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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000304_pilon:216157..218334- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_040292 ID=XLOC_040292|Name=XLOC_040292|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2178bp|location=Sequence derived from alignment at sc0000304_pilon:216157..218334- (Clytia hemisphaerica_ch_hm2_pilon)
ATGCTTCAAAAGTTTTTTCGTAGAGGGCGTAACAGTTTGAATCGATCGTC
ACTGAAAGAAGACAGTAGTGGTGGAGGCGGTGGCTCGAAACCTCTGTTTA
AAAAACCGAAACTTTTTCACTCTAAGAGCTTAGACGAGACAGCTCTGACA
GAGAAACAACAATCACCCAAACCGATGCAATCAAATTCGCTCGGCCGCTC
GAACGGTGAGCCACGAAGTAGAGCTCCACTTGCAGGAAAGGATGATTCGT
TTGAAACGGAGAGTGGTAGGAAAGTACATTTCAAGGACGTTCAAAGTCCT
AACGGAACTATAGACAATATGGCTGATGATAAACTTTTTGATGATGGTGT
AATGAAAGCATTTGAAGTTGGTAACTTGAGTATACAAGAATTTCTCGAGT
CTCCACACACTTCGCCTGAAACAACACCTGATACAACGCTCATCAAGAAA
CACAAGGAAAACGGTACCCATAAACCAGGTATTCTGACCAAATCGAAAAG
CCTACCCACCTCACCTTCTAAGAAGGTTTCTCTTTTGGATCAAGCGCACG
CTAAAGCTGGCTTTAATACAGATCGTTTACCCGCTTCACCGGCTCTGAGA
CGCCAGGTCCAGATGAGACGTTCCTCGACTGAAAGCGATGCCAAACCGAA
ACCATCGTTAAGGAAAAGTCATCGTTTCAGTAAATCGTTAGAACATTTAG
CACAGCAAGTTTTCGGTGATGAATTCGAGACGCAGCTTGAGAAAGCTGTC
CATGAAGAACCACCGAAATTTCCATTAGCCAACGTTGAAGAGGACATCAT
TGAGCCAACTTCAGCCCCTGTAGCAGAATCTTCTCCAGCTGTCTCCAGAA
ACACAAGCGCTAAGAAAGAAAAACCAGCTATCGCTAAGAAACCGAAAATG
GGACCCCCGGTGGCTTCTAAAGGCCTTAAACGTGAAGCTTCGATCCCTCC
CAAAGAGCCTGTCGAAGGTGAATCGGTGACATCCAAAGTTAGTGTTAGCC
CAAAATCTGTTCCTGTTATTCGGCGTAATTTACAACGTTGTCATAGTGCG
TCGCAACACACTGAAATGCGGTTGACGTTGAATAAAGCACAACCAATAGC
AAAATCTGTTGATTTCCCGTCACCAAATGCTGAAGATAAACAACCAGAGA
AACTAGAGAGCTGGGGTAACAAAATGGATTTGTCGAGTTCACGTACGTCT
AGTTTAGGCGGGGAAGGTATTGGGAACTCGCGAGCTCTCATGGATCCGGT
CATTGAAGGAGTTCCGATGGAATCACCACAGAAATGTGTGACCGGAGGTA
ACGAGCCAGGCAAAGACCGCCAGAGAGCCAAATCTGTCGGTTGTGTTGGT
AACCCGATGACGTCAAACCAATTACAATTACGATACCAAGATGCCAAATT
GATCAAGTCTGATTCGAACGCTGCCACGTGTGGAAGTGATTTAGATTTAA
GTGAAAGTCAGACTTCTATTTTGGATTTGAATTTCCCTCCGCCGCCCCCT
GTTGATCACGAGGAAGAAGTTTTCCACGAGAGTCCGCATAAAGTGGTGGA
AGATGAAATACCGTTCGATTGGGAAGTTGTTTCTTCTGATGGTGGTTCCG
CTGATTTTCAACCTGACGGCTCCATTTCCGACCCGTTAACCGATACCCTA
TTTTCTATCGTACCGCTTCCTGAAGATCCGGAACAATTGAAACCCGCCTT
AACAAGAGCTTTAAGTGAGATGGTCAGCGAAATTATTTCAGCTCGTCATA
AACTGAATCGTATTTTAAAAGCGATAGAGATTCACCAACAGATACTGAAG
GATCAAAGTAAACAGATCAACACTCAGAATCAACAAATCTCGCAACTTCG
TTTCGCTCAATGGGAACAAAACATTGCTTTAAAAAGCGTAAAATTACGAC
CGAAACAACCCGTTCAAAGTAAACCCAGGAGACCGCAAAGTGCGCGGACC
TATAGACCACAAAGTCGTGAGATAGCCGAGATAAACAGTACACTGGATAG
TCTTTTACATCAATGCTCAACCATGCAGATATCACCGCGTAGCGACAACG
GTGACACAACATTGAAACGTTCGAATCAGGTCAAACGCTCGAATACCTTT
CCGTCTAGAGAACATGTACCTACATTGAAACGTATCGAGAGTACTAATGA
CTGTCTATGCACGTCACCTACTAAATAA Coding sequence (CDS) from alignment at sc0000304_pilon:216157..218334- >XLOC_040292 ID=XLOC_040292|Name=XLOC_040292|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4356bp|location=Sequence derived from alignment at sc0000304_pilon:216157..218334- (Clytia hemisphaerica_ch_hm2_pilon)
ATGCTTCAAAAGTTTTTTCGTAGAGGGCGTAACAGTTTGAATCGATCGTC
ACTGAAAGAAGACAGTAGTGGTGGAGGCGGTGGCTCGAAACCTCTGTTTA
AAAAACCGAAACTTTTTCACTCTAAGAGCTTAGACGAGACAGCTCTGACA
GAGAAACAACAATCACCCAAACCGATGCAATCAAATTCGCTCGGCCGCTC
GAACGGTGAGCCACGAAGTAGAGCTCCACTTGCAGGAAAGGATGATTCGT
TTGAAACGGAGAGTGGTAGGAAAGTACATTTCAAGGACGTTCAAAGTCCT
AACGGAACTATAGACAATATGGCTGATGATAAACTTTTTGATGATGGTGT
AATGAAAGCATTTGAAGTTGGTAACTTGAGTATACAAGAATTTCTCGAGT
CTCCACACACTTCGCCTGAAACAACACCTGATACAACGCTCATCAAGAAA
CACAAGGAAAACGGTACCCATAAACCAGGTATTCTGACCAAATCGAAAAG
CCTACCCACCTCACCTTCTAAGAAGGTTTCTCTTTTGGATCAAGCGCACG
CTAAAGCTGGCTTTAATACAGATCGTTTACCCGCTTCACCGGCTCTGAGA
CGCCAGGTCCAGATGAGACGTTCCTCGACTGAAAGCGATGCCAAACCGAA
ACCATCGTTAAGGAAAAGTCATCGTTTCAGTAAATCGTTAGAACATTTAG
CACAGCAAGTTTTCGGTGATGAATTCGAGACGCAGCTTGAGAAAGCTGTC
CATGAAGAACCACCGAAATTTCCATTAGCCAACGTTGAAGAGGACATCAT
TGAGCCAACTTCAGCCCCTGTAGCAGAATCTTCTCCAGCTGTCTCCAGAA
ACACAAGCGCTAAGAAAGAAAAACCAGCTATCGCTAAGAAACCGAAAATG
GGACCCCCGGTGGCTTCTAAAGGCCTTAAACGTGAAGCTTCGATCCCTCC
CAAAGAGCCTGTCGAAGGTGAATCGGTGACATCCAAAGTTAGTGTTAGCC
CAAAATCTGTTCCTGTTATTCGGCGTAATTTACAACGTTGTCATAGTGCG
TCGCAACACACTGAAATGCGGTTGACGTTGAATAAAGCACAACCAATAGC
AAAATCTGTTGATTTCCCGTCACCAAATGCTGAAGATAAACAACCAGAGA
AACTAGAGAGCTGGGGTAACAAAATGGATTTGTCGAGTTCACGTACGTCT
AGTTTAGGCGGGGAAGGTATTGGGAACTCGCGAGCTCTCATGGATCCGGT
CATTGAAGGAGTTCCGATGGAATCACCACAGAAATGTGTGACCGGAGGTA
ACGAGCCAGGCAAAGACCGCCAGAGAGCCAAATCTGTCGGTTGTGTTGGT
AACCCGATGACGTCAAACCAATTACAATTACGATACCAAGATGCCAAATT
GATCAAGTCTGATTCGAACGCTGCCACGTGTGGAAGTGATTTAGATTTAA
GTGAAAGTCAGACTTCTATTTTGGATTTGAATTTCCCTCCGCCGCCCCCT
GTTGATCACGAGGAAGAAGTTTTCCACGAGAGTCCGCATAAAGTGGTGGA
AGATGAAATACCGTTCGATTGGGAAGTTGTTTCTTCTGATGGTGGTTCCG
CTGATTTTCAACCTGACGGCTCCATTTCCGACCCGTTAACCGATACCCTA
TTTTCTATCGTACCGCTTCCTGAAGATCCGGAACAATTGAAACCCGCCTT
AACAAGAGCTTTAAGTGAGATGGTCAGCGAAATTATTTCAGCTCGTCATA
AACTGAATCGTATTTTAAAAGCGATAGAGATTCACCAACAGATACTGAAG
GATCAAAGTAAACAGATCAACACTCAGAATCAACAAATCTCGCAACTTCG
TTTCGCTCAATGGGAACAAAACATTGCTTTAAAAAGCGTAAAATTACGAC
CGAAACAACCCGTTCAAAGTAAACCCAGGAGACCGCAAAGTGCGCGGACC
TATAGACCACAAAGTCGTGAGATAGCCGAGATAAACAGTACACTGGATAG
TCTTTTACATCAATGCTCAACCATGCAGATATCACCGCGTAGCGACAACG
GTGACACAACATTGAAACGTTCGAATCAGGTCAAACGCTCGAATACCTTT
CCGTCTAGAGAACATGTACCTACATTGAAACGTATCGAGAGTACTAATGA
CTGTCTATGCACGTCACCTACTAAATAAATGCTTCAAAAGTTTTTTCGTA
GAGGGCGTAACAGTTTGAATCGATCGTCACTGAAAGAAGACAGTAGTGGT
GGAGGCGGTGGCTCGAAACCTCTGTTTAAAAAACCGAAACTTTTTCACTC
TAAGAGCTTAGACGAGACAGCTCTGACAGAGAAACAACAATCACCCAAAC
CGATGCAATCAAATTCGCTCGGCCGCTCGAACGGTGAGCCACGAAGTAGA
GCTCCACTTGCAGGAAAGGATGATTCGTTTGAAACGGAGAGTGGTAGGAA
AGTACATTTCAAGGACGTTCAAAGTCCTAACGGAACTATAGACAATATGG
CTGATGATAAACTTTTTGATGATGGTGTAATGAAAGCATTTGAAGTTGGT
AACTTGAGTATACAAGAATTTCTCGAGTCTCCACACACTTCGCCTGAAAC
AACACCTGATACAACGCTCATCAAGAAACACAAGGAAAACGGTACCCATA
AACCAGGTATTCTGACCAAATCGAAAAGCCTACCCACCTCACCTTCTAAG
AAGGTTTCTCTTTTGGATCAAGCGCACGCTAAAGCTGGCTTTAATACAGA
TCGTTTACCCGCTTCACCGGCTCTGAGACGCCAGGTCCAGATGAGACGTT
CCTCGACTGAAAGCGATGCCAAACCGAAACCATCGTTAAGGAAAAGTCAT
CGTTTCAGTAAATCGTTAGAACATTTAGCACAGCAAGTTTTCGGTGATGA
ATTCGAGACGCAGCTTGAGAAAGCTGTCCATGAAGAACCACCGAAATTTC
CATTAGCCAACGTTGAAGAGGACATCATTGAGCCAACTTCAGCCCCTGTA
GCAGAATCTTCTCCAGCTGTCTCCAGAAACACAAGCGCTAAGAAAGAAAA
ACCAGCTATCGCTAAGAAACCGAAAATGGGACCCCCGGTGGCTTCTAAAG
GCCTTAAACGTGAAGCTTCGATCCCTCCCAAAGAGCCTGTCGAAGGTGAA
TCGGTGACATCCAAAGTTAGTGTTAGCCCAAAATCTGTTCCTGTTATTCG
GCGTAATTTACAACGTTGTCATAGTGCGTCGCAACACACTGAAATGCGGT
TGACGTTGAATAAAGCACAACCAATAGCAAAATCTGTTGATTTCCCGTCA
CCAAATGCTGAAGATAAACAACCAGAGAAACTAGAGAGCTGGGGTAACAA
AATGGATTTGTCGAGTTCACGTACGTCTAGTTTAGGCGGGGAAGGTATTG
GGAACTCGCGAGCTCTCATGGATCCGGTCATTGAAGGAGTTCCGATGGAA
TCACCACAGAAATGTGTGACCGGAGGTAACGAGCCAGGCAAAGACCGCCA
GAGAGCCAAATCTGTCGGTTGTGTTGGTAACCCGATGACGTCAAACCAAT
TACAATTACGATACCAAGATGCCAAATTGATCAAGTCTGATTCGAACGCT
GCCACGTGTGGAAGTGATTTAGATTTAAGTGAAAGTCAGACTTCTATTTT
GGATTTGAATTTCCCTCCGCCGCCCCCTGTTGATCACGAGGAAGAAGTTT
TCCACGAGAGTCCGCATAAAGTGGTGGAAGATGAAATACCGTTCGATTGG
GAAGTTGTTTCTTCTGATGGTGGTTCCGCTGATTTTCAACCTGACGGCTC
CATTTCCGACCCGTTAACCGATACCCTATTTTCTATCGTACCGCTTCCTG
AAGATCCGGAACAATTGAAACCCGCCTTAACAAGAGCTTTAAGTGAGATG
GTCAGCGAAATTATTTCAGCTCGTCATAAACTGAATCGTATTTTAAAAGC
GATAGAGATTCACCAACAGATACTGAAGGATCAAAGTAAACAGATCAACA
CTCAGAATCAACAAATCTCGCAACTTCGTTTCGCTCAATGGGAACAAAAC
ATTGCTTTAAAAAGCGTAAAATTACGACCGAAACAACCCGTTCAAAGTAA
ACCCAGGAGACCGCAAAGTGCGCGGACCTATAGACCACAAAGTCGTGAGA
TAGCCGAGATAAACAGTACACTGGATAGTCTTTTACATCAATGCTCAACC
ATGCAGATATCACCGCGTAGCGACAACGGTGACACAACATTGAAACGTTC
GAATCAGGTCAAACGCTCGAATACCTTTCCGTCTAGAGAACATGTACCTA
CATTGAAACGTATCGAGAGTACTAATGACTGTCTATGCACGTCACCTACT
AAATAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000304_pilon | genome | sc0000304_pilon:216157..218334 - |
Properties
| Property Name | Value |
|---|
| Aaloc | 70-2175:2107 |
| Aaloc | 1-69:2179 |
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