XLOC_040242 (mRNA) -

Overview
NameXLOC_040242
Unique NameXLOC_040242
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000304_pilon:147503..149585-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_040242 ID=XLOC_040242|Name=XLOC_040242|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2083bp|location=Sequence derived from alignment at sc0000304_pilon:147503..149585- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGTGAAATCAACAATAACTGCTACAGGCTACGGTGTATTAGCCCATGA TGGACCATCTACAAACCAGCGCCCAGATTTTACTCATTCTTATGGATCTT TGGATAATAATTTTGCACATAATAGTACTTCAACTACCGACAGGTATACT TTGCTTAAAATTAGAATGTCTTTTTCCAAAAATCAAAAAGTTTAGTTAAC ATATGTAAAATAATCAGATTGTAAGCGTTTTTACATGATCGTATTATATG CACTTTTTTGATGTTAGACATTTGCTATTGATTTTAAAGCTAGAAAATAG GGCTTTTGAGGCGTAATTTTCTTTACGCAATCCTACCACTTTTCAATCGT TAGGGCAAAAACTGTCCAGATACATCTCTGTATTGCCAGGTTTCTGTTAA TATTCACAAAACAACACTGCTAACATGATAAATGATTCCTCTTTCTTCTT TTTAGTTACCACCGCTGGTTTGTTGAAGGTCTAGATAATGAATATGAGAT TGAGTCTGCTTATACTGCTCATGGAACACCCAGACAATCAAACCTTGGCA ATTACCAAGATTTTTATAATGATGATAGCTACATCACCGACAATCCTGGT AATAAATAGACTTCTTAAAATTAATTTTTAAAAGATCAAAGTATGTTTGT ATTTCTTTTCCTATCAGGAGGTTCTATACTTCCAAAAAGTCTTTTTGAAC AAAAATGTTTTTCAGTGGTTTTTTATTTTTAGATATATCAGAGTTTCAAT TCAAAATTCGTTTCATTTTCTTTGTTTCTCTTTAGACTCATCACTTCTGG ATCCTCATTATGTGGACAATCTGTCTGGGGAAAATCAACATTTGATTGAT TCATATACCACAAACGGGCTTGCCTCAACTCCACTCGTAGCTTGGAATTT AACAAACTTGCTTTTAAGTACAAGTTTATTGGCATTCCCATTCATTGTGC GGCAAGCTGGTTATATTGTCTTACCAATTGCATTCTTGATAGCAATGATG CTGAATTATACTAGTAATATACTTATTGATTTGATGTATGAAAATCTTCC TGAATATGACAACCAAAGAGTACGTGTCCGAAAACATATCACTGAAATAG GTAGAGAGGTCTTCAACTCTGAAAAAGGAGCAAAGTTAGTTCACGTGGTA CAAATCATAGAAATGTTATGCATATGTATTTTGAATATTTGTGTCCTTGG TCAACTTGGACATGAGATATCAAACTATAATGTTCAGCTGTGTACCGCTA TTGCTGCATTGTTTGCTTTTCCAACATTCTTTATCCGGAAGCTTGCCATC ATTGGCTGGTTACAGACCATTGGTGTTATATCTTTAGCAATTGGTATAAT GCTGATTCAAGGCTGGTGTTTGGTACATGCTGAAAAGTTCAAAACAGATA ACATACCTATCGTACAATGGCACAAACTACCTATAGCTATTGGTGTTGTT GTTTATGCTTATGGTATACAAGGTGTGTTGCCAGGAATGGAAGAACAGAT GAGAAAACCGCAGCAATTTGGAAGAGTCATCAACTGGACTTTTAGCGTCT CCTTTATACTACAGTGTGTTTTCAGTTTAACCAATGCCATGTATTATGGA GAGGAAACAGCACAAGTTATTGTGATTGATATGAAAGACCATTTTGAATT GGGAATCACTTCAGCATGTTTTATTGGGATTTCTATATTATCACATTTCT CTTTACCGACACTTGTGGTTATGGAGAGTTTGGACAATGCTATTGTAAAA ACTTCATCATGCTGCCCAACCCGTCAGCAGACTCTACACACATTCCTGAT GGTGTTATTAAGAATCGGTATCATTGCCTTGTGTCTTGGATTAGCTCTTG TTTTACCGTATTTTGCATATTTAATGGGATTCATAGGTTCTTCAATAACC TTAACAATGTGTCTGATTATTCCCTGTACGTTTCATTTGAAGATGAGATA TGATACATTGAGGTTGCACCAAATATGTTTAGATGTTGTTATCATCGTAT CCAGTCTGGTTTGTCTTGGTGCTGGCTCTTACTTTTCTTTTGAATCTATT TATTATGATTGGGTCAATGGTTCTTATAATTGA

Coding sequence (CDS) from alignment at sc0000304_pilon:147503..149585-

>XLOC_040242 ID=XLOC_040242|Name=XLOC_040242|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3168bp|location=Sequence derived from alignment at sc0000304_pilon:147503..149585- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGTGAAATCAACAATAACTGCTACAGGCTACGGTGTATTAGCCCATGA
TGGACCATCTACAAACCAGCGCCCAGATTTTACTCATTCTTATGGATCTT
TGGATAATAATTTTGCACATAATAGTACTTCAACTACCGACAGATGGTGA
AATCAACAATAACTGCTACAGGCTACGGTGTATTAGCCCATGATGGACCA
TCTACAAACCAGCGCCCAGATTTTACTCATTCTTATGGATCTTTGGATAA
TAATTTTGCACATAATAGTACTTCAACTACCGACAGTTACCACCGCTGGT
TTGTTGAAGGTCTAGATAATGAATATGAGATTGAGTCTGCTTATACTGCT
CATGGAACACCCAGACAATCAAACCTTGGCAATTACCAAGATTTTTATAA
TGATGATAGCTACATCACCGACAATCCTGTTACCACCGCTGGTTTGTTGA
AGGTCTAGATAATGAATATGAGATTGAGTCTGCTTATACTGCTCATGGAA
CACCCAGACAATCAAACCTTGGCAATTACCAAGATTTTTATAATGATGAT
AGCTACATCACCGACAATCCTGACTCATCACTTCTGGATCCTCATTATGT
GGACAATCTGTCTGGGGAAAATCAACATTTGATTGATTCATATACCACAA
ACGGGCTTGCCTCAACTCCACTCGTAGCTTGGAATTTAACAAACTTGCTT
TTAAGTACAAGTTTATTGGCATTCCCATTCATTGTGCGGCAAGCTGGTTA
TATTGTCTTACCAATTGCATTCTTGATAGCAATGATGCTGAATTATACTA
GTAATATACTTATTGATTTGATGTATGAAAATCTTCCTGAATATGACAAC
CAAAGAGTACGTGTCCGAAAACATATCACTGAAATAGGTAGAGAGGTCTT
CAACTCTGAAAAAGGAGCAAAGTTAGTTCACGTGGTACAAATCATAGAAA
TGTTATGCATATGTATTTTGAATATTTGTGTCCTTGGTCAACTTGGACAT
GAGATATCAAACTATAATGTTCAGCTGTGTACCGCTATTGCTGCATTGTT
TGCTTTTCCAACATTCTTTATCCGGAAGCTTGCCATCATTGGCTGGTTAC
AGACCATTGGTGTTATATCTTTAGCAATTGGTATAATGCTGATTCAAGGC
TGGTGTTTGGTACATGCTGAAAAGTTCAAAACAGATAACATACCTATCGT
ACAATGGCACAAACTACCTATAGCTATTGGTGTTGTTGTTTATGCTTATG
GTATACAAGGTGTGTTGCCAGGAATGGAAGAACAGATGAGAAAACCGCAG
CAATTTGGAAGAGTCATCAACTGGACTTTTAGCGTCTCCTTTATACTACA
GTGTGTTTTCAGTTTAACCAATGCCATGTATTATGGAGAGGAAACAGCAC
AAGTTATTGTGATTGATATGAAAGACCATTTTGAATTGGGAATCACTTCA
GCATGTTTTATTGGGATTTCTATATTATCACATTTCTCTTTACCGACACT
TGTGGTTATGGAGAGTTTGGACAATGCTATTGTAAAAACTTCATCATGCT
GCCCAACCCGTCAGCAGACTCTACACACATTCCTGATGGTGTTATTAAGA
ATCGGTATCATTGCCTTGTGTCTTGGATTAGCTCTTGTTTTACCGTATTT
TGCATATTTAATGGGATTCATAGGTTCTTCAATAACCTTAACAATGTGTC
TGATTATTCCCTGTACGTTTCATTTGAAGATGAGATATGATACATTGAGG
TTGCACCAAATATGTTTAGATGTTGTTATCATCGTATCCAGTCTGGTTTG
TCTTGGTGCTGGCTCTTACTTTTCTTTTGAATCTATTTATTATGATTGGG
TCAATGGTTCTTATAATTGAACTCATCACTTCTGGATCCTCATTATGTGG
ACAATCTGTCTGGGGAAAATCAACATTTGATTGATTCATATACCACAAAC
GGGCTTGCCTCAACTCCACTCGTAGCTTGGAATTTAACAAACTTGCTTTT
AAGTACAAGTTTATTGGCATTCCCATTCATTGTGCGGCAAGCTGGTTATA
TTGTCTTACCAATTGCATTCTTGATAGCAATGATGCTGAATTATACTAGT
AATATACTTATTGATTTGATGTATGAAAATCTTCCTGAATATGACAACCA
AAGAGTACGTGTCCGAAAACATATCACTGAAATAGGTAGAGAGGTCTTCA
ACTCTGAAAAAGGAGCAAAGTTAGTTCACGTGGTACAAATCATAGAAATG
TTATGCATATGTATTTTGAATATTTGTGTCCTTGGTCAACTTGGACATGA
GATATCAAACTATAATGTTCAGCTGTGTACCGCTATTGCTGCATTGTTTG
CTTTTCCAACATTCTTTATCCGGAAGCTTGCCATCATTGGCTGGTTACAG
ACCATTGGTGTTATATCTTTAGCAATTGGTATAATGCTGATTCAAGGCTG
GTGTTTGGTACATGCTGAAAAGTTCAAAACAGATAACATACCTATCGTAC
AATGGCACAAACTACCTATAGCTATTGGTGTTGTTGTTTATGCTTATGGT
ATACAAGGTGTGTTGCCAGGAATGGAAGAACAGATGAGAAAACCGCAGCA
ATTTGGAAGAGTCATCAACTGGACTTTTAGCGTCTCCTTTATACTACAGT
GTGTTTTCAGTTTAACCAATGCCATGTATTATGGAGAGGAAACAGCACAA
GTTATTGTGATTGATATGAAAGACCATTTTGAATTGGGAATCACTTCAGC
ATGTTTTATTGGGATTTCTATATTATCACATTTCTCTTTACCGACACTTG
TGGTTATGGAGAGTTTGGACAATGCTATTGTAAAAACTTCATCATGCTGC
CCAACCCGTCAGCAGACTCTACACACATTCCTGATGGTGTTATTAAGAAT
CGGTATCATTGCCTTGTGTCTTGGATTAGCTCTTGTTTTACCGTATTTTG
CATATTTAATGGGATTCATAGGTTCTTCAATAACCTTAACAATGTGTCTG
ATTATTCCCTGTACGTTTCATTTGAAGATGAGATATGATACATTGAGGTT
GCACCAAATATGTTTAGATGTTGTTATCATCGTATCCAGTCTGGTTTGTC
TTGGTGCTGGCTCTTACTTTTCTTTTGAATCTATTTATTATGATTGGGTC
AATGGTTCTTATAATTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_040242XLOC_040242-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000304_pilongenomesc0000304_pilon:147503..149585 -
Properties
Property NameValue
Aaloc289-1584:1297
Aaloc145-285:1628
Aaloc1-141:2084