcagtatgggttagtttatt
tgattattttcactgGGGACAAAAACTGGGGatgattttccaccggggac
catagtttggccaatttttccagtggggaatAGGGCTTacagtgggtctg
tgaaaagggggtgaATAATACTATACAGAGTGCTTCAttgattattttct
ttcaaTGATATTATGAtcattttaaggcaaaataaGTAAGGCAAAATTGG
actaaaaagatattttgaacatttttaacaGGTCTTTGAGATATTGGGTT
ATTGCATACATAATCGGAGTGAATGCCCTTTATTGGCTAGCCATGAACCC
ATATATAACGACCAAGAGTTTAAAAGAGCGAAAATCAATGAGCAAAGCGT
CAAGTCTGTGGTAAGTATCTTTGTTGGGTGACGACTTTTATACATTAGAG
TCTCCTTAACTTATtaactcgattttttctttACCTCGGATAAGTGTTTA
ATCAAAATCCATTAAGTTCCACTGGCTTCATACAAAATAGGTCTTCACCT
AGGAACACCTTACCGTCCGAATTTAAAACTAAGTCGGGATTGTCAATTTA
GTTGGGGtgcatttgaaagaaaaaattataatcgaaatgaaaatttttca
attgacCTAGCTATGAAGATTTAACTCTTAATTTCGATTTCTCTGAACTG
CTACCATACTGCTAAAACTGTTAATTGATagccccccttttttatttata
aattttctatattttttagcCGGAGATTTTAGGCAAATGGTGCGCAGACC
TTCCAAAGGAATGTGCCAAAGCGTTAAAATTCGGCTAA Coding sequence (CDS) from alignment at sc0000029_pilon:1546859..1551296+ >XLOC_040583 ID=XLOC_040583|Name=XLOC_040583|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1356bp|location=Sequence derived from alignment at sc0000029_pilon:1546859..1551296+ (Clytia hemisphaerica_ch_hm2_pilon)
TTTGAAGattcgaaaataaaaacatacggCTCTATAATGGATTTGACTCA
AGTTTTCAATGTTCTTGTAATGTTGTGGATGGCTAAAGCAAGATCAATCA
TTTCTAAgTTTGAAGattcgaaaataaaaacatacggCTCTATAATGGAT
TTGACTCAAGTTTTCAATGTTCTTGTAATGTTGTGGATGGCTAAAGCAAG
ATCAATCATTTCTAAggaCTACTCTTTTATTGGCATCGGAGATTCTCAAC
CAACCATACCAGTTCAAGAAAAGgaCTACTCTTTTATTGGCATCGGAGAT
TCTCAACCAACCATACCAGTTCAAGAAAAGTTACacgaattttgtaaaaa
taaaccaAAGATTTGCAAGGACATCATTATGAATAGCAGTCGAAATAAAA
AAGAGACAGTTGACACAAACACCCAATTATCAGTTCAAGAAAAGTTACac
gaattttgtaaaaataaaccaAAGATTTGCAAGGACATCATTATGAATAG
CAGTCGAAATAAAAAAGAGACAGTTGACACAAACACCCAATTATCAGTTC
AAGAAAAGttATACGAATTTTGTAAGAATAAACCAAAGATTTGCAAGGAC
ATCATTATGAACAGCAGTCGAAATAAAAAAGAGACGGATGACACAAACAC
CCAATTATCGGAGAATGAATTTTTCTCGGACAAATTTCGGACAGTAAAAG
ATGTCGAAAAAGAAGATCAGCTTTTTACTCAAAATGAGGCAGatgaaatt
attcaaaatttATACGAATTTTGTAAGAATAAACCAAAGATTTGCAAGGA
CATCATTATGAACAGCAGTCGAAATAAAAAAGAGACGGATGACACAAACA
CCCAATTATCGGAGAATGAATTTTTCTCGGACAAATTTCGGACAGTAAAA
GATGTCGAAAAAGAAGATCAGCTTTTTACTCAAAATGAGGCAGatgaaat
tattcaaaatGTCTTTGAGATATTGGGTTATTGCATACATAATCGGAGTG
AATGCCCTTTATTGGCTAGCCATGAACCCATATATAACGACCAAGAGTTT
AAAAGAGCGAAAATCAATGAGCAAAGCGTCAAGTCTGTGGTCTTTGAGAT
ATTGGGTTATTGCATACATAATCGGAGTGAATGCCCTTTATTGGCTAGCC
ATGAACCCATATATAACGACCAAGAGTTTAAAAGAGCGAAAATCAATGAG
CAAAGCGTCAAGTCTGTGcCGGAGATTTTAGGCAAATGGTGCGCAGACCT
TCCAAAGGAATGTGCCAAAGCGTTAAAATTCGGCTAAcCGGAGATTTTAG
GCAAATGGTGCGCAGACCTTCCAAAGGAATGTGCCAAAGCGTTAAAATTC
GGCTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000029_pilon | genome | sc0000029_pilon:1546859..1551296 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 610-678:4370 |
| Aaloc | 481-609:3882 |
| Aaloc | 280-480:3083 |
| Aaloc | 166-279:2317 |
| Aaloc | 109-165:2024 |
| Aaloc | 1-108:1 |
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