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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000019_pilon:222204..228069+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_040312 ID=XLOC_040312|Name=XLOC_040312|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5866bp|location=Sequence derived from alignment at sc0000019_pilon:222204..228069+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAAGCTCGAGAGTATATCTATGTGTATACTTTAAAGAGGGAGCGCCG
GAAAAATTTGGTACACtttttctcaggctttttgacgttttataataagc
cccaatttttattttacttttttcatatatttcagAGTCCACTACTGGTG
AAAGTTCAATTTACTTATTTCAAAGAGGATGAAGAAATTAAACGATTGTA
AGTCAAAAACAGAGTCCTTGCCTATATCGAATATAATATGAACTACTACT
TCCATTATATCAACAATGATGTatgattcaaaaaagttttaaaccTAGAG
GCTAAACAAAGTCTTCGTTGAGTTCAAGATTTGTGGTaggaaataaatat
tttaaaagaatttttgacagtttttgatttgaaaatcgtCAACATTTGCT
ATTGTTGATTAAAGACGAAGATAAAgattaaatatattttaatgacAATC
ATTTGTTTTCTAGGGAACCACTGCTACCGAAACCTTCTCAGAAACGAAGA
GTAAGATCCACAGATTATTATAGCAAAATTTTGTCAGAAATGGttttctc
tctttaatttttccatttttccacaatctttctcccattttctaatattt
ttgttatctttctATGTCTAGATGTtgagacatttaaaaaaaatgtttaa
taaaTAGCTAACTCAGCAAAAATCCCTTTTACTTTAAATAGAGTAAAATA
GAAAACTTATCAACTTATAATATGCAAAGTTCACCTCTGTTCCAAGTTAT
TTTCAAACATAAGCAAACTTTCTTAACTTTCAGTTCCAGAAGAAACATAA
CACCAATCAGAAATCACCTTTGAATAATATACAACTCATCACAGAGACTG
TCAACAAGTTACCTGATTCTAAAGTGGTTCAGTAAGTGTTTTATACAGAA
TGAAGGAATGAAACATTTACAGGAAGGAAGATTTCTTACCGGTATGTAGG
TACAGGGATGTCCGATCAAACGAGGGTCCAAATACATTGATGCCATTCAT
CAGGTCCGGCGGAACAGCcataaaagtgataaaaaaatggaataagattc
gctaggaatttgagaaaaaaatctcatttgctcaaaagtcaGGAGGCTGA
AGtttccccagtctccccgcttctgCCGGGCCTGTTCATCCATCACTCTG
TATCTTCAAATACTTTTGGATTTCAAACGCGCGTACACACCCCAACTAAG
AAAGAAAATCCTAATCTCTACtttttttGGGATAAGGTAAAAGAAAACAG
GGTGGATTAATCGCGGTGCTCGTAAGTCTAGACCTATTGGGAACAGGAAC
TAAAAATCGTACGATCTTGTATGCTATTATTGACACTTAATGGGTTAATG
ATAATTATAGGGAATGCTGCGAATGCAGAGTTTGGGTTCAATACAATAAA
ATCAAAGACGGCTACCTGGCGTTGCTGAACTTGGTGACTTattgaaaaag
tacttttaaGTTTTTCCTTCACATTTTTAGGTATACATCAGTACCTCCCG
AACGAGCTGAAAAACCGTGTGATATCAACATTTCGTTCGTACATGAACCC
ATTTATATTGCTGGTAATATTCTCATTGAAATAGATTCTCTCAAAGTTTA
GTCGAGTTAGAGTTACAGGACAAGTATGTGGTTAAAGTGTGTGTTTATCG
AACCGGAATTTTCCATTCCGTTTCTTGACGATGATTCTTTTTTagataga
agcctttcaagtttccaaacattcgaaaaagttacgaggtggaatagacg
ttaattgcgtagaaaaacaCGGGTGACGTCTATTATAGGCAAGAAAAACC
TAATTTGTAATAtatgattctttctttttcttttgtgattgcTAAACAGG
TCGATATAACAAATATTCTCGAGAATTAAGTCAAACACCATGGCTCATTG
ATGGTGAACGTAAAACAGAATCTTCAGTTCaagtaagattttttttgtat
CCCTTCTTCGATTAAATTTTATAGACTTAAATCTCACTCGTAAAATCTAT
AtgcttgaaaatcaaattcaatgtAAAGTATACGAGAAACTATTTTTCGG
AATCCCTAAGATATGAGTCATTAGAAACCAGAACTGGTTCTGTTCCAATA
ACTAAAAGCGACTTTATACATTTGCGGTTTTGTGTGCTGCGgggtgactg
aagcgatttggaataacccgtagttctgacccgcaaaattgagAACAGTA
AAagtcaatcaggatctagacaaattaaAAGCTAACCGTCTCAGTAGCAG
TTAAAAAACTACATAATAAACTCACGAATGGCTGTTGCTTTGTTGCAAAA
TTCTTCAATATTTGGACcaacaagatttttttttcaaaattgttttcttt
tattcagGAATTAATTTGCGATAGACTGATCAAAGCTACCGGTGCATCAG
GTACTGCTTTTGAATTTTGTAGGaataaatttcatgaaaataacatccta
TAACGTCTGTCTCAAAAACACTTAACCTTTATAATCATTTTTCAGCACAA
ATTTTATACTATAATAAAAAGCTAtgcatcgttggaaagatattttcaag
gCAGGGgaataatctaaatgataaaatacttttgaaaaatgatgtgaaat
gaagatgaaaaaatatcgatttttttttcaaaaattatgacatcagactt
tttttaaatatttgaaattggtTGATTCAAATATGTATTGAGATTTGTAG
TATCTTTCttggataaaaagttacagtTCTGTAAAGCAGGCCATTTTTgc
attgttaatttttttggattatGTATGGATTTTTCTTGACACTTCGTCTT
TTAGAAGTCAAATTTATGTCATCTGGGAGAGAAGACTGTGACGTTAGAAT
GCTCGGAAAAGGTATTTCGTAGTTTTATTAAAGTTTATTTCATCAAATTA
ggtttcaattaaattttggaTGGATGTATACCTTCCTTAACccttataaa
tgaaaatcaaaaaagttaaataaataCTCAGATAAACAGCGAATTTGGTG
ATATAAAATTATGAAGTTTTTGTATGAAGTACTTTGAAGTTACAGCTCCG
AAAAAATCGAAAGAACGACTGGATTGCTTTTTAGAATGTCTTTACTCTTT
TATCAGGTAGACCATTTGTCGCTGGTTTGGTGAATCCGAAAACGACGAAT
TTACCGGCTGACGAAGTCAGATCTTTAGAAAgagaaatcaatcaatcaac
ggAGTTAGTTGGCGTCAGGGATCTTCAAGTTACAGATAAGTATGTACCCA
CCTGGTACGCAATGTTATTTCAACGTTgcatggacgttgtgaacattaga
taaacgttgaaacaacgttgcgtgtcAGCTCTGTATCGTTggagttcaaa
ttatagaaatcGTCAACACCGTCTTTACAGGAAAAGAATCTTACAATCAT
ATATGCATATAATGTCTATTTTTACAATAAATCTTATATCAttaactaaa
aaactgaaaggTCATAGGGGGGAAAATaagaggggggagatttaaaaaaa
tcaagaatttggtgggggaacaaaccctggaggacactatggtcGGTCAG
TTTGGACAGCGAAATTCTAGTTTATTTAATAATACTGTTTcttaaaaatg
ctaaaatataaaaggtaaaaatcaagtggaaaataaaaaagccatatgta
taaaaatctacaaaCAACGTAGGACCAGGGTCTATACATGTATGAATCCT
TCGCGAATTATCTTTTCTCTATGAAATGACcattgatttctttttcatgt
tttagaGAAAGCCTTGTCATTCTAAAAGCTGGTGAAAACGAGAAGAAAAA
GTGTTACAGGTAAAGATGCTTCTTATTCAAGTATATTAAGTTAGGGTTGT
ACGTGACATGACCGGCTGGCTGGAGCTATATGGTCCCCTTCTCAACACTC
TATGTACAGTGTGTGATTGACTTAGTTATTGTTCTTTAGGGGGGAGGGCA
CTTTTCATGATTATCTGAAGTCACAATTTCATTTGTTGGTCTTTCGGCTA
AAACCGAGGATAAACTGAACAGTGTCATGTACTTGCAATTACAATCCGCC
TAGAAATAGTAAAGTAGAGATTAGCAGAAACTCTCAATCaattgaaattt
gttttccGACTTTAGTGCGAAGATTTGGTGCCCAGAACCGATCGATGATG
AACAACTCGATGGCATCAATACAACGAAGGTATGTTTGAGGCGTGCTTAG
CAGACCTTTTGTCAGACGATGAGGCTATAAGGTTCCTCCTAGCAAATTGC
CACAATGAGCTGATTAAAGGTTTTTTAAAGAGAATCATAAACTAAAccaa
ggtagagcatccagctacgatGCAAATGGTCGTAGCATCCTAGCCATGAT
ATTTCTAATGACATAATGTCATATTTAGTACAAAAtcgtacttgatgcct
ctcttcTCGATGCTCGGCAGATAAGAGTcgaggatcaagggtaagtcgAG
AAATTGAGGGAAAGAGGCCCTCCCTTACCTTCGGGTGGACAGGTATCAAA
AGAGTAGCTATCGGTTCACCTGCGACTACTTTCGTAGACTCGACTTAGGT
TGGTAAActaaatcatatttcatatgaggtttatttttcttcttcttttt
ttcataggatttgaaaattggtcaaaagacaCCTCTTCGTGTACTGCATA
GGTATGCTTTATACTAtagctttttcaaaatggtgtaatgtgaacaatag
aatttatatccccattgggatttctaGATGTTCATCCCACTGTGTGAAAA
AGTTCCTACagggctgtgaaacaggggtgtttatGTTTATAATCCTGCTG
ATTTTGAAGAGAAGAGTAATTTTTTGACACATCTTTAATTCTGTTTTTCT
TCCATAACAGGCGACCATTGTGCGTTCGCGAGCGGACGATATACTCTATG
AACATCCAACGTATAAACAAAGAAGAAGACACAACTCATCATTATCAATT
GCAATTAAAAACTGAAGCTGGAAcgtatctttttcatttttgagttaaat
aatgatttttatgtTTCCATAATTGAATTTTCACGAATGAATCAAAACTC
ATTATATCACAGTAATGTAGCAAAGTTATAACCTCCCTTTTGATCCATCA
AATACCATCACTTAAGTTATACACATTCGAGTTATGtattattaaataaa
aaatatttttccttaaaTCCTTTGTAACTGGTCATCGTTTAGCTATATCA
AAGAGTTTGTACATGGTGATTTAGGGCGGACGATACCTTCGATGTGCACT
TTAATGGGCGCACCATTCGACATATTGGAACTTGACGTTGATGTAAGAAG
TACTTATATTATTTTTACCGAGATCAAAAATTTGAACCATTGATTTTACA
GCCACGAATTGGCTGGGTGCGgaactcttggatgggaaatgaagctactt
atttcccatccgaAACTCGTGAACCGCGTGGTTTTGACAAAAAGGTCTGA
TATAAAGTAAAAACCATCACCAGATAATGctgtttaaaacaaaaaaaggg
aTCGATTCAATTTGTTATTCTGAATGCGGTGAAAatctcactttttcttg
ctctAGAAAGGTTGAAgctccttcggggctttaaacgaTTAGAACCCCGA
AAATGTTTTTCACTATCTTCTATAATTTTTCTGCattattgatgacgtca
tttttattgATAAACGTGTCAAAACTTGAAGTTAATtggagtgatttttt
tttcagtgagctattgtAGCCAAAGAACACCACTTGATAAGAATAAGGCT
AATATGCAAGTCATTCCCAGGTTTTATTTAAAGAAAGAGTAACTTTTCAT
ATTCTTAATCTTTTTCCTCAACAGGAAGTTCAACTGGACTGGCCACCGAA
AATTGAATCAACGTAA Coding sequence (CDS) from alignment at sc0000019_pilon:222204..228069+ >XLOC_040312 ID=XLOC_040312|Name=XLOC_040312|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2298bp|location=Sequence derived from alignment at sc0000019_pilon:222204..228069+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAAGCTCGAGAGTATATCTATGTGTATACTTTAAAGAGGGAGCGCCG
GAAAAATTTGGTACACtttttctcaggctttttgacgttttataataagc
cccaatttttattttacttttttcatatatttcagAGTCCACTACTGGTG
AAAGTTCAATTTACTTATTTCAAAGAGGATGAAGAAATTAAACGATTATG
GAAGCTCGAGAGTATATCTATGTGTATACTTTAAAGAGGGAGCGCCGGAA
AAATTTGGTACACtttttctcaggctttttgacgttttataataagcccc
aatttttattttacttttttcatatatttcagAGTCCACTACTGGTGAAA
GTTCAATTTACTTATTTCAAAGAGGATGAAGAAATTAAACGATTGGAACC
ACTGCTACCGAAACCTTCTCAGAAACGAAGAGGAACCACTGCTACCGAAA
CCTTCTCAGAAACGAAGATTCCAGAAGAAACATAACACCAATCAGAAATC
ACCTTTGAATAATATACAACTCATCACAGAGACTGTCAACAAGTTACCTG
ATTCTAAAGTGGTTCATTCCAGAAGAAACATAACACCAATCAGAAATCAC
CTTTGAATAATATACAACTCATCACAGAGACTGTCAACAAGTTACCTGAT
TCTAAAGTGGTTCAGTATACATCAGTACCTCCCGAACGAGCTGAAAAACC
GTGTGATATCAACATTTCGTTCGTACATGAACCCATTTATATTGCTGGTA
TACATCAGTACCTCCCGAACGAGCTGAAAAACCGTGTGATATCAACATTT
CGTTCGTACATGAACCCATTTATATTGCTGGTCGATATAACAAATATTCT
CGAGAATTAAGTCAAACACCATGGCTCATTGATGGTGAACGTAAAACAGA
ATCTTCAGTTCaaGTCGATATAACAAATATTCTCGAGAATTAAGTCAAAC
ACCATGGCTCATTGATGGTGAACGTAAAACAGAATCTTCAGTTCaaGAAT
TAATTTGCGATAGACTGATCAAAGCTACCGGTGCATCAGGAATTAATTTG
CGATAGACTGATCAAAGCTACCGGTGCATCAGAAGTCAAATTTATGTCAT
CTGGGAGAGAAGACTGTGACGTTAGAATGCTCGGAAAAGAAGTCAAATTT
ATGTCATCTGGGAGAGAAGACTGTGACGTTAGAATGCTCGGAAAAGGTAG
ACCATTTGTCGCTGGTTTGGTGAATCCGAAAACGACGAATTTACCGGCTG
ACGAAGTCAGATCTTTAGAAAgagaaatcaatcaatcaacggAGTTAGTT
GGCGTCAGGGATCTTCAAGTTACAGATAAGTAGACCATTTGTCGCTGGTT
TGGTGAATCCGAAAACGACGAATTTACCGGCTGACGAAGTCAGATCTTTA
GAAAgagaaatcaatcaatcaacggAGTTAGTTGGCGTCAGGGATCTTCA
AGTTACAGATAAaGAAAGCCTTGTCATTCTAAAAGCTGGTGAAAACGAGA
AGAAAAAGTGTTACAGaGAAAGCCTTGTCATTCTAAAAGCTGGTGAAAAC
GAGAAGAAAAAGTGTTACAGTGCGAAGATTTGGTGCCCAGAACCGATCGA
TGATGAACAACTCGATGGCATCAATACAACGAAGTGCGAAGATTTGGTGC
CCAGAACCGATCGATGATGAACAACTCGATGGCATCAATACAACGAAGga
tttgaaaattggtcaaaagacaCCTCTTCGTGTACTGCATAGgatttgaa
aattggtcaaaagacaCCTCTTCGTGTACTGCATAGGCGACCATTGTGCG
TTCGCGAGCGGACGATATACTCTATGAACATCCAACGTATAAACAAAGAA
GAAGACACAACTCATCATTATCAATTGCAATTAAAAACTGAAGCTGGAAc
GCGACCATTGTGCGTTCGCGAGCGGACGATATACTCTATGAACATCCAAC
GTATAAACAAAGAAGAAGACACAACTCATCATTATCAATTGCAATTAAAA
ACTGAAGCTGGAAcCTATATCAAAGAGTTTGTACATGGTGATTTAGGGCG
GACGATACCTTCGATGTGCACTTTAATGGGCGCACCATTCGACATATTGG
AACTTGACGTTGATCTATATCAAAGAGTTTGTACATGGTGATTTAGGGCG
GACGATACCTTCGATGTGCACTTTAATGGGCGCACCATTCGACATATTGG
AACTTGACGTTGATGAAGTTCAACTGGACTGGCCACCGAAAATTGAATCA
ACGTAAGAAGTTCAACTGGACTGGCCACCGAAAATTGAATCAACGTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000019_pilon | genome | sc0000019_pilon:222204..228069 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1108-1149:5825 |
| Aaloc | 1009-1107:5194 |
| Aaloc | 895-1005:4862 |
| Aaloc | 850-891:4608 |
| Aaloc | 787-849:4117 |
| Aaloc | 733-783:3757 |
| Aaloc | 601-729:3109 |
| Aaloc | 544-597:2807 |
| Aaloc | 499-540:2358 |
| Aaloc | 418-498:1852 |
| Aaloc | 334-414:1482 |
| Aaloc | 235-330:784 |
| Aaloc | 199-234:465 |
| Aaloc | 1-195:1 |
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