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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000006_pilon:2618986..2628013+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_040267 ID=XLOC_040267|Name=XLOC_040267|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=9028bp|location=Sequence derived from alignment at sc0000006_pilon:2618986..2628013+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCgcaaatttcccaaaatatttctGACACTTTGAGAAATGTAAATCT
TCAAAATCCAACTCTTTCAACGCTTGCTAAGAAAGGAAACGAAAGTGTAA
GTAATCTATTTATATACTTAAATCGATATTTTATATGGATTGTTTAAGTT
TATGGACACAGACCTGCACagaccattttttttttaacacaaGTAAAATC
TCTGGCAATATAGTCTATCAACCGAACCCTTATACTTGTCGAACCGATTT
TCATaatcgaaccatcaaattttatcaaacGATGGGTATTCAATTACCAA
ACTTGATCGAACAGTAATATAAAGTATAAAGTTCGATTGCTTATCGCAGT
TCTATTAAGTTTGATATCACTAGCTCAAATGGTTAACCAGTTTACTGCTA
TAGTGCAACAGCTCTAGCCTAAACGATCCCTAATAATCATTGGATTAGCA
GAAAAGAGTTGTTCATGCGCTCCGAGAATGATTAAATCAAACacatcgaa
catcaatcaatCGAACTAACCGAACTTTACCTGGAATTTCTCggttcgat
gactgttcgatttggttcggtaatcaaacacttattgcggtttgtgtaat
ttacgatgcgcgatccaacgattcatgatgaacgatgcacgatccatgcg
tgatttatgccaatttatgttaattattctaattatgcacgaataagttt
tcataatgctagctacaaacatcatataacaataacgaaaaaaaaattta
aaaaagaaagggaaataatttatcataatcagaatgattaaaataactta
tatcttctgtgtagaaaagccaaaaattgatagcaagagaaagaaaatgt
ttgccTGCATACCTCACtcctttttaaaatgaaagaaaaagccttgacgt
catagaaaagttttggcgcgaaaaatttattataacgcaaactcattttt
gtacgtttattatttttttaagaacagtgaataaaggtaaataaggaatc
attggctacattacttttggtgtgttcttataaaagcctttcaCCAATTG
AATTGCAACtggtgtttttatttatttgatatttttctttgttacaCGCA
CTCTCTTCACTAAAAACGTCTTCccacaacattgtaaattttttttataa
ccctgtctcaatccaatgcatttggttggtttaatcggagaaacattttt
ttaaagaaagaaagcaaaaaggttacaagatattcaattcaaagcatggg
caaaaaagtttatgttttgatttgatttgattgtcgaggttaaaatatat
acacgcatactttacattgatttcccaggaatacaaaagaagaaattaaa
atatgtgaactgtaaatgcataattagaataattaacataacatatgcat
ggatcgtgcatcgcgcatcgtgaatcgttggatcgcgcatcgtaaattac
acaaaccgcacTTATTGTTCGATTAATTTCAAttgagttcgattagttca
atatttcaaaaatagttcaaTTAACATTGCCTGGAAAATCTGGGACAGCA
TATATTTGATAGGGGTACTCagactgggcaggggactctacttcaaataa
ttttttatgattttaagaGGGACGTTCATTTCatttggggggggggagtt
TAAAAGAAGAGGGTGTTTATTGAATGATCTTTTAACCAAGATCAATTTAA
TAAAGTGGATTGGTGGGGAGGCGTTTATTCAAGTGGGAGTTTATTCAAGG
GGatgtttgaaaaaagtgaaaaaagggggcatttaaaaaaggagcattta
tttaaaaaatggcagggaaaatattttacaattttcattttcaaaacaga
aGTCATGTCAACCTTTTAGGACAAGATAGGCAAAGTTTTTTCATTgagat
gaaaatttcaatttttacccATATTTTACCCTTTACATAGCAATACCCCC
TTAACTGGCAAAGccccttaggaaattcaaacttttaacacccccttgtT
TGGGTTTCATCAAGATTTGagaccccccccctaaatgtagTGGGTTAGAA
Actaggcggcaatcaaaaatatgttccattcgggtcctaaaacatcttca
aatccagtcagtcggtcggtcggtagtaaattttgtcagatttttaagat
ctagtaaatcccgataaatcaagtcggcaatcaacagaatcttatgttgc
catctttaatttgccaaactaaatgtgTGCGCGCATGTGTTAACCTTAAA
GTGGCCCTTATTTCGGCCCCCAGGGCCCTACCGCGTCGCtgaattttgac
atgaaaattacaataagggtacatgaaaaaacttaaacgggactcaatgt
gggttaagtaaacaaaaaataatgattcaaagacaAGCTCCTTTTGCCCG
TGCCTGCCATTATGGGAAAGATCTGAACCTGAGAACAGCACCCaaaaaaa
TCCAACAATTTTACCAACTTTCCGAATAaggttttcttgtaaataaacag
GCGGTCGGACGAcccgaatggaacatatttttgattgcctcCCTATGAAC
TTCTATCTAATTTCTATCAtccttctttaaaaaagaagaagaaaagaatt
tGCAATTAAGAACAGGGTTGTAATAGcttttttttcagcaaaaattttca
gaGATCACATAATGACTTAAAATAGGAAATCGATCAGAGGTAGCAGATAA
GTATAAGAGGTATATTcgtatttctcattttttgtacAATAATAATGTAT
GATAAACAGTTCTTTTGAAATTACATTTCAGTTAATTCAAAGATTTCTCA
CGGAAAACCTTCAGATAAGTGGAGATGAAGAGAACAAAATGCAAAGTCAA
CTTTACATTGGtgattatttctttatttttaatttggATGAGTGGACCTT
GACAGCCTTGGAGCACAAAGTGAAAGGATTCCCTGAAAACATAGAAAGAT
CCTGATTTCAATGTAAAACTTTGCTCTTTGttagttttagaatttttgtc
tGGGCTCGCCaaaaaaaTAGCTAACTCTTTTCTGCTTTGGCAAGAGATCC
AAATTACACTTACATACCCCTTCTCATAATGTTTCacaattataaaattt
ttgttgaaaaaatgtttgtcttttcaTCTCTGAAACATTCTTTGTCTTTT
GACGTGATAGAGAATTCCCAAAAGGTTTTATACGTAAAGTAATTGCTTTT
TCAAGAGTTCTAAGccaattaaaaattaaaatacgagCACAAAAATATGT
GGTTTGTCCCCTTGCGACCAAAACCGTTGGTGAAGCCATCACCATCAtaa
taaaaatcagaaatattTGATTTAGCAAACAGGTTTTTGTTGCCAGATTT
CACTTAGGCACAGATTTTGATTAATTCGTCTCAGACGTCTGAGATCATCT
AAATTTCATCTCAAATCTTGActattttttccttaaaaataagGTCTCAG
ACGTCTCAGATCATCTGAGATCTTTCGACATCATCTGAGGTTCATCtcaa
attttgactatttttttccttgaaaacagCGTATCAGATGTCTCAGATCA
TCTGAGATCTTTCGAGATCatctgaggttcgtctcaaattttgaccattt
ttttccttgaaaacagCGTCTCAGATCATCTGAGATCTTTCGAGATCATC
TGAGGTTCATCTCaaatttgactatttttttccttgaaaacagCGTCCCA
GACGTCTCAGATAACCTGAGATCTTTCAACATCATCTGAGGTTTATCTCA
AATTTTGACTATTTATTTCCTTGAAAACAGCGTCTCAGACGTCTCAGATC
ATCTAAAGTCTTATggtcatttctttcttttaaatgaattttttccaaaa
attgtgaTTAGCCTCAACTGTTTGTGAAGATAAATGAGCTAATTTAcagc
aaatataaaaaataaaaacatattaatGGTTCGAGACAATTACAACTAGA
GTTATTAAAATTCGAAGCGAAAAGATCTAAAGGTTATAATCATTTTGACA
TTGAATCAGATgatgttttaaaacttacaaaatagctaagataggagaaa
aatatcaaatagtCAAAATTTGAGCCCAACCTCAGATTATCTCGAAAGGT
CTCTGACGATCTGAGACGCTGTTTTCAAGGAAAGaaatagtcaaaatttg
aaatgaaccTCAGATGATCTCGAAAAGTCTGAGGGCCCTGAGACGTCTCA
GATGCACATTTTAAGGACAGAAAGACTttaaacacaggaaaaaattttcg
atttccaaggttgaaatttcaagttttcttaattggaaaaaagataaaat
ccaatggaaaatccaacctggaaatgtgggacattctccaaggttggaaa
ttttgcattttccctggcgtggaattttcaaaaatctaggttgaaaaaag
ccaaaatccaaagtaaacaaacttggaattttcaaaaatcaagcaTTGaa
taaagccaaaatccaagctaaaaaaggttggagttttcaaaagctcatgt
tgaaaaaagccaaaatccaaaaagtgatggcagagatgtggaaaaagaga
TCTCAAAggcttttgtttttgtgaacattcactcgctagcctaggctcga
tggctcccagTCAATCTCTCGTCATttttcgcacagatacgtggttgatc
ttatatcactcacacagctcagcagggcaccaTTTGAAACAAGTACCTTC
ACTGTGCGagctcactgcgattgaccgaggccgctccgaagggACGCCTC
ACCTGAAGGAAACTTACatcttgactgctcacattatagccaAGTATCtg
gttagctatacatcaaaacagttttgagcaaaaaatcgcttgtggttttc
acAAAGGACATGCGCATAAAATGGTTACAAAAACGTAATTttcacatgga
tttttaacattttccaaacagtttggagaaacaaaaatttccaagccaaa
aagtctagttttccaattgacagagtttcaatttcacaaaaatgtaattt
tcacatggatttttaacgttttccaaactgtttggaaaaacacaaatttc
caacccaaaaagtctagtttttaaaccagccttggaaaattgtcatttct
acatgggtttttttcactagatttttcaagggcattggtttattctacaa
aacatATATGggaaatttacgttttccaaatcagcttaaggtaatcgctc
aaatttccaaacttcaattataaaaccaaaatttccaacccaaaaatgaa
aaaaattttccagacGAATTGTGCAAAATCCGTGCTACACTCCCAGTTTT
CCAGGCTAAGTCAGGGCTAAAGTTTGCTTTGTACATCTCTTAGAAAATCT
TCAATAAGTTGTGTagcaaaaattgttcaaaatatctttctaaatcaaaa
cttttttctttttttttaaatatctaacTGCTCCTTACTAGTCATTAATT
ATGATAGTCATTTCAATAACATTATTTACATTATTACAATagtatttttc
ttttcagcCTCTTTTTGGGGATTTGCAGATGTAGTGAAAACACTTCTTGA
GAATGGCGCAGGTATTTTTATGTAAAGATACCATTGTTTGATTTTATTAC
CCTAGACATTTCCTAGCTCACTACGAATAAGTTATCCAAGAATTCAGATC
AGGAatattacattgaaaaaatcATCTATAGTTCTTtgacaaaatatatt
ttaataatcCTAAAAACATTCCTCACTTCTTCTTTTAATAATAAAACATC
CATTAAATGCAAAGATTAAATTATCTATTTCCTCTGTTGGTAAGTTTCTT
TTTGCAAggtttcgatatttttttttccAGATGCAAATGCACAGAATCCT
GATACATTATGGACACCATTACATGCAGCTTCTTTTCAAGAACATGGAAA
AGTATGATCTGATCTAGTACTTCAGTTTCTCTTCaggaatgggcttttcc
agtaaaatttgaatatgggcggtggatataatattttttggaaatttacc
ccccagacattgtgaattttgaccctcGAACAGCAGGTCTAcccccaccc
cctcccccGGCcactcaaacagagcaaaattaaaCCCCATAACAGAACCC
GCCGGACAagacaaattttgtagatttttcactacccacCGGACACTATA
TTCTCCACCCGCCTCCCCCATGTACAAACATTTTCTGGACAAGAGCCCAG
TCTtcatctatttttattttacataatCCAGGGGAATTGCAGTTGACtgc
tttttttgaaacttttttaaatactgttttcttttGATAGGTGATTATGT
TACTACTGCAGAAAAAAGCTGATCCTTGGCTTGAAGATTTTGAAGGAAGG
TGGGAGAATTATTGAATAtgtataccgggtgcaccaaaaaaaagtataca
actttgtcaaGATATTGAGAGCTTCAGgattcaaactttttgtttattct
ttttttatcgcatagaggatgctctaacttgaatttttagctatcataca
ttaggtttgaaaattatttttaaaaaaactgactttttttaatgtcgaaa
tttaaaaaaaatcatcaacttttatcttgacacttaccttctttacacat
aaaaataccgaAAAATGCAGCTCTGTTCATCAAAATTCGTTACGGAATTT
AAgtatatggtaaaacaagctattcccatgtgggatAACATTTTTGCAAA
agctgaaaaaagtttttggaaatctccaagagaggttttgatgttatgtg
tgtgtgtgctatgtgagaaattttttgaaaaaatagatcattATTTCTCG
ACTAGTttctcaaagaacttgggtttgcattgagtttgcttgtgttggaa
atgtttatgacgtgtaaataagatggacaagctgttggcaaaatataagt
tAAGAGAAAATAGAaccaaaaaaacaatgaaatcatgtttttgtcttttt
tgtcttatttatagcgtgattgcagtttttaatgatttcttaaaatttcg
acatggaaaaaaagtcagtactttggaaataactttggaactacttttTC
GAATTTAATGtataaaagctcaaaattcaagttagagcatcctctataca
ataaaaaaagaatgaacaaaaaaattaagtcctgaagctcacaatatctc
tataaacctgtatacttttttggtgcacccggtatgtAAAGTCATGAAAA
TATTGACCAATTATTGATTTGTTCAGATTAACTTCGTCTTCAGGTGGCTT
AAAACTCGATTATCCCGGGAGCTTTATGTgttgttatcatttttaataaa
gtttttatttttatcttacttttaGGTCATCTGTTGATTTTGGCTCAGCC
TCAGACAAAATATGGCCACTTTTTGCTTGTAAGTTGATTTACCTGCCAga
aaacattcaatattttcGGGTTGTCCTGTTGCCTGGCTTGGGTTCGATAG
AGGTCGGAAAAGACTGTTGGTAAAACAGTATGAAAATGAACAGTCacaaa
gactttttttttttcatttagcaTGTGGATGCACAAAGACTTCAAGgaat
gttttgattgaaaaaggTGTCATTCGAAAGGTACAAGTTTTTAgtacatt
tttaaaataaaaagtcaaatttattTACACCGTAATTTATTATTTAGAAT
AAAACAAGCATTTAACTCAAGGAATTTCTTCATTAAAGTATTGTCAGTTT
GCAATGGCTTTTTGGAAGAACAAagagattttcgatttttggccaCTTTA
GGCATGACGGGTGacgtcattaaatttttttttgttaatttttaccTTTA
ATGTCAAGGAACTTGTTTGAACTTATGGTACTTACCTTAAGATAGACGAC
CTTGAATTTTTATGGCTATTTTTGTCTATAATGTTTGCTCTTCCTATCTA
CAAAGAGTGTCAATTGGTTTATATCTTTGTTCTAGAAAATTGATGATGGC
AATGTCGGACAAACAGGAAATCGAACAGAGAACAGTCTTCGAAGTGGAAA
TATGAACAACTTGGTAGGATGTCTGTTTTAACTTGCTACTTGTAACCCTG
GCAttttttttCTTAGACCGAGCAATGTGGCTTGCTTTTTAACAAGTAGA
GAGAATAGACGTGGGACAATTGTGGTAAACTTATATAACCAAACAATAGT
CTTACTAACATGTTACTTGTAACCCTGGCATTTTTGCTTAGGGCGAGCAT
TATGTGTGCTTGTGCTTGCTTTACATCCAATGGGGATAATTGTTTCAAAG
TTGTACTACAAAACAACAACCCTACTAACATGCTCTTTGTAACCCAAGTA
ATTGTGTTTAGGTATAGCATTTTAGTTTTGTATTTGCTTGCCTTTCAACA
AATAAGAGAATGGGCGGTATAACATAATTGTGTTTAACTTACGCCAGTAA
ACAAAAACCATATCAATATGCTCCTTTCGATTATGTACCCCGAAAGAATC
AATGATTCCAAaggatttttgtttgtttgtgaaGCTGTTTGAAGCCCACT
GATTGCTGTTTGAGACGTTTAAGGATTTTAACTGAATTGTAAACAAAATG
CTTCTCGAATGAGTAGACTGGTCGAAAGAAATTAGTTGTTGACACATTTT
GTGATCTAACgtatatattttctttaccCAGATCAATTACGAAAATCGAG
CACTCAACATTGACAAGACAAATGGTAAGCTTTTAGATGATTTAGATTTA
GTTCATCCTGAAAGTTATTATTGATACCTATCCACGAGTCCGTTATATAC
CTATAAAAGAGAcgattttgtattttgatgtttttaaccTACTCTGTCCT
GCTCTGTCCTACTTGGAACCCACAGTGGAGGAAAAAAGGTTCTCTTCCAG
CGGCACATTCTTCTTCCCATTTTATTATACATCTTTTTTGACAATGAACT
AATATCTTTTCTACATTGTACTTTTAGAACGTTCAGCATATGCAGCTTCT
ATTGATGGAGATGTTTTAGCAGGAGATGATTCAAGCATGAAGACTGGGGA
CCAACCTTCGTTCAATGCTTGGAGATAA Coding sequence (CDS) from alignment at sc0000006_pilon:2618986..2628013+ >XLOC_040267 ID=XLOC_040267|Name=XLOC_040267|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1386bp|location=Sequence derived from alignment at sc0000006_pilon:2618986..2628013+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCgcaaatttcccaaaatatttctGACACTTTGAGAAATGTAAATCT
TCAAAATCCAACTCTTTCAACGCTTGCTAAGAAAGGAAACGAAAGTATGG
CgcaaatttcccaaaatatttctGACACTTTGAGAAATGTAAATCTTCAA
AATCCAACTCTTTCAACGCTTGCTAAGAAAGGAAACGAAAGTTTAATTCA
AAGATTTCTCACGGAAAACCTTCAGATAAGTGGAGATGAAGAGAACAAAA
TGCAAAGTCAACTTTACATTGTTAATTCAAAGATTTCTCACGGAAAACCT
TCAGATAAGTGGAGATGAAGAGAACAAAATGCAAAGTCAACTTTACATTG
cCTCTTTTTGGGGATTTGCAGATGTAGTGAAAACACTTCTTGAGAATGGC
GCAGcCTCTTTTTGGGGATTTGCAGATGTAGTGAAAACACTTCTTGAGAA
TGGCGCAGATGCAAATGCACAGAATCCTGATACATTATGGACACCATTAC
ATGCAGCTTCTTTTCAAGAACATGGAAAAATGCAAATGCACAGAATCCTG
ATACATTATGGACACCATTACATGCAGCTTCTTTTCAAGAACATGGAAAA
GTGATTATGTTACTACTGCAGAAAAAAGCTGATCCTTGGCTTGAAGATTT
TGAAGGAAGGTGATTATGTTACTACTGCAGAAAAAAGCTGATCCTTGGCT
TGAAGATTTTGAAGGAAGGTCATCTGTTGATTTTGGCTCAGCCTCAGACA
AAATATGGCCACTTTTTGCTTGTCATCTGTTGATTTTGGCTCAGCCTCAG
ACAAAATATGGCCACTTTTTGCTTcaTGTGGATGCACAAAGACTTCAAGg
aatgttttgattgaaaaaggTGTCATTCGAAAGcaTGTGGATGCACAAAG
ACTTCAAGgaatgttttgattgaaaaaggTGTCATTCGAAAGAAAATTGA
TGATGGCAATGTCGGACAAACAGGAAATCGAACAGAGAACAGTCTTCGAA
GTGGAAATATGAACAACTTGAAAATTGATGATGGCAATGTCGGACAAACA
GGAAATCGAACAGAGAACAGTCTTCGAAGTGGAAATATGAACAACTTGAT
CAATTACGAAAATCGAGCACTCAACATTGACAAGACAAATGATCAATTAC
GAAAATCGAGCACTCAACATTGACAAGACAAATGAACGTTCAGCATATGC
AGCTTCTATTGATGGAGATGTTTTAGCAGGAGATGATTCAAGCATGAAGA
CTGGGGACCAACCTTCGTTCAATGCTTGGAGATAAAACGTTCAGCATATG
CAGCTTCTATTGATGGAGATGTTTTAGCAGGAGATGATTCAAGCATGAAG
ACTGGGGACCAACCTTCGTTCAATGCTTGGAGATAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000006_pilon | genome | sc0000006_pilon:2618986..2628013 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 595-693:8930 |
| Aaloc | 550-591:8632 |
| Aaloc | 472-549:7936 |
| Aaloc | 415-471:7524 |
| Aaloc | 361-411:7327 |
| Aaloc | 301-357:6291 |
| Aaloc | 232-300:5833 |
| Aaloc | 178-228:5510 |
| Aaloc | 97-174:2782 |
| Aaloc | 1-96:1 |
|
