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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000006_pilon:3036413..3040572+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_040404 ID=XLOC_040404|Name=XLOC_040404|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4160bp|location=Sequence derived from alignment at sc0000006_pilon:3036413..3040572+ (Clytia hemisphaerica_ch_hm2_pilon)
ATTGTTGTAATAGTTTGGAAGATGAAATCTCAAGAATTGGctaattattt
tgttgttatttcATTCAACGTTAATTTCATTGTGGCTGCATATTTAACAA
GGCGTAAGTAACATGATCGCTGGTCAGGATCCCTTTTTTAgactctgaag
atatctgacagggtctcaaatttactaattttcaaaacGTGTATCTGATA
CCttaatttttcacaattttcagggtggaaatttagaaaatcttcaattt
ttctttctgacagggtcccaaatttgccaaatattcatatctaacagggt
ccatttttcaaactccagcggcacgtccccgtccaccgtcaaggtcagtg
ccccctccccccgggcTCGATGCTAAGTTCACTAAAAGTGTAGCTTTTTT
ATCACTATACTGTTATAAAGACCCATTACACTCGCCAAGCATCGGACTTT
TAAAACTGACCATCTTTATATTATTTCCTTCACAGCTCCCTTAACGGCGT
CACCAGGCACCTGTCAAATCACTATCGACACTGGCAGATCATCAAGAGAA
TATCGATTCCAAGAGCAACTCGTACTTTCCCATTGCGTATACTGTGATTG
CTTACCAGGAAACATTGCCTCGTGTTTCAAGACAGATATAAACGATACCA
AGTCTACACTTTGCTTAGATTGCAACATAATATCTTCTAGGGACGTAGCC
TGCTCTTATTGTTGGCATCCACTTTGGTCTAAAGACTTCTCAATATTTAA
TATAAGTAGACTAGGTGAAGAAATTGAGGTGTCAGAATTTGATTGCGCAA
CATGCACATGTTCTAGACGTGGAACTGTCTATTGTATATACCTTCAACAG
CGCTGTTACAGTGTATCAAATTGCGTACAGATGTTTAAGACGCTGAAAAA
CGAAACTCTGGCTACTGACAAGAAATGTAGAAAATGTCTTTTTGATGGTG
ATAAGAAAGATCGTTTAGCTCGTTGGAATATCAATTACGATACTCTTTCC
ATTCCTTGTCGATGTGAGGATTCTGGTGAAAGTGTTTGTGAAATATCGGC
AACACCAACCATGTGGCttccttttaaaaaaatatgtcgaAATTGTACAA
CAACTTCTTTGGTCaaaaaaaCGTTCGTTACAAAAGGTAATTCTTTTAGA
TTTTCTCATAAGTGTTTGATTATCCACCTTAGAACAATTTTCTCACTTAC
CTACAATCTGTGACTAGATATTGTGGCAAGGATTCCCTTCCCCACtagta
tcaatgttgatgggtgAAAAGGCTGCCACCATGCTCAGAAAAAGCTATAC
ATCAACACTGATATTAGGGGGgaagagatttttcaagaaattgtcacata
ttttgtcactgattgtaggtAAAACCTTCAATATCCTATGAAGTACGAAC
CATGGGTGTAGGAATTTTATGTTAAGCTTTAACAAATGTATGCGCACGAA
ATTTCTCTGTTGATTCGACAATTTGTCATTTCGTCTTTTTCTTGAAGATT
GTTCAATTGGAGGTGTGAATCTTATCCATAATTCTTGgcagtttatttcg
aaagactCTACATACCATTGTTTTcaatgtgcttgttacatgggTCAATT
GAAATGTTTAATGCCGGACAGAAAAGTGGAAATATATCATTGTGTTGGTA
AAGATTGTTTGGAAGAATATGAAAGTCTATCAACTTCAATAAGTAAGGCT
CAATCTACACTACACAATATTTTCAGCCAATATATTGATAGTATATTCCT
gaatgccggcaatatattgaaaagatgtccacaatatattgtcagctcga
tttgcaatattccaataATATAGAGGgattgtttacaaaaagaaattttt
ttataatagagcacatgttgtttacttcgtacattaccgTCCGAAATCTA
TATTGTTGAATATTGctcaccaatatattgtgtaaGTCTAAGTTAAGTAG
CCCttaagttaaaaacatttcttcAGAATCGTAACTAACTTATCGACCCT
ATTTACGCCGGCTCTTGGTGATGTCATAGGGGTAATAGGGCCGGCGTTAT
GGATCGAAATTAAATGGGTCTAATAGGATTTTGACTATGGTCAAGTAGGA
CAATGTTAAGCGTTGTCTTTTTTACCTTTCTTGTAGGATGTTCTCTTCCA
GTACATCAAAACAAATGCCCACCAGGCTATCTGTTCAGTTGGTCAAACCA
AGTTTGTAATATCACTTGTATCCACGGGTCAAAAATGTTCAAcgtaataa
aagaaaaatggtgcACAAATTTAGGATTGTCAGATCCCTGTGAAAAATGT
CCAGGTAAGAGAATAATAAACTCTGGATGAGCAGAAAGAAAGCTAGGAAG
CCTGTAGCCTTTACACACCTTCTTACAAATTATTCCCTTTTAAAGAACAC
CATCTAAACTCCAAACATTTACGCCTACACAGCATTTTTTATCGAAAACG
AGAACAATTTCCTCTCGGTCCATGCGAGCACTAATTTTGAGAAATTGTAT
TGTTTTGACAGCATAACAGGGACACTTCCTTTCTATACAATCTGTCGTCA
TAACGGCGcattctaggcgcgttctggatggaaattaagtggcttcacag
aggttagagattctactctaccccttcgggctttaaattcAATGGTGAAC
ACCTCAACAAATTTTCTGTTCTAGATAAGAAATCATTTCTTGAAGCGAAT
AAGAACCACGTTTTGATATGCCATAATTCATCACTATACATATGGAAAGA
TCAAATTTGTGATACAAGGAAAGATTGCCCTGATGgcaaagatgaagaaa
attgcgaaaaatgtaattcaagattttttaacgTTGAAAATGCCAGAGAA
TTGGCCAGAATCCAtcgtctttcagaattgttgAGTTTTGAGATTTACAT
TTTATCAATTTGAATTTATTATGAATTTAGCCTCTTTCTCTTTACACCCG
GtttctttatatttcttttggACGTTTATGGGAAAAAATCAACCTTTTAT
TTCAGATTATTGCAGATTTGGAGAAGATAAGGCTGGAATATTTTGGAACC
CAACTGAAGTTGATACTACTGTCTCTAGAGAATGTAGTTCACTCGTGTCA
GACTCTGCTTTAAAAGGTGAAGTATACGTTATACATTACCTATCAATCCT
TTCACCAAAGGCTGAAAGATGACGACTCCAAAACAgatgtaaatgcatcg
agagcgctagatctacttttcttTACAGACCGaaaaaaaCTGATACCAGT
GACACTTAACGGGTTAAGGTGAATCCATTGGTCTGAAACATTGTATCTGC
TGTTTGTAGGTCTGAGTTTAGCCGATGTTATCGTCCATTACAAGTtagta
aaaatggaaaaataaataaatgtaaatACACGAAGTTTATAGCCGTAATG
GCGGTaacttttttcgtcaaaaatcccgtttgcgaattttcttcggctta
tGGATTATTTCTTAGCTAGTGATTtttcttagactatagcatggTCTAGG
CTACAGGCTAACATTCAAACCGATTTGTCTGAACAGTCATTATTTTTTAC
AGGTCAATTCACAAGAAGTTGTATTTATTCACCTCAAAATGAGACTATAT
GGACAAAAGCAAATTATTGTGATTGTAATAGAATAAATTTTCCAGTATTT
GATAACGTAAGTGCTTAGAGGACACAGCCTAATGTATCAATTGATGGCTA
ACTTCAGATCTATTTTCCATTTCCTCACGGTTACAATCAGAAGGTTAGCT
AGAGGATCTGGCTCTGACCTTTTTTGTGAATTACAAAGGTTTTCTTCCCA
AGGTTTTTGGGTTTAAACTTACATAGAACAGTAGAAATTGAAACAGTTGA
GATTTCGTCCACAGGAAAGAAACATGTGAACCTTAACCAAAGGAAAATAA
CGTTCAAATTGTACAGATAAATGAAAGGGTTgctgtttttaaaatatttt
tgccctTTAATCTCGCTTATCTACTTATATCGTGTGATTGTTTTACCATC
TTGATAATCTTAGCCTGGAAATCTGACTTGCAACAAACAAAGCCTTGATT
ACATGATACGCTCCATCACGAAGTTACGATTTCATGCCTGGCAATCAACA
AATAAACGCTTGCACGATATCGAGGCTAAGAAAATCTTAAACGTTTTATA
TGATATATGT Coding sequence (CDS) from alignment at sc0000006_pilon:3036413..3040572+ >XLOC_040404 ID=XLOC_040404|Name=XLOC_040404|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3234bp|location=Sequence derived from alignment at sc0000006_pilon:3036413..3040572+ (Clytia hemisphaerica_ch_hm2_pilon)
ATTGTTGTAATAGTTTGGAAGATGAAATCTCAAGAATTGGctaattattt
tgttgttatttcATTCAACGTTAATTTCATTGTGGCTGCATATTTAACAA
GGCATTGTTGTAATAGTTTGGAAGATGAAATCTCAAGAATTGGctaatta
ttttgttgttatttcATTCAACGTTAATTTCATTGTGGCTGCATATTTAA
CAAGGCCTCCCTTAACGGCGTCACCAGGCACCTGTCAAATCACTATCGAC
ACTGGCAGATCATCAAGAGAATATCGATTCCAAGAGCAACTCGTACTTTC
CCATTGCGTATACTGTGATTGCTTACCAGGAAACATTGCCTCGTGTTTCA
AGACAGATATAAACGATACCAAGTCTACACTTTGCTTAGATTGCAACATA
ATATCTTCTAGGGACGTAGCCTGCTCTTATTGTTGGCATCCACTTTGGTC
TAAAGACTTCTCAATATTTAATATAAGTAGACTAGGTGAAGAAATTGAGG
TGTCAGAATTTGATTGCGCAACATGCACATGTTCTAGACGTGGAACTGTC
TATTGTATATACCTTCAACAGCGCTGTTACAGTGTATCAAATTGCGTACA
GATGTTTAAGACGCTGAAAAACGAAACTCTGGCTACTGACAAGAAATGTA
GAAAATGTCTTTTTGATGGTGATAAGAAAGATCGTTTAGCTCGTTGGAAT
ATCAATTACGATACTCTTTCCATTCCTTGTCGATGTGAGGATTCTGGTGA
AAGTGTTTGTGAAATATCGGCAACACCAACCATGTGGCttccttttaaaa
aaatatgtcgaAATTGTACAACAACTTCTTTGGTCaaaaaaaCGTTCGTT
ACAAAAGCTCCCTTAACGGCGTCACCAGGCACCTGTCAAATCACTATCGA
CACTGGCAGATCATCAAGAGAATATCGATTCCAAGAGCAACTCGTACTTT
CCCATTGCGTATACTGTGATTGCTTACCAGGAAACATTGCCTCGTGTTTC
AAGACAGATATAAACGATACCAAGTCTACACTTTGCTTAGATTGCAACAT
AATATCTTCTAGGGACGTAGCCTGCTCTTATTGTTGGCATCCACTTTGGT
CTAAAGACTTCTCAATATTTAATATAAGTAGACTAGGTGAAGAAATTGAG
GTGTCAGAATTTGATTGCGCAACATGCACATGTTCTAGACGTGGAACTGT
CTATTGTATATACCTTCAACAGCGCTGTTACAGTGTATCAAATTGCGTAC
AGATGTTTAAGACGCTGAAAAACGAAACTCTGGCTACTGACAAGAAATGT
AGAAAATGTCTTTTTGATGGTGATAAGAAAGATCGTTTAGCTCGTTGGAA
TATCAATTACGATACTCTTTCCATTCCTTGTCGATGTGAGGATTCTGGTG
AAAGTGTTTGTGAAATATCGGCAACACCAACCATGTGGCttccttttaaa
aaaatatgtcgaAATTGTACAACAACTTCTTTGGTCaaaaaaaCGTTCGT
TACAAAAGATTGTTCAATTGGAGGTGTGAATCTTATCCATAATTCTTGgc
agtttatttcgaaagactCTACATACCATTGTTTTcaatgtgcttgttac
atgggTCAATTGAAATGTTTAATGCCGGACAGAAAAGTGGAAATATATCA
TTGTGTTGGTAAAGATTGTTTGGAAGAATATGAAAGTCTATCAACTTCAA
TAAATTGTTCAATTGGAGGTGTGAATCTTATCCATAATTCTTGgcagttt
atttcgaaagactCTACATACCATTGTTTTcaatgtgcttgttacatggg
TCAATTGAAATGTTTAATGCCGGACAGAAAAGTGGAAATATATCATTGTG
TTGGTAAAGATTGTTTGGAAGAATATGAAAGTCTATCAACTTCAATAAGA
TGTTCTCTTCCAGTACATCAAAACAAATGCCCACCAGGCTATCTGTTCAG
TTGGTCAAACCAAGTTTGTAATATCACTTGTATCCACGGGTCAAAAATGT
TCAAcgtaataaaagaaaaatggtgcACAAATTTAGGATTGTCAGATCCC
TGTGAAAAATGTCCAGGATGTTCTCTTCCAGTACATCAAAACAAATGCCC
ACCAGGCTATCTGTTCAGTTGGTCAAACCAAGTTTGTAATATCACTTGTA
TCCACGGGTCAAAAATGTTCAAcgtaataaaagaaaaatggtgcACAAAT
TTAGGATTGTCAGATCCCTGTGAAAAATGTCCAGATAAGAAATCATTTCT
TGAAGCGAATAAGAACCACGTTTTGATATGCCATAATTCATCACTATACA
TATGGAAAGATCAAATTTGTGATACAAGGAAAGATTGCCCTGATGgcaaa
gatgaagaaaattgcgaaaaatATAAGAAATCATTTCTTGAAGCGAATAA
GAACCACGTTTTGATATGCCATAATTCATCACTATACATATGGAAAGATC
AAATTTGTGATACAAGGAAAGATTGCCCTGATGgcaaagatgaagaaaat
tgcgaaaaatATTATTGCAGATTTGGAGAAGATAAGGCTGGAATATTTTG
GAACCCAACTGAAGTTGATACTACTGTCTCTAGAGAATGTAGTTCACTCG
TGTCAGACTCTGCTTTAAAAGATTATTGCAGATTTGGAGAAGATAAGGCT
GGAATATTTTGGAACCCAACTGAAGTTGATACTACTGTCTCTAGAGAATG
TAGTTCACTCGTGTCAGACTCTGCTTTAAAAGGTCAATTCACAAGAAGTT
GTATTTATTCACCTCAAAATGAGACTATATGGACAAAAGCAAATTATTGT
GATTGTAATAGAATAAATTTTCCAGTATTTGATAACGTCAATTCACAAGA
AGTTGTATTTATTCACCTCAAAATGAGACTATATGGACAAAAGCAAATTA
TTGTGATTGTAATAGAATAAATTTTCCAGTATTTGATAACCCTGGAAATC
TGACTTGCAACAAACAAAGCCTTGATTACATGATACGCTCCATCACGAAG
TTACGATTTCATGCCTGGCAATCAACAAATAAACGCTTGCACGATATCGA
GGCTAAGAAAATCTTAAACGTTTTATATGATATATGTCCTGGAAATCTGA
CTTGCAACAAACAAAGCCTTGATTACATGATACGCTCCATCACGAAGTTA
CGATTTCATGCCTGGCAATCAACAAATAAACGCTTGCACGATATCGAGGC
TAAGAAAATCTTAAACGTTTTATATGATATATGT
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000006_pilon | genome | sc0000006_pilon:3036413..3040572 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1471-1617:4014 |
| Aaloc | 1369-1470:3555 |
| Aaloc | 1258-1365:3008 |
| Aaloc | 1120-1254:2677 |
| Aaloc | 952-1116:2139 |
| Aaloc | 757-948:1500 |
| Aaloc | 106-753:488 |
| Aaloc | 1-102:1 |
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