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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000059_pilon:833283..838482- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_040391 ID=XLOC_040391|Name=XLOC_040391|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5200bp|location=Sequence derived from alignment at sc0000059_pilon:833283..838482- (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTCGCTTTCTGGGATGTAAGTTGCAAATTCATTTTTGAAATACCTTA
TTGGGGAAAACTTCGTCGGGGAAAAGTGACGAAATTTTGGACAAGTGACG
AAAATTTTCACCGACGAAAATTTTCCCCGACGAAGTTCTCCCCGATAAGG
TATTCCTTTAGGCAGAGGGTTTTATTTAGGCCCAGCGACCGGCGAACGGC
AAATTTCGCTGGCCCAAAGCACAAAAAAACAAATCGTCGACCTGAAAATT
CGCCGGTTCGTCGCGTAAAGTACATATTCGCGCTAATCAACACACTGGGC
TTGCTAAGAATTTGCTAGCGTATCAAAAGCGAAGCAAAACTCCTTTGCAA
GACAAAAATTAGAACCCTAGCTAGGCCTGGTTTAAAAGAACTCTAACTCA
TTTTTGTTCCTTTGCTCAAACATAAGATACTGTTTCTGCCATGAAGGGAA
CTTTTTAAAGTTCAGTGGGTTGGAGGACGTTATTCACTTTGGTCAGCCAT
TGGAATGAGTATCGCCATATATGTCGGTACGCACGTGTTGTGTTATACTT
CAAATACAGTTAAGGTGAGACCAATTTGATTAGTTGTTTTACGGGCCCGA
CCGACCCTGAAATTCCAATTTGGTCGTAATACATTTTTATTTTCATTGCT
TTACTGACTGTCAAATTTTTCAAAAATTTGGTAGTTTTTCCAAGGTTTTG
AGAACGTTATGTTCAATTTTTCATTTTATCCATGAATTCGAACTTTTTGT
GTCTTTTTATTTTCTTCTATTTCGCATTTTTGTCAAGATATAGTAGCTTT
TGCTGCCTTTTTAGCAGATTTTATAGGTGAAATTCTACTATTATTTTCAT
TTTTTTTTTCGCCGACCGACCGACCCTCTTTTTAGGTAGCTTTGCCCGTA
AAACAACGAATTAAATTGGCCTCGCCTAAACCCTAATTAAAACCTCTAAT
ACCATGTTCAGACTTTATTGTTCCGTTTCGCTCCGGTATGATTTTCGTTA
CGGATCGAGAGTGTTCATATCGGTTTCGGAACGTTTCGAAGCAAGAAAAC
GGAGTAGTTCCGTTCCGATTAGAAAAGTGGAGCGAAACTGTTTCTATCTG
TTTTGCTTTGTAACGTCTTCTTTCTTAACGTTTCAAATTTTGACGTTCAC
CGTTTCGAAACGGAACAGAACTATAACGCCTGAACATGGTCTAGAGACGT
GTTGTGTGTGCCAGACAAGCTTTTTAGAGAGAGAAAGTGGTATTGACCTT
TTTATTCTAACACGACTCTTCGTTTTTTCTTGTCTTTTTTATATCCTTTC
CTCCTCTGGCCCCCACTGTAAGGGTCATTTTTTGGCCAAACTTTCTCTGC
ATGCACTGTAAAGGTTCGATTTCGGAAGCCAAATTTTCCGCCGAACAGTT
GTTTTCAGACCCCCCCCCCCCCGCCGGGTAAGGTCTAGAATGGGAGGGTG
TCCGGGTAGGGTTAGGACTAGCTTTAGGGTGATTTGAGAGCAGTGGGGGC
TGGAGGAAAGGATATAAAAAATACAAGAAATAAAGAAGAGTCGTGTTTGA
ATAAAAAGGTCAATACCACTTTCTCTCCCTAAAAAGCTGTCTACCTACGT
CTTGTGTAAAATACTGTGTAAAGAACTAAGAAACAGAACAGTTCTCAGAT
AGTGTCCCAAAAACTTAAAATAAAAAACTACTCTTGTCTGGCACACACAA
CAAGTTGGCCACACCTCACCACCTTTGCTACCATTTTTGTTTACATTTTT
TTTGCTGATGAAGCATTTTTAAAAGCGCGGAATATTTCCGACCATTAAAT
TTTGAAATTTTTAGAGTTTTGGATATTTCCGACCATCAAATGATATTTCT
GACCATCAAATGATATTTCCGACCATCAAAAGATATTTCCGACCATCAAA
TGATATTTCCGACCATTACGCTATGATATTTCCGACCATTAAATTTTCAA
ATTTTCAGAGTTTGGGATATTTCCGACCATCAAAAGATATTTCCGACCAT
CAAATGATATTTCCGACCATTGCGCTATGATATTTCCGACCATTAAAGAT
ATTTCCGCCCGTCTACGGAAAAAAAATTTGCCTCGCCATCACCCTCGCCA
CTTTAACCGTAGCCGTAGAGAATTCCAGATACATAATCTCGCTAATGAAC
GCGCACGGGGAACACAAATTTGCACGAGTAAAGGAAATTTCGAGATATAG
AGCTAGGTTTATAGGGCATTGTTGAATGAGTACCGTAAAACTTGTTCGAG
TTAAGGAGACATTCGAGCTAAGAGGTTCAAGTTTAACCCTATTCGTACTA
GGGGGGGGGCTCTTTCTGTTCGGAGGTCAAACTATTGGTAATAGTTCATG
AAATAATAGAGCTTTTGCCGTGAAATTTTCTGTAAATTCCTAACTTTTAT
TTAGCTTCAAAATAAAAAAAAATTTGACACCTAAATATTTTCACACCTTG
AGCATGATGACATTTCTGACAGTAAGGTGTCACAAAAATTGACACTTTTC
TAATACAAATTTATTTTTAATGTCAAATATATCATTTAAACCGTAGTTTA
TTGAATATTTAGGATAAAATAAGCATTTTAAACTCAGACAACTTTTTTCT
AAAGCCTTTGTTAGAATACAATAGCTATTTATAAGAACAAAGGAAATTTT
CGGTTTTTGCTCACTTTGGGCATGATGAGTGACGTCATCAAAAAAATTTT
TTGTCAAAAGTTACCTTACGTGACAAGGATCTTGTGTGCCAAATTTCATC
AAAAAAGACCCACTAGATGAAAAGTTAAGGGGTGGTACAGGAAAAGCCCC
CCCCTAGTTCTGAACCGCCCCTAAAAGCCTAGTTTGAATAGGGTTAAGAG
ACTCCGCTGCGAAAGAGCCAGTAATAGCTTTACAGTACACATTGTACATA
ATTCTAGACATCTTGAATTCAGTCGTAGTCAAAAAACTTCTTACCTTCAT
TGCCAAGAATTGGAGAATTTTCATCATACGTTATTCCATCCTGAATATCA
AGTGACTTAGGGCTAAGGCCATTGAGTTTCAAGCCCGAAGGGCTAGAGGC
GAGACTCCTGAATGAGAAATGAAAGCACTTATTTCCCATTCAGAAAGCCC
GCGCGTAGTTTTTACACAAACGCCGGATTGAAACTAAAATTTATCGCTAG
ATTTCAAAAAATGTAGTCCTCCTAAACAAAGCAACTGCTAGACAATCCGT
CGTCATGATTACAGCGCGTTCTATGCGCGTTTTGGATGGGAAATAAGTGG
CTTCAATTTCTTTTGCCTGAGAAGAGTTAAAGTTTCATCTATAGCACTTC
GGGCTTGAAACTCAATGGCTAAGACCTACTAAGAGCTAACCATGTATTAC
GAATGTTTTAGGAATGGATGATTTTGAACAACTTTTATCTGGTGCACATT
TCATGGTAGGACAAAAGATAAAACAATTTTGATCAACTAACTTATTACAC
GAATATTACTAGTCATTCTAATAAGACGAATTGAACAATTTCCCGTTAAT
AAAAACCCCCTCAATTAATAAAAACCAGCCGCTGTTTCCTTGAAAAGGAA
GAAAAATTCGTGTTAATTTCAGATCGTGCAACTCTCAAGGTCATTAAATA
TTTGCCTAGTAATATTTGTGTAATAAAGGTACATCTTCAATTTTGAGCTT
TACTAAGCACATTGTGACGTCAATCGATACTTTCAGACGTTTTGAGATAG
AGAGCGTTATATCAGTACTTTAACTTATTTTGTTCCTTCGAATATTATGA
TCTTCAGTTATCGCTTAAGTTCGTGACATTTTATCTTCAGCTAACTGATT
TTCATATTTTATGTCCTTTCATCTGTAGGATAACCATTTCCAAACTGTCC
CAATGGAAGAAAATGTGAGTATTCGTAATATGTGCCGATGTTTATGACAT
TTTATTTTTACACTGGTTTTGAAACAAGAATACGTTTTTCCTTTCATGTT
TAAAGCCAATAAGTTTGTTAAGTTCATTCAATTAAAATCGATTGCTTTTG
AATAAACGCCTCCTTCTTTTAAACACCCCCTTGAATAAACGCTCATCCTT
AGAGGAAAATTTTAAATAAAAGCACTCCAAAATAAATGCCCTCTTTGAAA
AAAAACGCATCCTCTCTAGGAGGAGTCTTTATTTGAAACAAGTAATTGTA
AGGTAGTATACTCACAACGGTTAAAAAAAGTTTTACTAGCATTCTTTTCG
TTCCAACAGCTACCAGTCATCATGGCGGTGTTGGGAGTATGGTACAACAA
CTTCTTTGGCTTACAAACGCACGCTCTTCTTCCTTATGACCAGGTGAGAA
TTTACCTATCTCTCTTGATTCCCTTTTCGCAAGTTTACAAAAAAAACATA
TATATTTTACTCCCTATGTTGAGGAGGTGTGGACGTCCAGGGTGGTCTGG
AAAAAAAATCCAGGGACTGGTTTTTCGATCGTAAAAATTCAGGGTGGTCA
GTAAAACGACTTCAAAAATCCAGGGTGGTGTAAAAATTAGAAAAAAAATC
CAGGCGATCCTTTGGAACCTTTCCCAAAAAGACCTCCTCAACAAGGGGTG
TCAATTTGTTCTGGAATAGCTCAGCCTGTATTTGATGTATTTTCTCAGTC
TAACGACGAAAGCATTCTCTTTATTAAGCTGAAAAGAATTGCTGTATCCC
CCCTCTCCCGATAGAGGGAACAATGATAATCATTTCTTGGGAACTTGCTT
TATCGAAGTGAGTGCCTTTTTCAAACACAAACCATTATCTATTACGTTAC
GTGCTGAGTGTTGAGGATTTTAACACGGAAATTATTTTCAAAGCGACCGT
AGTGCAGTGGTAGAGCACCCGGCTGCGGTGCGCAAGGTTGTGGGTTCGAC
CCCTAGCCGGGTCATACCAAAGTTTCCAAAATGGTACTTGATGCCTCTCT
GCTTGATGCTCAGCAATTAAGAGAGGGATCAAGGGTAAGTGGAGCAATCC
AGTGAGAAAGAGTGGCGCCCTCCCCTACCTTCGAGTAGATAGCTATCGAA
AGAGGCTCCTCGGGTGGCCTGTGACTGCGGAGCGAGTAAGCAATTAACGA
TTGATTTTTTTTCTGTTTTAGTACATGCATCGGTTCTCCGCCTATTTCCA
ACAGGTATTTATATGTCGAAGAAATTTTTCAAGAGCAGGTGTTAATAATT
TATCATTTTGGCATCTTTTTAGAATAAAAATTTATTCGGGTGACAGCTCA
Coding sequence (CDS) from alignment at sc0000059_pilon:833283..838482- >XLOC_040391 ID=XLOC_040391|Name=XLOC_040391|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=744bp|location=Sequence derived from alignment at sc0000059_pilon:833283..838482- (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTCGCTTTCTGGGATATGTTCGCTTTCTGGGATTGGGTTGGAGGACG
TTATTCACTTTGGTCAGCCATTGGAATGAGTATCGCCATATATGTCGTGG
GTTGGAGGACGTTATTCACTTTGGTCAGCCATTGGAATGAGTATCGCCAT
ATATGTCGGAATGGATGATTTTGAACAACTTTTATCTGGTGCACATTTCA
TGGAATGGATGATTTTGAACAACTTTTATCTGGTGCACATTTCATGGATA
ACCATTTCCAAACTGTCCCAATGGAAGAAAATGATAACCATTTCCAAACT
GTCCCAATGGAAGAAAATCTACCAGTCATCATGGCGGTGTTGGGAGTATG
GTACAACAACTTCTTTGGCTTACAAACGCACGCTCTTCTTCCTTATGACC
AGCTACCAGTCATCATGGCGGTGTTGGGAGTATGGTACAACAACTTCTTT
GGCTTACAAACGCACGCTCTTCTTCCTTATGACCAGTACATGCATCGGTT
CTCCGCCTATTTCCAACAGGTATTTATATGTCGAAGAAATTTTTCAAGAG
CAGGTGTTAATAATTTATCATTTTGGCATCTTTTTAGAATAAAAATTTAT
TCGGGTGACAGCTCATACATGCATCGGTTCTCCGCCTATTTCCAACAGGT
ATTTATATGTCGAAGAAATTTTTCAAGAGCAGGTGTTAATAATTTATCAT
TTTGGCATCTTTTTAGAATAAAAATTTATTCGGGTGACAGCTCA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000059_pilon | genome | sc0000059_pilon:833283..838482 - |
Properties
| Property Name | Value |
|---|
| Aaloc | 244-372:130 |
| Aaloc | 160-243:992 |
| Aaloc | 124-159:1373 |
| Aaloc | 82-123:1838 |
| Aaloc | 19-78:4736 |
| Aaloc | 1-18:5201 |
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