|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000304_pilon:92546..96714+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_040266 ID=XLOC_040266|Name=XLOC_040266|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4169bp|location=Sequence derived from alignment at sc0000304_pilon:92546..96714+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGGAATTTTGTTATCTAAAGTTTGGTACTCATTTTTTGGGAGCAAAGG
TATATGTTCAAGTTTGTTTATTTCAAGAcaacacatatttttttggctgt
GGTTTAGTATGGAGAACATCTGTTTTATAATTTAGAGTTACTACTATAAA
CTattgttacaagaaaatgaTGATATCAATTTCTTGATTAGGTAGGGAAA
TTCAGTCGCAAGCTGttataaatttcatttcaatcatttctttctcccaa
agttttaaaatcttaCATTACAtacattttatgaaatttttaattacttt
cTTGTTTCTTTTAATTTCAGAACATAAGGTCATCATAGTAGGCTTAGACA
ATGCTGGCAAAACAACCATTTTGTACCAGTTGTAAGtaaagtaaaatttc
atttcatcttGTGACCATTCCCTGTCTGCCAAGCTCTTTTTGAAACCAAC
TCTTACATTTTTGGGCATTAGTTGTGTTCCCTATTGTATCTGTTGTTTCT
GATCATCATAGTTATTATATCTTTGGACTCGCATTCTATTCAGCTTTCGA
TTggtgtaaaaataattttcgtagtaccttttttatcaaaagtagcaatt
tttcttcttcgtttttcttcgctttcttggcagaattttGGAAAACTAAT
AAGTGGAAACTATGAGCGCattcaaatatctttccaacgataccaaactt
tTTATTATGCGACAATTGGTTGGAAAGTTATGGTCAAAAGTAATGGCCAA
AAGTAAAAACACCGCACACCTTTTTGACACAGACTTAAATAAGTTATAGT
ACTCTGGGCACGTTCCACAGTATGATAAACATGTTATCTTTCATTGTAAA
GAGTAATTTGTTACATACAGGAAATGATTTTTCATTCAGTTCATTTGATA
TTTATCTTTGTTTAATCTTGTCTTTGATCTGTTTAATTGATTACTTAATT
ACCTGTTGCATGTTCAGCAAATGACTTCCTAATTACATGCTGCTACCGTG
TATTGCTGATAAAACCTATTTCCCACAGTgtgagatttttctaaaaataa
taaaaaatgtaaaaactgTCAAAAGTCCCCtttattgggccattccattt
tatatccatacaagggggggggctggacgaacatttccagggggtataac
GGAGGAGTATTTGTCCATTTTTCCAGGAGATAAaagtttattctaaaatt
tctaggggttaaaagactgattttagttcgtccacccttacTTTTAAGGT
ATGTAAAGAATTTTACAAGggctcttttgcaaattttgccattttccagg
ggataTCCATTTCTAAGAATCTTTATTTGTcttaaaaaggttcgtccacc
cccccccccctgtatggacatttaatggaacagcccattgcAGTGTTACA
ACGTTTCCATCTGTAGTAGAAAGAATTCCATCTAGTTGAGATACAAATGG
ATGATTTCCGCCAAGCGAGAGAGTTTTTGGTGGTTAAATGAGCCGTTAAT
CCCAAAATTTCTGTCAATATTCACAGTTGCAACACTACCATTgggttaaa
aaaaaggaagtgTTATTTTTTGCGAAATCACTGATTTGGTTATGAAAATT
GTGCCCAGCTCGCATTTGGACTTTTAATGGTTAATCACACCCTTTAAAgt
aataacaattttttttctcattataGTTTGATGGGAGAGGTTGTTCAAAC
CACACCAACCATAGGATCCAATGTCGAAGAGGTTCGATCATtacttttgt
ttacaaaagaaaaacatgtcaattttttcttatacACGGTGGCCATAAAA
ATCTAAGAAGAATATAATAATGGAAATTCTTCATGattttatgaaagttt
ttaCGACCAATGGTCTGTCAACGTTAAGGGGGCAACGACGGCTTGAATTG
ACTTTTTTGCTTGCGTCAGATGAATCTCATATGATTTCTTTCACTAGGTG
AGGTGGAAGAATATCCAATTTTGTATGTGGGATATCGGTGGTCAAGAATC
CCTCAGAAAGGATTGGTCCACATATTATGCTACTGCTGAAGTAAGAGTTT
GTTATAATCTTCCTTGTTGAGGATCCTAATGTTTAAATGCTATCCGAAGG
GCTGCTCCCAAATAATGCATTTTTCAGTTCACGATATCTTGAGTGGTTTA
GACTGATCCAAAAATTTTCGGAAAGAATAACTTAGTTATACAAGAAATGT
GGCTTGGTCTTATTTTCATGTCAACAAGATATCTTTAGAGCGTTATATGA
CAAACTTTTTATGTGAGACCGCGAGCTGAGGAAACAAAAATGGTATCCCC
AATcccttattttccccatttcttGATGACCACACCCGTTAAATATCTGG
TTATAATTAGCAGATTGAACTTTCTCTGAATTATGATcttatatttcttc
ttttttttttcctaGTTTCTAATCTTTGTGATTGATAGTACAGATCGTGA
AAGGTTACACGTATCCAAATCTGAACTCTACAACATGCTGGCTAACGAGG
TAACTCGTGCTTTGTGGTTCATAGTTATACTTTCATAGCAGTGATGTCCA
TAAGACTGTACTTATCCAATTAGCTTCACAAAGTCCCCCAAATCAAAAAG
TCGCTCACTTTTGGATGTAACGCAATCTTTGAATAACTTGATTCAGCGTC
ATAAATTACATCAATTTAACACTTTTCTTTATATTATTCTATGGTATTTC
AGGAACTGAGGCATGCCAGTTTACTTGTATTCGCCAACAAACAAGACGTT
AAGGTAAGCATAAATCTTCCATTTCGTAATTATGTTCACTTAAGTCAGTC
GTTATCATCCTCTGGAGTCACCTTGAGTCATCATTTTAATTATAATATAA
AAGGTAGTTCTTGAGTATGTCCGTGACTGTACGAGACTGATTCATCTGAC
TAGAGAATACTCAGAACTCTGATTAAATGATCAAGTTAAATCTGCAATAT
TTCAGAATTTCCATATATTTATCagcagacacgtgtttcgtaCTTCCCAG
AACTCGTCAGTGTGGCTCGGGTAAACGAGCATAGACTGATGTTGTCAACA
GAGAGCTCAAAAGACCAAGTGATGAACTTTTCATAATCGCTTGTAAAAAG
CGGGGTAGCAAAGCTTGACCCTCAACATAGTTGATCTAGAGTGGTCAAAG
AACCAAAGTTCTATGCATGATATTCtctatatttcttttcttttccaggG
TTCGATGACGATGTCAGAGCTGTCTGAACAATTGAATTTGACGTCCATAC
GAGACCACGGCTGGCATCTACAGGTACAATTATTAGATATACGGAATAAT
TATGAAAAGTAGGAAACGGATACTTTTTGTCCcaataaacttttgatata
tatttttcaaaatagataaaatttgaataaaaacaaatcaataaaataaa
tatacttcaattctataatTTCAAGATTGGCTCAAAACATATGGAAAGTA
TCGGaactaaagtaatttttattaaaattacaaACACAAATAACTTTAGT
TCGAATTTGAATTCGAGTGCGATTTTGTGCTCagctcgttggaaagataa
tctattattgaataattatttACTTTTGAGAAATGTTTACAATGATTATG
CTCCAAGTGTGAAGATTCACTCATGGAAAATTTGTAATTATAGCATGATT
CTTTTAATATTCTCATACTATGATATTCCACTCAGGATTACCTTTTCAAC
GAGCCTACCTTTTTAATCGCAATGTCTGATCACGGGTTAAAATTCAATCT
AAAGTTATCGGTATTATTAAATTTCTTGATTTAAAAGGACTAAAATAGCG
GACTTAAGTTTCTTGGGTAAATCAAATCTTTCTCGGTTGAAAAGATAACA
TGAAACATAAGTCAAAGATCAGATTATcatttgaatttctttcttgTTCT
AAACTTCTAtataatttatctttttttctttttttaccttcAGGCATGCT
GTGCGTTATCTGGAGAAGGGTGAGTTCAAAGTTtttgtctttcttctttc
tacTTTACTACTGCTTTATAATTTATACgaatttcgaattatagagagat
tcgATTAGTAGAAgatcgaattagcgagagcccattgcattgtttttgat
ttatgaCTTGATTTACTTTTTAGGCTATATCAAGGTTTGGAATGGCTCGC
GCAAAGGGTGAACAAATGA Coding sequence (CDS) from alignment at sc0000304_pilon:92546..96714+ >XLOC_040266 ID=XLOC_040266|Name=XLOC_040266|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1080bp|location=Sequence derived from alignment at sc0000304_pilon:92546..96714+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGGAATTTTGTTATCTAAAGTTTGGTACTCATTTTTTGGGAGCAAAGA
TGGGAATTTTGTTATCTAAAGTTTGGTACTCATTTTTTGGGAGCAAAGAA
CATAAGGTCATCATAGTAGGCTTAGACAATGCTGGCAAAACAACCATTTT
GTACCAGTTAACATAAGGTCATCATAGTAGGCTTAGACAATGCTGGCAAA
ACAACCATTTTGTACCAGTTTTTGATGGGAGAGGTTGTTCAAACCACACC
AACCATAGGATCCAATGTCGAAGAGTTTGATGGGAGAGGTTGTTCAAACC
ACACCAACCATAGGATCCAATGTCGAAGAGGTGAGGTGGAAGAATATCCA
ATTTTGTATGTGGGATATCGGTGGTCAAGAATCCCTCAGAAAGGATTGGT
CCACATATTATGCTACTGCTGAAGTGAGGTGGAAGAATATCCAATTTTGT
ATGTGGGATATCGGTGGTCAAGAATCCCTCAGAAAGGATTGGTCCACATA
TTATGCTACTGCTGAATTTCTAATCTTTGTGATTGATAGTACAGATCGTG
AAAGGTTACACGTATCCAAATCTGAACTCTACAACATGCTGGCTAACGAG
TTTCTAATCTTTGTGATTGATAGTACAGATCGTGAAAGGTTACACGTATC
CAAATCTGAACTCTACAACATGCTGGCTAACGAGGAACTGAGGCATGCCA
GTTTACTTGTATTCGCCAACAAACAAGACGTTAAGGAACTGAGGCATGCC
AGTTTACTTGTATTCGCCAACAAACAAGACGTTAAGgGTTCGATGACGAT
GTCAGAGCTGTCTGAACAATTGAATTTGACGTCCATACGAGACCACGGCT
GGCATCTACAGgGTTCGATGACGATGTCAGAGCTGTCTGAACAATTGAAT
TTGACGTCCATACGAGACCACGGCTGGCATCTACAGGCATGCTGTGCGTT
ATCTGGAGAAGGGCATGCTGTGCGTTATCTGGAGAAGGGCTATATCAAGG
TTTGGAATGGCTCGCGCAAAGGGTGAACAAATGAGCTATATCAAGGTTTG
GAATGGCTCGCGCAAAGGGTGAACAAATGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000304_pilon | genome | sc0000304_pilon:92546..96714 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 496-540:4125 |
| Aaloc | 469-492:3944 |
| Aaloc | 394-468:3199 |
| Aaloc | 343-393:2703 |
| Aaloc | 259-342:2416 |
| Aaloc | 166-258:1948 |
| Aaloc | 112-165:1678 |
| Aaloc | 52-108:323 |
| Aaloc | 1-48:1 |
|
