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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000019_pilon:159542..164038+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_040315 ID=XLOC_040315|Name=XLOC_040315|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4497bp|location=Sequence derived from alignment at sc0000019_pilon:159542..164038+ (Clytia hemisphaerica_ch_hm2_pilon)
AAAGAACCACTTGCACCCACCAAGAGACGCGACGTGAACATAATTGAACT
GATCTTCCCTTCCGATCTTCTTCCGTCCAACATTTGTATTGAAAGTGGTG
AAAATAGTGAagacaaaatttctgaaaatatcaaAGGGCGTTCGATTGAA
GCCATCGTTAAAACGGGCCAATCAAGTGAAAGCATGActgaaattaacca
atcagatgGTAGACTTGAAACTTTAAACCAATCAAAAGCTAGTGGTTTga
atttgaaccaatcagaggATAGCAAGGCCAAAACTAGCCAATCAAGCATA
TTTGATGTTACAACAACTGACAAATCAGATGAAACTGTCCTAAAGCTTGA
CCACTTCAAGATAATCTCttcaaaccaatcaaaccaaaCTGTTTCAAACC
CCAACCAATCAGAAGAGACCGAGATCTTaaacagccaatcagaagagacc
AAGCTTTTaaacagccaatcagaagagaccGAGATCTTAAACAGTCAATC
AGAAGAGACCAAGCTTTTaaacagccaatcagaagagaccAAGCTTTTta
acagccaatcagaagagaccAAGCTTTTaaacagccaatcagaagagacc
AAGCTTTTtaacagccaatcagaagagaccAAGCTTTTaaacagccaatc
agaagagaccGAAATCTTaaacagccaatcagaagagactGAGATCTTaa
acagccaatcagaagagaccGAGATCTTAAACATCCCATCAGAAGCAGAG
ATGATTACAAGTGTGCACCAATCAGAAGAAATTCTCCTCAATTTCAGCCT
ATCGAATGGAAAAGAAAGCGCTGAAAATCAAATACAACCAGGATCTGAAA
ATGCAACCCATGAAGAAATAAAGGTCGCGCCTACCCATGTTACTCCTGAG
TATCTGACAGCGCAATGCATTATTGTTTGCCAATCACATCCAGAATGTAT
TTCACTGATATCTGAACTTGAAACATATTTCCAGGATAACAATAGCATCG
TTCTCCAACATATGGCAAACGGCAATCAATCtaaacaagaaatattggaa
CCGCAAAGGATTCTGGTTATTCTCATGTCACTGGATACGTTTTTGCAAAT
CAAACCTCATTCTATTGAATGTGTTTTGTTTAACGCACGTGTGAATGATT
TGAGGATGTATGAAACGGTCAAAAGTATCTTACTGAGAATGAATCCTTTA
AAAGTTGTACACGTCAAATGTCATGAGAATGAGGTTAGTCAAAGCACATG
CGTAAATAGTGAGTACACgctctttttttaagaaatgtgTGTTTTTCAAT
TTAATCATATATATCTTAACAACACACttattaactttttggggaaatcg
TATTATAGAGCCTTTTTAGGGAACCTGAAAATGTTGAATTGTTGTTGAGA
AAATCCAATAAAGTAACACATAATAATATAGACGAtttttttCCGGGGat
ttgagctggaaatgatCATTTCTTTGTAAGAACTTTATAAGATTCTAACA
TTACTCCCAACGAATTCGACCATTAGATTTTCAAGGGAAAGGACacttga
gaaatttgaatttgatattcCCAGTTTATATATCTTTATCGATTATTATC
AAATATTTTCTAAGCACTATAAATATAAACATATACTAAAGATTACCTTT
ATTGGGGTTTTAATTAgacggggaaaaatttcgtcacatagaggcatttt
tgtcacttttccccgaccagaattccaaatttgtcaaatttcgacttttt
cttccccgataaggtatctacttttctttttcaaaggtttATTCGCAACA
TTTATGGAATGCTTTATCAAAAGAGTATCTGGCTCCACCTTTCTCGAAGG
ACCATCGATCCTTGTACAGGTCAGTAAGTTTGTTCAATCGATCTGTGATC
CAAGGTTTTACAACAATAATGCTGAAATTCCAAGAAATGGTTGACTGGAA
TGACAATTTCACCTTTCCCAATGAACCCTGTGGTAGCTTGCCAAATactg
gtgaaaaaaaaattgggccCTTCCCTCGAAAATAAACGCCCCTCAATTTA
GggaaaattttcgaataaacgcctcctCTGTCTCATGGTTCTTGTCGTGA
AGTGTTATTTTCTGGGAAAGATGTGTCGTGCTGCTCTGAAAACCTTTGAC
AATAAGGTcctgtaaatattttcttattgttgacttcttcttttgttttt
ctcttcagACTTTGTGGAATGTATTCCTCGTCCATGTACAGTAAGGTAGA
CGTCGAAGTTGAACGTAAAcctgatatcgaaagtgaaagtggttcCCAGA
CTCTTATCTATATGCCGATGAGATCAACAATCAAAGCCATTGCCAAGGTT
TGTGCACTATTTTAtgataagaacgtcaaaaatttttgaaccttcggatg
ttcttaactttttcggtTTTAAAACTTATTCTTAGAAATGTTCTTTAAAG
TGTTAAAAATCCATTATTTTCATGCTTACaagtcaaaaacttgtaacttg
aaTATTGTCAACTTTATTTACATACTAGTAATAGATTTTCATGCCAAAGA
TGCCAAACCATCTTTTTGGTTGCAGTGttgcactttttttataagaacaa
actatataagaacataaggcctcgatggtcaaaatgataagaacaagtta
agaacattttcagactCTAAAACAACCAACTTTTTATAAAGTTGAAGAGA
AACACTCACtaaatggtgaaaataggaacatttttatgcttaaTACTCAA
AAACCTGTAtcattttcaaacctttttccGCGTGaggttatttatttatt
ttttttcagatgagatggagtttttataagatactttaatgatTGGTcgt
ttgaagtaataaaaatgacgcgttctttagaaaaagtaacaaaattgttt
tattactgattaacgaccaaccaaatcaaataagagctagTAAAAACTCC
ATCCCGTCCCtttttttCGTCTCAGAGTGATCCATCGGTGTCGGAAACTG
ATGAATCAGCATTACGTCATGCAATCAAGTTGCTGAAAGAGAATCGTGAA
TTGGACAACAAGGGAGATGTCTTGAAAAGAATTGAAGCACCTTCGAATtg
tcaagaaatgaaagaatttttcgTACCTCGAATCATGGATGAGAAGGTAT
ATTTGCTTTCCCTGCGAAGTTTCTGATTACGCCAgtatgggcttttccag
aaaaaaaattgaatatggggggtggaggatataacatttctttagaaatt
tactcctcggatattgtgacttttgatccttcttacccccggacaagcat
tagttgaccccctggacactcgaacagagcaaaattacccccaaactgAG
CAAGTTTActccccggacaaggcaaaatttgtagatttttttacTCCCTC
CGAACACTATATCCTACAcccccccATGTACGAATATtgtctggaagagc
ccaatattaGGTAGTAGGAGCTTAAAGGTTGGgctaaaatggcaaaaata
accaaaaaagcCCTACTTCACTTTTTGAAGAACCACCCCACACTTTATCA
AATCTGTAGAAAAATTCCTAGAATAATGAAATGTAGAACCTAATTTGTGA
GACAATGCTGTCGTTCTGAGCACGAAATCATTTGAAAATACTATCATACT
ATTAAACATTTTTCTATCTTAGGAGGAATTAACAGAACCAATCAAATCTC
TTTGCCATGGACAGCCATTGTACGTGTATCGGATGAGGTTCGCGGAGATG
ACTTCTAGAGAAGGTGACGTGTCGACCAGTTTTAAAGGAATCAACACCGT
TGGATTAATATCAACTATCAAAATACCTAAGGTTtggatttttctcaaat
tttttatatCAAATACATCTACTGTGAGCACTCGCAAAGAAATTCTTATG
CTCATAAGTACAAAGGTGTGGTGAGAAATTTCCCAAGGAAAAAATAGtgc
ctttttttgttttcagagcGAGCCCTCggcaaactttttcaaaattgacc
aatctttttaaacttttaacatCTAATCTGGAATAATTTTTGTCGCTTAT
TAGcaaattttgttgttgtttcatCTCAATTCCAAACAAGACTTTACTTC
TGCTCGCAGCCGTTTGTTGAGATAATTTGACTTTGAACAAATGaactgaa
aaaaatgatatatttatatttttattccgatgataaatgtttttatcgat
ttttcctcttcttttgttttcacttCATAGTTTGAAGAAACGTTTTACGA
TCATTACGGCTCAGTCAATGTTGTTTTGACGGATGACTTTCAGACCATAC
TCACCGAAGACGATTTCCAGATAgttcaaaacttcaaaagagatattttc
aaaaatatctacaATCTATTGCCTAATGATGATTCCCTCGTGTCTACAAA
ATATGCAATTGTAATGCTGCACCCAAATGAAGATTCCCTGgattttgaaa
ttatgcatCAAACAACAGCTTACTTTGACTCTCTCATCAAAGACGTT Coding sequence (CDS) from alignment at sc0000019_pilon:159542..164038+ >XLOC_040315 ID=XLOC_040315|Name=XLOC_040315|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3924bp|location=Sequence derived from alignment at sc0000019_pilon:159542..164038+ (Clytia hemisphaerica_ch_hm2_pilon)
AAAGAACCACTTGCACCCACCAAGAGACGCGACGTGAACATAATTGAACT
GATCTTCCCTTCCGATCTTCTTCCGTCCAACATTTGTATTGAAAGTGGTG
AAAATAGTGAagacaaaatttctgaaaatatcaaAGGGCGTTCGATTGAA
GCCATCGTTAAAACGGGCCAATCAAGTGAAAGCATGActgaaattaacca
atcagatgGTAGACTTGAAACTTTAAACCAATCAAAAGCTAGTGGTTTga
atttgaaccaatcagaggATAGCAAGGCCAAAACTAGCCAATCAAGCATA
TTTGATGTTACAACAACTGACAAATCAGATGAAACTGTCCTAAAGCTTGA
CCACTTCAAGATAATCTCttcaaaccaatcaaaccaaaCTGTTTCAAACC
CCAACCAATCAGAAGAGACCGAGATCTTaaacagccaatcagaagagacc
AAGCTTTTaaacagAAAGAACCACTTGCACCCACCAAGAGACGCGACGTG
AACATAATTGAACTGATCTTCCCTTCCGATCTTCTTCCGTCCAACATTTG
TATTGAAAGTGGTGAAAATAGTGAagacaaaatttctgaaaatatcaaAG
GGCGTTCGATTGAAGCCATCGTTAAAACGGGCCAATCAAGTGAAAGCATG
ActgaaattaaccaatcagatgGTAGACTTGAAACTTTAAACCAATCAAA
AGCTAGTGGTTTgaatttgaaccaatcagaggATAGCAAGGCCAAAACTA
GCCAATCAAGCATATTTGATGTTACAACAACTGACAAATCAGATGAAACT
GTCCTAAAGCTTGACCACTTCAAGATAATCTCttcaaaccaatcaaacca
aaCTGTTTCAAACCCCAACCAATCAGAAGAGACCGAGATCTTaaacagcc
aatcagaagagaccAAGCTTTTaaacagccaatcagaagagaccAAGCTT
TTaaacagccaatcagaagagaccAAGCTTTTtaacagccaatcagaaga
gaccAAGCTTTTaaacagccaatcagaagagaccGAAATCTTaaacagcc
aatcagaagagactGAGATCTTaaacagccaatcagaagagaccGAGATC
TTAAACATCCCATCAGAAGCAGAGATGATTACAAGTGTGCACCAATCAGA
AGAAATTCTCCTCAATTTCAGCCTATCGAATGGAAAAGAAAGCGCTGAAA
ATCAAATACAACCAGGATCTGAAAATGCAACCCATGAAGAAATAAAGGTC
GCGCCTACCCATGTTACTCCTGAGTATCTGACAGCGCAATGCATTATTGT
TTGCCAATCACATCCAGAATGTATTTCACTGATATCTGAACTTGAAACAT
ATTTCCAGGATAACAATAGCATCGTTCTCCAACATATGGCAAACGGCAAT
CAATCtaaacaagaaatattggaaCCGCAAAGGATTCTGGTTATTCTCAT
GTCACTGGATACGTTTTTGCAAATCAAACCTCATTCTATTGAATGTGTTT
TGTTTAACGCACGTGTGAATGATTTGAGGATGTATGAAACGGTCAAAAGT
ATCTTACTGAGAATGAATCCTTTAAAAGTTGTACACGTCAAATGTCATGA
GAATGAGccaatcagaagagaccAAGCTTTTaaacagccaatcagaagag
accAAGCTTTTtaacagccaatcagaagagaccAAGCTTTTaaacagcca
atcagaagagaccGAAATCTTaaacagccaatcagaagagactGAGATCT
TaaacagccaatcagaagagaccGAGATCTTAAACATCCCATCAGAAGCA
GAGATGATTACAAGTGTGCACCAATCAGAAGAAATTCTCCTCAATTTCAG
CCTATCGAATGGAAAAGAAAGCGCTGAAAATCAAATACAACCAGGATCTG
AAAATGCAACCCATGAAGAAATAAAGGTCGCGCCTACCCATGTTACTCCT
GAGTATCTGACAGCGCAATGCATTATTGTTTGCCAATCACATCCAGAATG
TATTTCACTGATATCTGAACTTGAAACATATTTCCAGGATAACAATAGCA
TCGTTCTCCAACATATGGCAAACGGCAATCAATCtaaacaagaaatattg
gaaCCGCAAAGGATTCTGGTTATTCTCATGTCACTGGATACGTTTTTGCA
AATCAAACCTCATTCTATTGAATGTGTTTTGTTTAACGCACGTGTGAATG
ATTTGAGGATGTATGAAACGGTCAAAAGTATCTTACTGAGAATGAATCCT
TTAAAAGTTGTACACGTCAAATGTCATGAGAATGAGgtttATTCGCAACA
TTTATGGAATGCTTTATCAAAAGAGTATCTGGCTCCACCTTTCTCGAAGG
ACCATCGATCCTTGTACAGgtttATTCGCAACATTTATGGAATGCTTTAT
CAAAAGAGTATCTGGCTCCACCTTTCTCGAAGGACCATCGATCCTTGTAC
AGACTTTGTGGAATGTATTCCTCGTCCATGTACAGTAAGGTAGACGTCGA
AGTTGAACGTAAAcctgatatcgaaagtgaaagtggttcCCAGACTCTTA
TCTATATGCCGATGAGATCAACAATCAAAGCCATTGCCAAGACTTTGTGG
AATGTATTCCTCGTCCATGTACAGTAAGGTAGACGTCGAAGTTGAACGTA
AAcctgatatcgaaagtgaaagtggttcCCAGACTCTTATCTATATGCCG
ATGAGATCAACAATCAAAGCCATTGCCAAGAGTGATCCATCGGTGTCGGA
AACTGATGAATCAGCATTACGTCATGCAATCAAGTTGCTGAAAGAGAATC
GTGAATTGGACAACAAGGGAGATGTCTTGAAAAGAATTGAAGCACCTTCG
AATtgtcaagaaatgaaagaatttttcgTACCTCGAATCATGGATGAGAA
GAGTGATCCATCGGTGTCGGAAACTGATGAATCAGCATTACGTCATGCAA
TCAAGTTGCTGAAAGAGAATCGTGAATTGGACAACAAGGGAGATGTCTTG
AAAAGAATTGAAGCACCTTCGAATtgtcaagaaatgaaagaatttttcgT
ACCTCGAATCATGGATGAGAAGGAGGAATTAACAGAACCAATCAAATCTC
TTTGCCATGGACAGCCATTGTACGTGTATCGGATGAGGTTCGCGGAGATG
ACTTCTAGAGAAGGTGACGTGTCGACCAGTTTTAAAGGAATCAACACCGT
TGGATTAATATCAACTATCAAAATACCTAAGGAGGAATTAACAGAACCAA
TCAAATCTCTTTGCCATGGACAGCCATTGTACGTGTATCGGATGAGGTTC
GCGGAGATGACTTCTAGAGAAGGTGACGTGTCGACCAGTTTTAAAGGAAT
CAACACCGTTGGATTAATATCAACTATCAAAATACCTAAGTTTGAAGAAA
CGTTTTACGATCATTACGGCTCAGTCAATGTTGTTTTGACGGATGACTTT
CAGACCATACTCACCGAAGACGATTTCCAGATAgttcaaaacttcaaaag
agatattttcaaaaatatctacaATCTATTGCCTAATGATGATTCCCTCG
TGTCTACAAAATATGCAATTGTAATGCTGCACCCAAATGAAGATTCCCTG
gattttgaaattatgcatCAAACAACAGCTTACTTTGACTCTCTCATCAA
AGACGTTTTTGAAGAAACGTTTTACGATCATTACGGCTCAGTCAATGTTG
TTTTGACGGATGACTTTCAGACCATACTCACCGAAGACGATTTCCAGATA
gttcaaaacttcaaaagagatattttcaaaaatatctacaATCTATTGCC
TAATGATGATTCCCTCGTGTCTACAAAATATGCAATTGTAATGCTGCACC
CAAATGAAGATTCCCTGgattttgaaattatgcatCAAACAACAGCTTAC
TTTGACTCTCTCATCAAAGACGTT
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000019_pilon | genome | sc0000019_pilon:159542..164038 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1696-1962:4231 |
| Aaloc | 1537-1695:3673 |
| Aaloc | 1366-1536:2976 |
| Aaloc | 1228-1365:2210 |
| Aaloc | 1144-1224:1787 |
| Aaloc | 466-1143:556 |
| Aaloc | 1-462:1 |
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