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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000381_pilon:172093..173817+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_040205 ID=XLOC_040205|Name=XLOC_040205|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1725bp|location=Sequence derived from alignment at sc0000381_pilon:172093..173817+ (Clytia hemisphaerica_ch_hm2_pilon)
TTAAAGTGCATATTTAAATTtaatagagaaagaaaaatgacTGGAAATAA
GAGAGATGGATTCAGCTacaaaaaatggcttaaaaatcGTAAAATAACTA
CTAGAACCTTTTACTATATGTCTTTCGTAGATGGTATCGAGTATACATTA
ACATTTGCTACTTTATTCGTATACTTGAGAGATTTCCTGAAAGTTAGTGG
AAGTGATTTGGATATGTTTTACAGCCGTATTTCTGGATTATACCTTTTAT
CGGCCATCCTCTCAGCGCTGATTGTCGGTAAAATGTTCGATAAAATTCGC
CGTGCGCGTCTTATGTTATGTATCATTACTTTGGTTTCAATTATTGGAAA
CGTTTTATACACGATACCAAAATCGCCATACTTTCTACTTATCGGGCGAG
TACTGGCGGGGATGGGCGATTCCTATAATCCGATTATCTTGTCCGAATTA
ACCCGATCCTACCCACCGGAAGAAGTTCTGGCGCAATTAACAGCTATTTC
GTGTGCTTTTATGCTTGGCTGTATGATAGGCCCCTgtatcaatttcattt
tcatcagaGCGGACTTTTGGTTCCTTGGTGTTCATATTAAATACGCAAAT
GGAACGAGCTTGTTGGTTTGTTTCATGTATATCATATCGTTTTTCCTAAT
ATTCTTCTTTGTAACTGACTTGTCGagacattttgatttgaaagaagCTA
TTCAAAATTTGGACGGCAAAGAGCTTGAAAGTTTTGCAAATGGGAATCAA
GATAATGATGAAAAAACTAAGAAATGCTATGAAGAAAGTTCTCTGATTCA
AATGAAATCAGGAAAGCAAACACACGATGATTCAATTGAAGAATGCCATG
ATGCGACAACGCCCTTGTTAGTGGAAGCAAAAACGTTATCGTTATCGAAA
TCGACCATAGGACAGCCTATAAACGAATCTGGGGAAACTTGCCCCGTGCT
TGATAAAAGGATGCATACACTCAATGAAACTGGAGCCATCGACGCCAGGT
TTGCGACAATAGGACAACCTACTGACGACTCCGATGAAACTCATCACGAA
CTTGATAAATCCACCCATATCCAATCACACGGAACCGAAAACACAGCTAT
CGACACCATGTTTATATTACGTAAACTATTCACCAATTTCGATTTGGCTT
TAATATTCGCAATGTCTTTTGTTGTATCTTTTGCACTCGTTACCTGTGAT
CTCTGGATACCTTTAGCATGTCTCAAACTCTTGCATTGGGATAACTTGGA
GGTAAATATCGTGTTAATAGCTGAGGGAGCAGTCTCTTTGATTTTTATAG
TTGTATTAATCTATAAAGAACCAAAGGACGAGAAATTATATTATCTGGGC
TTGATATCATGGATGTGCATGATAATATTGTATGGGATTTTCATGTTCTT
TAAATTGGATCAGGgaaatttcatttggcttgATTCTACATTATGGCTGG
TTGAAACACTCTGTACTAGTGTTATGTATATGGGGGAAGAACTATTCCTT
ATTGGCTCTCTTGCCAAGATGGTACCTTCAAATGTCCAAGCATTTGCGCA
AGGTGTTCGTTTGATTTTCTCCCGCTTTGGTGCCGCTCTTGGGTTGTTTA
CCGCTGCCTTTACATTTCATCGTCTGGAGTATTTTTGTCCGATTCTTTTC
GGTGTAGCTATTTTGTTGGCTCTGCTTTTAGTTGTtaggagaaaatattt
ttgtaatcctgttcaaattttctag Coding sequence (CDS) from alignment at sc0000381_pilon:172093..173817+ >XLOC_040205 ID=XLOC_040205|Name=XLOC_040205|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3450bp|location=Sequence derived from alignment at sc0000381_pilon:172093..173817+ (Clytia hemisphaerica_ch_hm2_pilon)
TTAAAGTGCATATTTAAATTtaatagagaaagaaaaatgacTGGAAATAA
GAGAGATGGATTCAGCTacaaaaaatggcttaaaaatcGTAAAATAACTA
CTAGAACCTTTTACTATATGTCTTTCGTAGATGGTATCGAGTATACATTA
ACATTTGCTACTTTATTCGTATACTTGAGAGATTTCCTGAAAGTTAGTGG
AAGTGATTTGGATATGTTTTACAGCCGTATTTCTGGATTATACCTTTTAT
CGGCCATCCTCTCAGCGCTGATTGTCGGTAAAATGTTCGATAAAATTCGC
CGTGCGCGTCTTATGTTATGTATCATTACTTTGGTTTCAATTATTGGAAA
CGTTTTATACACGATACCAAAATCGCCATACTTTCTACTTATCGGGCGAG
TACTGGCGGGGATGGGCGATTCCTATAATCCGATTATCTTGTCCGAATTA
ACCCGATCCTACCCACCGGAAGAAGTTCTGGCGCAATTAACAGCTATTTC
GTGTGCTTTTATGCTTGGCTGTATGATAGGCCCCTgtatcaatttcattt
tcatcagaGCGGACTTTTGGTTCCTTGGTGTTCATATTAAATACGCAAAT
GGAACGAGCTTGTTGGTTTGTTTCATGTATATCATATCGTTTTTCCTAAT
ATTCTTCTTTGTAACTGACTTGTCGagacattttgatttgaaagaagCTA
TTCAAAATTTGGACGGCAAAGAGCTTGAAAGTTTTGCAAATGGGAATCAA
GATAATGATGAAAAAACTAAGAAATGCTATGAAGAAAGTTCTCTGATTCA
AATGAAATCAGGAAAGCAAACACACGATGATTCAATTGAAGAATGCCATG
ATGCGACAACGCCCTTGTTAGTGGAAGCAAAAACGTTATCGTTATCGAAA
TCGACCATAGGACAGCCTATAAACGAATCTGGGGAAACTTGCCCCGTGCT
TGATAAAAGGATGCATACACTCAATGAAACTGGAGCCATCGACGCCAGGT
TTGCGACAATAGGACAACCTACTGACGACTCCGATGAAACTCATCACGAA
CTTGATAAATCCACCCATATCCAATCACACGGAACCGAAAACACAGCTAT
CGACACCATGTTTATATTACGTAAACTATTCACCAATTTCGATTTGGCTT
TAATATTCGCAATGTCTTTTGTTGTATCTTTTGCACTCGTTACCTGTGAT
CTCTGGATACCTTTAGCATGTCTCAAACTCTTGCATTGGGATAACTTGGA
GGTAAATATCGTGTTAATAGCTGAGGGAGCAGTCTCTTTGATTTTTATAG
TTGTATTAATCTATAAAGAACCAAAGGACGAGAAATTATATTATCTGGGC
TTGATATCATGGATGTGCATGATAATATTGTATGGGATTTTCATGTTCTT
TAAATTGGATCAGGgaaatttcatttggcttgATTCTACATTATGGCTGG
TTGAAACACTCTGTACTAGTGTTATGTATATGGGGGAAGAACTATTCCTT
ATTGGCTCTCTTGCCAAGATGGTACCTTCAAATGTCCAAGCATTTGCGCA
AGGTGTTCGTTTGATTTTCTCCCGCTTTGGTGCCGCTCTTGGGTTGTTTA
CCGCTGCCTTTACATTTCATCGTCTGGAGTATTTTTGTCCGATTCTTTTC
GGTGTAGCTATTTTGTTGGCTCTGCTTTTAGTTGTtaggagaaaatattt
ttgtaatcctgttcaaattttctagTTAAAGTGCATATTTAAATTtaata
gagaaagaaaaatgacTGGAAATAAGAGAGATGGATTCAGCTacaaaaaa
tggcttaaaaatcGTAAAATAACTACTAGAACCTTTTACTATATGTCTTT
CGTAGATGGTATCGAGTATACATTAACATTTGCTACTTTATTCGTATACT
TGAGAGATTTCCTGAAAGTTAGTGGAAGTGATTTGGATATGTTTTACAGC
CGTATTTCTGGATTATACCTTTTATCGGCCATCCTCTCAGCGCTGATTGT
CGGTAAAATGTTCGATAAAATTCGCCGTGCGCGTCTTATGTTATGTATCA
TTACTTTGGTTTCAATTATTGGAAACGTTTTATACACGATACCAAAATCG
CCATACTTTCTACTTATCGGGCGAGTACTGGCGGGGATGGGCGATTCCTA
TAATCCGATTATCTTGTCCGAATTAACCCGATCCTACCCACCGGAAGAAG
TTCTGGCGCAATTAACAGCTATTTCGTGTGCTTTTATGCTTGGCTGTATG
ATAGGCCCCTgtatcaatttcattttcatcagaGCGGACTTTTGGTTCCT
TGGTGTTCATATTAAATACGCAAATGGAACGAGCTTGTTGGTTTGTTTCA
TGTATATCATATCGTTTTTCCTAATATTCTTCTTTGTAACTGACTTGTCG
agacattttgatttgaaagaagCTATTCAAAATTTGGACGGCAAAGAGCT
TGAAAGTTTTGCAAATGGGAATCAAGATAATGATGAAAAAACTAAGAAAT
GCTATGAAGAAAGTTCTCTGATTCAAATGAAATCAGGAAAGCAAACACAC
GATGATTCAATTGAAGAATGCCATGATGCGACAACGCCCTTGTTAGTGGA
AGCAAAAACGTTATCGTTATCGAAATCGACCATAGGACAGCCTATAAACG
AATCTGGGGAAACTTGCCCCGTGCTTGATAAAAGGATGCATACACTCAAT
GAAACTGGAGCCATCGACGCCAGGTTTGCGACAATAGGACAACCTACTGA
CGACTCCGATGAAACTCATCACGAACTTGATAAATCCACCCATATCCAAT
CACACGGAACCGAAAACACAGCTATCGACACCATGTTTATATTACGTAAA
CTATTCACCAATTTCGATTTGGCTTTAATATTCGCAATGTCTTTTGTTGT
ATCTTTTGCACTCGTTACCTGTGATCTCTGGATACCTTTAGCATGTCTCA
AACTCTTGCATTGGGATAACTTGGAGGTAAATATCGTGTTAATAGCTGAG
GGAGCAGTCTCTTTGATTTTTATAGTTGTATTAATCTATAAAGAACCAAA
GGACGAGAAATTATATTATCTGGGCTTGATATCATGGATGTGCATGATAA
TATTGTATGGGATTTTCATGTTCTTTAAATTGGATCAGGgaaatttcatt
tggcttgATTCTACATTATGGCTGGTTGAAACACTCTGTACTAGTGTTAT
GTATATGGGGGAAGAACTATTCCTTATTGGCTCTCTTGCCAAGATGGTAC
CTTCAAATGTCCAAGCATTTGCGCAAGGTGTTCGTTTGATTTTCTCCCGC
TTTGGTGCCGCTCTTGGGTTGTTTACCGCTGCCTTTACATTTCATCGTCT
GGAGTATTTTTGTCCGATTCTTTTCGGTGTAGCTATTTTGTTGGCTCTGC
TTTTAGTTGTtaggagaaaatatttttgtaatcctgttcaaattttctag
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000381_pilon | genome | sc0000381_pilon:172093..173817 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 4-1728:1 |
|
