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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000054_pilon:1028396..1032434+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_040363 ID=XLOC_040363|Name=XLOC_040363|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4039bp|location=Sequence derived from alignment at sc0000054_pilon:1028396..1032434+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGTATCTATAATGGCTACTCAATGCCTGCAACCTACAAATACAGGTTC
ATCAGGAAGGAGGACAAGAAGTAGTCGAAATAATTCCATTGATTCTGAAC
GTTTTACTAGTGTAGACTCGCAACAAGTTACTTGTCCTGGCACTCCTTCT
GCAGATAATTTTGGCACCAAAGTAGCAACTTCTACTCCTGCATCCTCTGC
TTCTTTAAATGAAAATGTTTGCAGAAATCAACCTAAACCTCAGGTAATAA
GACACAGTTATCATGGAAGatagttttagttttttagcTCCTTaatataa
attgcttttttgggcagttccagaaaaaaaaaccatcCCTGTGGACGACA
ctgttttttggaattttttttcacttggaaatACTGAGAAATTTTTAAGA
AACGTTCTGGAAAATGCAGGATTTTCCTATTTGGTTTTCATATATATctg
aaaatcactaaaattttcttttttcttgattgcTAAAAAATTATCGGAAA
ATCCAAGAATTttcctgaagtttttcaaaagtaaattgttgCAGAAATCC
ATGTCGTCCACAGGGGGGTGGTAACGGAGTATTATTGGAACCACCCATTA
GGCCACATATGTAGATGGTCTGTCACCACGTTCCTTTGCTTTCGATTTCA
TCATCAATATGGCGGCCACtttttttATAATGCGATATCTCTGTGTTTAT
GACTACGAAGATATAAACACATTACATTCGCATACCAttagttggtctaa
tatcaacatccctcgtctaattctgacacccttctatAGAGAAAGGAata
taatatgaaagcttgaatcactgattgaaaaaggattattcctctctgac
cactaaggggtcagtcacaaatcgattttaagttagaagaacgtcaattg
acgtatatgggtgggtgggttaaaggttgttgacgtttttcagaaacatc
gatttttcattccatgccaaatattacttctcgccatgtttctgtttgat
cgcttcgtttgttttgaaaaccaaaacaaacggcccgatgtttatgtctt
ttctttgtttgacggcccgaacggcccttgaatttttgcagatggccgtt
ctttctgtcgctacatactacggagataattaattacgggaattttgtga
acaagtttagaaattatctccgtttcttttttttttcaaatataataaac
tatgcgagccgtagtgaaaatcaagatggctgacgaaaaaGCATTGAAGG
CAggttttatcgattttcggggatatcaaggtgtttgacgtttttgggtg
tgggtgggtgggtcagcttttaaaacgtcaattgacgttcttctaaccta
gaatcgatttgtgactgacccctaAAGCAAGGAAAACAGtttcaatcttt
ctataattttcagctgataaaaagggtgtcggaattagagaaggggtgtc
gacattagaccaagttacggtagtaAAGGGTTGGATATTCTcgcttgttt
tattttgaataataattttttatataaaattatagtttttGAGAAACTTC
TACCTGGAAATGCAGAAGATGCAGGATTATATACATTGTGTAATCTCCCC
AAATCAACTAACACAAAGTCTTTATCTTATAATACTAggaacctaatttt
tcatgTACAGGAATTTCTGCTGTATAATTTATGTTTTACACAAAGCTATT
GCCTAAATTGTTCTTTCTAGAAGGTATTTCAGAGTCATAAATTGTTTTCT
GGTTTTCTGCTGCTTTTATAAAACCAAATGCATGTAATatttaaaaagag
aaagaaaatccAGGCTAAATTTAGTGCTAATCAAATGTTGCACAGAAATT
GTCAGAGATTGAATACTCCTTTAGGAGATGGTACTACAATTTTGGTTTGA
CGATTATTCCAGCTCTTTTTTCTGACCATTTTTATGGTTATGTAAAAATA
TCTCtagagtaaacaaaaaaaatcgacTGGATGAAATGTCTAAGATTCAA
TTTTCCACATGTGTATCTCATAAGAATTATCTTCGTTTACATTCTTCAAT
ATTTGATCATAGGTTAAACGAAAGTTGGACCTGGAGCACAAAACAATATT
ACAGCCTCAACCGCAACAACCACAGCCTCAAATCATATATGCTACATTCA
AACCACCAACAAAAGTAACTGCAATCAAGCCAAAGCCAGCATCTGGTCCC
AATAGAAGATCTCGTCCTCGATCAATGCCCCTACCTATCGCTCCTGCAGC
ACCAACAAACACAGGGATGACCATTCAAAAACCATTAGAGCCAATCACCA
ACAAACCACGTAAGATATACCAaattacttcgaataaatgcCCCAGATGT
ATGATCCTCTCTTAAAGGTACTTGTTTTAAATGAACACCCTTCCTAGAGG
ATAGGTTGTGCAAAGGGAGTGTTTAAAAGAAGGGATGgctattcaaagta
atacggtaaaCCAAATCTGAATTTTTTGTGGTTGGCTTTTATTAAAATGT
TTACATGCCTGATCCTACATTTTGGAATAAGGTCAATAACTTTTAAGTTT
ATTGAttaatcaaattttcaacttaCATGCCTGTTTGACCTTTCCAATAA
AGGATTTGAAAGGTTTAGTTGGACAACAGTTACCATCAATTTTCCTGAAC
CAATTTGGAATGAAGGacttttattattgttttctgatatacttttcttc
tttcttattCAGCTCTCAAGTCTCCCCATGGTGGTGAAAGGCGATACGAA
ACCTCATTGGGAATTCTTACCAAACGTTTTGTTTCCCTTCTAAGAAGTTC
AACAAATGGTATACTAGACTTGAATAATGCAGCTGAAATATTGGATGTTC
AAAAAAGACGAATTTATGACATTACCAATGTCTTAGAGGGAATTGGTGTT
ATtgaaaagaattctaaaaataatatcaaatggGTGTAAgttgttttata
ttttgtaaaaacttAATAGTAAATTCATGATTGTTATACAGTGTCAACAG
TTCTTTTGTCTTAGATGAAAAGCTTTGCTTTAAACCACTGGTTTTAAATA
CTTCAAcaacttcattttcaaatttttcaaccttGACTTCGTGGTATTGT
GTTTTTGGTCCTTGAATTGCAAATAGTATAGGAAAATGTTTAGATGTTAA
AGTTCTGTGAAATTTTTGTAATTCAACAATTTTAATTTAGGGGAGCAAAA
CATTTGGAGAAAACAGATGAAACCAATAGTCCACAAGAAGAAGCTGTAAT
TGGTGCCAAACTTTTAACTCTCCATCAGGAGATTAGTGATTTAAGATTAG
CAGAATCACGATTAGATGAACTGATAGAGGACTGTCAAGGTGAAATGAAA
CACTGTTCAGCTGCAAAACATGTTAATAAGTAAGATTTTTGGTTAAATTG
TTATTTTATACAAGTTACAAGTGATATTTTGGAGCTATTTCTTTGCCAAA
TTCTTAGCAAACTTgattgtttattttgctgtgTTGATTATAAACTCGTA
TACAGaatcaattgatatcaattttagttttacctaatatttaatcattt
ttatccattttcaattttcaatagacATTCCTATGTGACGTATCAAGATA
TACGTGGAGTTCAAGATTTTAATGACAAAACGGTTATTGCAATCAAAGCA
CCTCCTGAAACGAAATTAGAAGTACCCGATCCCGCAGAAGTAAgctttta
taaatattttgactTGGCTCAAATTAGGCTAAACAAACCTGTACAAACTT
TCAACCGGGGTTGAgagtttttaatgttttgaagtgtgacaaaaagaatt
ttgaaccAGACAATGTCTGATGCCCTAAGCGTTATTTCGAGTAGTGATTT
TAGTATTAGTCAACATTTTTAAATTGATCCACTTTGTACattatattctt
caaaagttttaaatcaTATAGTTATTCCCTAAGAATCAAactttcattca
tttttcagTCCATACAAATCTGGCTCAAGAGTAACAATGGACCAATTGAT
GTATACCTTTGCCCTGACGGCAATAAAGAGAATGTGCCA Coding sequence (CDS) from alignment at sc0000054_pilon:1028396..1032434+ >XLOC_040363 ID=XLOC_040363|Name=XLOC_040363|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2196bp|location=Sequence derived from alignment at sc0000054_pilon:1028396..1032434+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGTATCTATAATGGCTACTCAATGCCTGCAACCTACAAATACAGGTTC
ATCAGGAAGGAGGACAAGAAGTAGTCGAAATAATTCCATTGATTCTGAAC
GTTTTACTAGTGTAGACTCGCAACAAGTTACTTGTCCTGGCACTCCTTCT
GCAGATAATTTTGGCACCAAAGTAGCAACTTCTACTCCTGCATCCTCTGC
TTCTTTAAATGAAAATGTTTGCAGAAATCAACCTAAACCTCAGATGGTAT
CTATAATGGCTACTCAATGCCTGCAACCTACAAATACAGGTTCATCAGGA
AGGAGGACAAGAAGTAGTCGAAATAATTCCATTGATTCTGAACGTTTTAC
TAGTGTAGACTCGCAACAAGTTACTTGTCCTGGCACTCCTTCTGCAGATA
ATTTTGGCACCAAAGTAGCAACTTCTACTCCTGCATCCTCTGCTTCTTTA
AATGAAAATGTTTGCAGAAATCAACCTAAACCTCAGGTTAAACGAAAGTT
GGACCTGGAGCACAAAACAATATTACAGCCTCAACCGCAACAACCACAGC
CTCAAATCATATATGCTACATTCAAACCACCAACAAAAGTAACTGCAATC
AAGCCAAAGCCAGCATCTGGTCCCAATAGAAGATCTCGTCCTCGATCAAT
GCCCCTACCTATCGCTCCTGCAGCACCAACAAACACAGGGATGACCATTC
AAAAACCATTAGAGCCAATCACCAACAAACCACGTTAAACGAAAGTTGGA
CCTGGAGCACAAAACAATATTACAGCCTCAACCGCAACAACCACAGCCTC
AAATCATATATGCTACATTCAAACCACCAACAAAAGTAACTGCAATCAAG
CCAAAGCCAGCATCTGGTCCCAATAGAAGATCTCGTCCTCGATCAATGCC
CCTACCTATCGCTCCTGCAGCACCAACAAACACAGGGATGACCATTCAAA
AACCATTAGAGCCAATCACCAACAAACCACCTCTCAAGTCTCCCCATGGT
GGTGAAAGGCGATACGAAACCTCATTGGGAATTCTTACCAAACGTTTTGT
TTCCCTTCTAAGAAGTTCAACAAATGGTATACTAGACTTGAATAATGCAG
CTGAAATATTGGATGTTCAAAAAAGACGAATTTATGACATTACCAATGTC
TTAGAGGGAATTGGTGTTATtgaaaagaattctaaaaataatatcaaatg
gGTCTCTCAAGTCTCCCCATGGTGGTGAAAGGCGATACGAAACCTCATTG
GGAATTCTTACCAAACGTTTTGTTTCCCTTCTAAGAAGTTCAACAAATGG
TATACTAGACTTGAATAATGCAGCTGAAATATTGGATGTTCAAAAAAGAC
GAATTTATGACATTACCAATGTCTTAGAGGGAATTGGTGTTATtgaaaag
aattctaaaaataatatcaaatggGTGGGAGCAAAACATTTGGAGAAAAC
AGATGAAACCAATAGTCCACAAGAAGAAGCTGTAATTGGTGCCAAACTTT
TAACTCTCCATCAGGAGATTAGTGATTTAAGATTAGCAGAATCACGATTA
GATGAACTGATAGAGGACTGTCAAGGTGAAATGAAACACTGTTCAGCTGC
AAAACATGTTAATAAGGGAGCAAAACATTTGGAGAAAACAGATGAAACCA
ATAGTCCACAAGAAGAAGCTGTAATTGGTGCCAAACTTTTAACTCTCCAT
CAGGAGATTAGTGATTTAAGATTAGCAGAATCACGATTAGATGAACTGAT
AGAGGACTGTCAAGGTGAAATGAAACACTGTTCAGCTGCAAAACATGTTA
ATAAacATTCCTATGTGACGTATCAAGATATACGTGGAGTTCAAGATTTT
AATGACAAAACGGTTATTGCAATCAAAGCACCTCCTGAAACGAAATTAGA
AGTACCCGATCCCGCAGAAacATTCCTATGTGACGTATCAAGATATACGT
GGAGTTCAAGATTTTAATGACAAAACGGTTATTGCAATCAAAGCACCTCC
TGAAACGAAATTAGAAGTACCCGATCCCGCAGAATCCATACAAATCTGGC
TCAAGAGTAACAATGGACCAATTGATGTATACCTTTGCCCTGACGGCAAT
AAAGAGAATGTGCCATCCATACAAATCTGGCTCAAGAGTAACAATGGACC
AATTGATGTATACCTTTGCCCTGACGGCAATAAAGAGAATGTGCCA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000054_pilon | genome | sc0000054_pilon:1028396..1032434 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1018-1098:3959 |
| Aaloc | 904-1017:3576 |
| Aaloc | 715-900:3192 |
| Aaloc | 493-711:2715 |
| Aaloc | 244-489:2063 |
| Aaloc | 1-243:1 |
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